prot_H-paniculata_contig17708.4228.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig17708.4228.1
Unique Name	prot_H-paniculata_contig17708.4228.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	182

Homology

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BLAST of mRNA_H-paniculata_contig17708.4228.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 330 bits (847), Expect = 4.140e-114
Identity = 163/181 (90.06%), Postives = 173/181 (95.58%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFFDPLGMLTDADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSTSAGISFADMPNGVAALSKIPPAGLAQIIAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 181
            MKM+FESEIGAQPPLGF+DPLG+L DADQERF+RLRYVEVKHGRIAMLAIAGHLTQQN RLPGMLS SA +SFADMPNGVAALSKIPPAGLAQI AFIGFLELAVMKNVEGSFPGDFTLGGN FGSSWDAMSEETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA Y FN
Sbjct:    1 MKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181

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BLAST of mRNA_H-paniculata_contig17708.4228.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 331 bits (849), Expect = 7.240e-114
Identity = 164/181 (90.61%), Postives = 174/181 (96.13%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFFDPLGMLTDADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSTSAGISFADMPNGVAALSKIPPAGLAQIIAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 181
            MKM+FESEIGAQ PLGF+DPLG+L DADQERF+RLRYVEVKHGRIAMLAIAGHLTQQN RLPGMLS SA +SFADMPNGVAALSKIPPAGLAQI AFIGFLELAVMKNVEGSFPGDFTLGGN FG+SWDAMSEETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDLVGASYTFN
Sbjct:   37 MKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217

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BLAST of mRNA_H-paniculata_contig17708.4228.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 327 bits (839), Expect = 2.500e-112
Identity = 162/181 (89.50%), Postives = 172/181 (95.03%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFFDPLGMLTDADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSTSAGISFADMPNGVAALSKIPPAGLAQIIAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 181
            MKM+FESEIGAQPPLGF+DPLG+L DADQERF+RLRYVEVKHGRIAMLAIAGHLTQQN RLPGMLS SA +SFADMPNGVAALSKIPPAGLAQI AF+GFLELAVMKNVEGSFPGDFT GGN F SSWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PYIINDL+GASYTFN
Sbjct:   38 MKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218

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BLAST of mRNA_H-paniculata_contig17708.4228.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 327 bits (838), Expect = 3.950e-112
Identity = 161/181 (88.95%), Postives = 172/181 (95.03%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFFDPLGMLTDADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSTSAGISFADMPNGVAALSKIPPAGLAQIIAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 181
            MKM+FESEIGAQPPLGF+DPLG+L DADQERF+RLRYVEVKHGRIAMLAIAGHLTQQN RLPGMLS SA +SFADMPNGVAALSKIPPAGLAQI AF+GFLELAVMKNVEGSFPGDFT GGN F SSWDAMSEETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA YTFN
Sbjct:   41 MKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221

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BLAST of mRNA_H-paniculata_contig17708.4228.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 332 bits (852), Expect = 5.730e-112
Identity = 164/181 (90.61%), Postives = 174/181 (96.13%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFFDPLGMLTDADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSTSAGISFADMPNGVAALSKIPPAGLAQIIAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 181
            MKM+FESEIGAQPPLGF+DPLG+L DADQERF+RLRYVEVKHGRIAMLAIAGHLTQQN RLPGMLS SA +SFADMPNGVAALSKIPPAGLAQI AFIGFLELAVMKNVEGSFPGDFTLGGN FGSSWDAMSEETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GA YTFN
Sbjct:  197 MKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377

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BLAST of mRNA_H-paniculata_contig17708.4228.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 321 bits (823), Expect = 1.960e-110
Identity = 159/181 (87.85%), Postives = 169/181 (93.37%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFFDPLGMLTDADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSTSAGISFADMPNGVAALSKIPPAGLAQIIAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 181
            MKM+FE EIGAQ PLGF+DPLG+L DADQERF+RLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLS SA +SFADMPNGVAALSKIPP GLAQI  FIGFLELAVMKNVEGSFPGDFTLGGN F SSWDAMSEETQ SKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY FN
Sbjct:    2 MKMSFELEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182

[Close]

BLAST of mRNA_H-paniculata_contig17708.4228.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 320 bits (821), Expect = 1.080e-109
Identity = 159/181 (87.85%), Postives = 167/181 (92.27%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFFDPLGMLTDADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSTSAGISFADMPNGVAALSKIPPAGLAQIIAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 181
            MKM+FESEIGAQ PLGF+DPLG+L DADQERF+RLRYVEVKHGRIAMLAIAGHLTQQN RLPGMLS SA +SFADMPNGVAALSKIPP GLAQI  FIGFLELAVMKNVEGSFPGDF +GGN F SSWD+MS ETQASKRAIELNNGRAAQMGIL MMVHEELSNQPYI NDL+GASYTFN
Sbjct:   31 MKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211

[Close]

BLAST of mRNA_H-paniculata_contig17708.4228.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 315 bits (807), Expect = 1.750e-107
Identity = 157/181 (86.74%), Postives = 168/181 (92.82%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFFDPLGMLTDADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSTSAGISFADMPNGVAALSKIPPAGLAQIIAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 181
            MKM+FESEIGAQ PLGF+DPLG+L DADQ+ F+RLRYVEVK GRIAMLAIAGHLTQQNARLPGMLS SA +SFADMPNGVAALSKIPP GLAQI  FIGFLELAVMKNVEGSFPGDFTLGGN F SSWDAMS ETQASKRAIELNNGRAAQMGILA+MVHEEL+N+PY+INDL+GASY FN
Sbjct:   36 MKMSFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216

[Close]

BLAST of mRNA_H-paniculata_contig17708.4228.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE)

HSP 1 Score: 290 bits (741), Expect = 1.400e-97
Identity = 147/206 (71.36%), Postives = 162/206 (78.64%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFFDPLGMLTDA-------------------------DQERFDRLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSTSAGISFADMPNGVAALSKIPPAGLAQIIAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 181
            MKM+FESE+GAQPPLGFFDPLG+L D                          DQERFDRLRYVEVKHGRI+MLA+AGHL  QN R PG LS  A ++FADMPNGVAA+SKIPP GLAQI+AFIGFLEL VMKNVEGSFPGD T+GGN F + WDAMSEET+ SKRAIELNNGRAAQMGILAMM+HEE+SNQPYIINDL+ A YTFN
Sbjct:    1 MKMSFESELGAQPPLGFFDPLGLLIDQVVPQLPPSCQSSLLVICADGLEPWEDQERFDRLRYVEVKHGRISMLAVAGHLVAQNYRFPGYLSYDAKLTFADMPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206

[Close]

BLAST of mRNA_H-paniculata_contig17708.4228.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY)

HSP 1 Score: 288 bits (738), Expect = 4.920e-97
Identity = 142/181 (78.45%), Postives = 156/181 (86.19%), Query Frame = 0

Query:    1 MKMAFESEIGAQPPLGFFDPLGMLTDADQERFDRLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSTSAGISFADMPNGVAALSKIPPAGLAQIIAFIGFLELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAAQMGILAMMVHEELSNQPYIINDLVGASYTFN 181
            MKM+FESEIGAQPP+GF+DPLG++ DADQERFDRLRYVE+KHGRIAMLA+ GH+TQQN RLPGMLS    ++FAD PNGVAA SKIPP G  QII  IG  EL V+K VEGSFPGD T GