prot_H-paniculata_contig1772.4230.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1772.4230.1
Unique Nameprot_H-paniculata_contig1772.4230.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length342
Homology
BLAST of mRNA_H-paniculata_contig1772.4230.1 vs. uniprot
Match: D8LD70_ECTSI (Condensin complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD70_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 1.820e-56
Identity = 141/330 (42.73%), Postives = 176/330 (53.33%), Query Frame = 0
Query:    1 MKKMICEDDKEAGSASKVNFQKASCTIEASVKIYSHRVDATHEISCTLLDNLSRKDNETARGGAGDAVLGGSEKSAKYGAHETLKKSHQLNLSDVDRAYAVDPMFHKMSKIFDESGSKGMLLNNLSVSNGCQVSFVSDVAPAKTFPRSESDGGDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRKDSANEAWKGDMVDVSILRATLSGLCSDLSTLPLCPQLEEFRQQIADLEE--------------GADGGRRVSSMTTYKVNASGDSESESDGGWGGFDDIPGGDVASFDGG 316
            M ++I ++  + G  SKVNFQKASCT++ASVKIYSHRVDATH  S +LLDNL+R DN+ A  GAG AV G SE+S + G HETLKK  QL+ S+ DRA+ +DPMFHKMSKIFDE+GSKGMLLNNLSVS+GC+VSF S+ + A T P S  +G +D                                                              G +  A     G M ++  LR+TL  LC DLSTL LCPQLEEFR QIA++EE              G  G R   +  +Y  +     +         FD++PG D AS DGG
Sbjct:   28 MDRVILDEGGQMGG-SKVNFQKASCTLDASVKIYSHRVDATHISSYSLLDNLNRSDNDNADKGAGAAV-GSSERSTRLGVHETLKKPEQLDQSETDRAFKMDPMFHKMSKIFDEAGSKGMLLNNLSVSDGCKVSFDSESSAAATAPPSP-EGAEDQPRREKVFRKPEDVEDGEESKDGETPTGEEA-------------------------------GEQHPAAAEAAGGMTNIKDLRSTLFSLCGDLSTLALCPQLEEFRDQIAEIEEETHKDSGEAAAPRAGRGGARGDGAAVSYDTD-----DXXXXXXXXXFDNVPGLDDASVDGG 318          
BLAST of mRNA_H-paniculata_contig1772.4230.1 vs. uniprot
Match: A0A6H5K318_9PHAE (Condensin complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K318_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 3.460e-55
Identity = 151/385 (39.22%), Postives = 185/385 (48.05%), Query Frame = 0
Query:    1 MKKMICEDDKEAGSASKVNFQKASCTIEASVKIYSHRVDATHEISCTLLDNLSRKDNETARGGAGDAVLGGSEKSAKYGAHETLKKSHQLN------------------------LSDVDRAYAVDPMFHKMSKIFDESGSKGMLLNNLSVSNGCQVSFVSDVAPAKTFPRSESDGGDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRKDSANEAWKGDMVDVSILRATLSGLCSDLSTLPLCPQLEEFRQQIADLEE--------------------GADGGRRVSSMTTYKVNASGDSESESDGGWGGFDDIPGGDVASFDGGGAGGXDGAMDDGSPDLGGDVFADES 341
            M ++I ++  + G  SKVNFQKASCT++ASVKIYSHRVDATH  S +LLDNL+R DN+ A  GAG AV G SE+SA+ G HETLKK  QL+                        + + DRA+ +DPMFHKMSKIFDE+GSKGMLLNNLSVS+GC+VSF S+ + A T P S     D                                                                +  +A EA +G M ++  LR+TL  LC DLSTL LCPQLEEFR QIA++EE                    G DGG   S  T                    FDD+PG D AS DGGG  G  G       +LGG    D++
Sbjct:   28 MDRVILDEGGQMGG-SKVNFQKASCTLDASVKIYSHRVDATHISSYSLLDNLNRSDNDNADKGAGAAV-GSSERSARLGVHETLKKPEQLDQRHVSTDLLLLHRSLFSFYFLFTVVFEADRAFKMDPMFHKMSKIFDEAGSKGMLLNNLSVSDGCKVSFDSESSAAATAPPSPEGAVD-------------------------------RSRRDKVFRKPEGVDDGEDSKDGETPAEEEAGKQHPAAAEAAEG-MTNIKDLRSTLFSLCGDLSTLALCPQLEEFRDQIAEIEEETNRDSGEAAAPHAGRGGARGDDGGAEASYDTXXXXXXXXXXX---------FDDVPGLDDASVDGGGNFGAGGDXXGHDFNLGGGADDDDA 369          
BLAST of mRNA_H-paniculata_contig1772.4230.1 vs. uniprot
Match: K0R4E2_THAOC (Condensin complex subunit 2 (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R4E2_THAOC)

HSP 1 Score: 117 bits (292), Expect = 3.560e-25
Identity = 96/292 (32.88%), Postives = 126/292 (43.15%), Query Frame = 0
Query:    9 DKEAGSASKVNFQKASCTIEASVKIYSHRVDATHEISCTLLDNLSRKDNETARGGAGDAVLGGSE-------------KSAKYGAHETLKKS-HQLNLSDVDRAYAVDPMFHKMSKIFDESGSKGMLLNNLSVS-NGCQVSFVSDVAPAKTFPRSESDGGDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRKDSANEAWKGDMVDVSILRATLSGLCSDL-----STLPLCPQLEEFRQQIADLEEGADGGRRVSSM 280
            D+  G   +VNF KASCT++ASVKIYS+RVD  H  S  +L NL+R D    R G GD   GG+E             +  + G  ET++ +   +N+S +D AY +DP+FHKMSK FDE G+KG+LL NL VS +GC V F S  A A T  R  + G  +                                                                   A  AWK   +D++ L A L  + +       +T+P  PQLE  RQ  A LEE   G    SSM
Sbjct:   38 DEVQGRTGRVNFAKASCTLDASVKIYSYRVDDVHLSSYRVLANLNRSDTNKGRAG-GDHEDGGAEDGEXXXXXRKSMRRQRRAGPTETIESNLANINMSKLDSAYDIDPLFHKMSKSFDEGGAKGLLLGNLGVSTSGCHVVFDSKEATADT--RGAAAGKPELEKIEEGAEENEAEDGCTAEDNMA------------------------------------------DAGPAWKESQIDITNLSAKLEQMLASYGHETSATVPFVPQLESLRQDYARLEEEGYGVDEYSSM 284          
BLAST of mRNA_H-paniculata_contig1772.4230.1 vs. uniprot
Match: A0A6T7G3N6_9STRA (Condensin complex subunit 2 n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7G3N6_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.530e-23
Identity = 66/135 (48.89%), Postives = 88/135 (65.19%), Query Frame = 0
Query:   17 KVNFQKASCTIEASVKIYSHRVDATHEISCTLLDNLSRKDNETARGGA----GD--------AVLGGSEKSAKYGAHETLKKS-HQLNLSDVDRAYAVDPMFHKMSKIFDESGSKGMLLNNLSVSN-GCQVSFVS 137
            +VNF KASCT++ASVKIYS+RVD  H  S  +L NL+R DN   +GG     GD        + +G  ++S + G  ETL+ +   LN+S +D AY +DP+FHKMSK FDE G+KG+LL NL VS+ GC + F S
Sbjct:  199 RVNFTKASCTLDASVKIYSYRVDDVHLTSYKVLANLNRTDNGNKKGGKNSDDGDEESSNHTASEVGERKQSERRGTTETLESNPSNLNMSKLDSAYDIDPLFHKMSKTFDEGGAKGLLLVNLGVSDHGCGIVFDS 333          
BLAST of mRNA_H-paniculata_contig1772.4230.1 vs. uniprot
Match: A0A078G114_BRANA (Condensin complex subunit 2 n=26 Tax=Brassicaceae TaxID=3700 RepID=A0A078G114_BRANA)

HSP 1 Score: 108 bits (271), Expect = 1.750e-22
Identity = 66/147 (44.90%), Postives = 86/147 (58.50%), Query Frame = 0
Query:    5 ICEDDK-EAGSASKVNFQKASCTIEASVKIYSHRVDATHEISCTLLDNLSRK------DNETARGGAGDAVLGGSEKSAKYGAHETLKKSHQ-LNLSDVDRAYAVDPMFHKMSKIFDESGSKGMLLNNLSVSNGCQVSFVSDVAPAK 143
            +CE  K E  + ++ NFQKASCT+EA VKIYS RVD+ H  +  +L  ++R       DNE A G  G+A     +   K     TL+ S   LN+   D A+AVDP++H+ S  FDE G+KG+LLNNL V  GCQV F S   P K
Sbjct:  106 LCEIIKVEDENNAETNFQKASCTLEAGVKIYSMRVDSVHSEAYKVLGGITRAGHDDTGDNEDAAGSVGNATNQKKQTERKISPLSTLEPSFDALNVKKFDVAFAVDPLYHQTSAQFDEGGAKGLLLNNLGVYGGCQVLFDSQEIPGK 252          
BLAST of mRNA_H-paniculata_contig1772.4230.1 vs. uniprot
Match: A0A7S4HYK3_9STRA (Condensin complex subunit 2 n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HYK3_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.110e-22
Identity = 63/142 (44.37%), Postives = 88/142 (61.97%), Query Frame = 0
Query:    7 EDDKEAGSASKVNFQKASCTIEASVKIYSHRVDATHEISCTLLDNLSRKDNETARGGAGDAV---------LGGSEKSAKYGAHETLKKS-HQLNLSDVDRAYAVDPMFHKMSKIFDESGSKGMLLNNLSVSN-GCQVSFVS 137
            E   +  S  +VNF KASCT++ASVKIY +RVD  H  S  +L NL+R DN + +    DA           GG + S + G  +TL+ +   +N+S ++ A  +DP+F KMSK FDE G+KG+LLNNLSV+N GC++ F S
Sbjct:  231 ERKSDGSSKKRVNFTKASCTLDASVKIYGYRVDDVHLTSYKVLANLNRTDNGSKKNSHKDASGDVHDGSDPSGGKKTSVRAGPTDTLESNLAAINMSKLEAAPDIDPLFRKMSKAFDEGGAKGLLLNNLSVANDGCRIEFDS 372          
BLAST of mRNA_H-paniculata_contig1772.4230.1 vs. uniprot
Match: H3H3Y4_PHYRM (Condensin complex subunit 2 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H3Y4_PHYRM)

HSP 1 Score: 107 bits (267), Expect = 7.230e-22
Identity = 58/126 (46.03%), Postives = 78/126 (61.90%), Query Frame = 0
Query:    9 DKEAGSASKVNFQKASCTIEASVKIYSHRVDATHEISCTLLDNLSRKDNET-ARGGAGDAVLGGSEKSAKYGAHETLKKSHQLNLSDVDRAYAVDPMFHKMSKIFDESGSKGMLLNNLSVSNGCQV 133
            D +AG     NFQKASCT++AS+KIYS+RVD T   S  +L+NLSR + +  A    G+     + K+ K  A    K  + +NL   D     DP+FHKMS+ FDE G+KGMLL NLSV +GC++
Sbjct:  154 DGDAGDDDTYNFQKASCTLDASIKIYSYRVDDTWNSSYKILENLSRTEQKHGAETSDGEGATTAARKTRKTHARTIEKNLNNINLKSYDTECEADPLFHKMSQSFDEGGAKGMLLANLSVYDGCKI 279          
BLAST of mRNA_H-paniculata_contig1772.4230.1 vs. uniprot
Match: A0A7S2CLU2_9STRA (Condensin complex subunit 2 (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CLU2_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.610e-21
Identity = 62/147 (42.18%), Postives = 96/147 (65.31%), Query Frame = 0
Query:    1 MKKMICEDDKEAGSAS--KVNFQKASCTIEASVKIYSHRVDATHEISCTLLDNLSR---KDNETARGGAGDAVLGGSEKSAKYGAHETLKKSHQ-LNLSDVDRAYAVDPMFHKMSKIFDESGSKGMLLNNLSVS---NGCQVSFVSD 138
            M+  + E D+   S+    +NFQ+ASCT++ASVKIYS RVD TH+ S  +L+NL+R   ++++ +   +G+A +G    S K+   +TL+K+   LN S +D+   VDP+FHKMS++FD  G+ GMLL N+S+S    GC ++F  D
Sbjct:   87 METFVDEPDESMHSSGTRSINFQRASCTLDASVKIYSCRVDDTHQASFRVLENLTRNGKREDDGSDAPSGNACVGDKTTSRKFCLTKTLEKNPAALNASKMDQTSTVDPLFHKMSQLFDGGGAYGMLLVNMSLSPDSQGCCIAFGDD 233          
BLAST of mRNA_H-paniculata_contig1772.4230.1 vs. uniprot
Match: D0MV02_PHYIT (Condensin complex subunit 2 n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MV02_PHYIT)

HSP 1 Score: 105 bits (261), Expect = 3.710e-21
Identity = 57/117 (48.72%), Postives = 74/117 (63.25%), Query Frame = 0
Query:   19 NFQKASCTIEASVKIYSHRVDATHEISCTLLDNLSRKDNETA--RGGAGDAVLGGSEKSAKYGAHETLKKSHQLNLSDVDRAYAVDPMFHKMSKIFDESGSKGMLLNNLSVSNGCQV 133
            NFQKASCT++AS+KIYS+RVD T   S  +L+NLSR + +     GG   A    S K+ K  A    K  + +NL   D     DP+FHKMS+ FDE G+KGMLL NLSV +GC++
Sbjct:   23 NFQKASCTLDASIKIYSYRVDDTWNSSYKILENLSRTEQKHGVDDGGEDGATTAKSRKTRKTHARTIEKNLNNINLKAYDTECEADPLFHKMSQSFDEGGAKGMLLANLSVYDGCKI 139          
BLAST of mRNA_H-paniculata_contig1772.4230.1 vs. uniprot
Match: A0A833TFZ0_PHYIN (Condensin complex subunit 2 n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TFZ0_PHYIN)

HSP 1 Score: 105 bits (261), Expect = 4.010e-21
Identity = 57/117 (48.72%), Postives = 74/117 (63.25%), Query Frame = 0
Query:   19 NFQKASCTIEASVKIYSHRVDATHEISCTLLDNLSRKDNETA--RGGAGDAVLGGSEKSAKYGAHETLKKSHQLNLSDVDRAYAVDPMFHKMSKIFDESGSKGMLLNNLSVSNGCQV 133
            NFQKASCT++AS+KIYS+RVD T   S  +L+NLSR + +     GG   A    S K+ K  A    K  + +NL   D     DP+FHKMS+ FDE G+KGMLL NLSV +GC++
Sbjct:  152 NFQKASCTLDASIKIYSYRVDDTWNSSYKILENLSRTEQKHGVDDGGEDGATTAKSRKTRKTHARTIEKNLNNINLKAYDTECEADPLFHKMSQSFDEGGAKGMLLANLSVYDGCKI 268          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1772.4230.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD70_ECTSI1.820e-5642.73Condensin complex subunit 2 n=1 Tax=Ectocarpus sil... [more]
A0A6H5K318_9PHAE3.460e-5539.22Condensin complex subunit 2 n=1 Tax=Ectocarpus sp.... [more]
K0R4E2_THAOC3.560e-2532.88Condensin complex subunit 2 (Fragment) n=1 Tax=Tha... [more]
A0A6T7G3N6_9STRA2.530e-2348.89Condensin complex subunit 2 n=1 Tax=Attheya septen... [more]
A0A078G114_BRANA1.750e-2244.90Condensin complex subunit 2 n=26 Tax=Brassicaceae ... [more]
A0A7S4HYK3_9STRA2.110e-2244.37Condensin complex subunit 2 n=1 Tax=Odontella auri... [more]
H3H3Y4_PHYRM7.230e-2246.03Condensin complex subunit 2 n=1 Tax=Phytophthora r... [more]
A0A7S2CLU2_9STRA2.610e-2142.18Condensin complex subunit 2 (Fragment) n=1 Tax=Dic... [more]
D0MV02_PHYIT3.710e-2148.72Condensin complex subunit 2 n=1 Tax=Phytophthora i... [more]
A0A833TFZ0_PHYIN4.010e-2148.72Condensin complex subunit 2 n=1 Tax=Phytophthora i... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022816Condensin complex subunit 2/barrenPFAMPF05786Cnd2coord: 16..336
e-value: 9.2E-32
score: 110.6
IPR022816Condensin complex subunit 2/barrenPANTHERPTHR13108FAMILY NOT NAMEDcoord: 12..328

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1772contigH-paniculata_contig1772:1804..20076 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1772.4230.1mRNA_H-paniculata_contig1772.4230.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1772 1804..20090 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1772.4230.1 ID=prot_H-paniculata_contig1772.4230.1|Name=mRNA_H-paniculata_contig1772.4230.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=342bp
MKKMICEDDKEAGSASKVNFQKASCTIEASVKIYSHRVDATHEISCTLLD
NLSRKDNETARGGAGDAVLGGSEKSAKYGAHETLKKSHQLNLSDVDRAYA
VDPMFHKMSKIFDESGSKGMLLNNLSVSNGCQVSFVSDVAPAKTFPRSES
DGGDDDDGDNDDNKKCDDVNTIEIEDGDRVPGDEGEGSEKVRKEAEERKN
KDDESSEGNLDGGSMEAGRKDSANEAWKGDMVDVSILRATLSGLCSDLST
LPLCPQLEEFRQQIADLEEGADGGRRVSSMTTYKVNASGDSESESDGGWG
GFDDIPGGDVASFDGGGAGGGDGAMDDGSPDLGGDVFADES*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022816Condensin_barren_su2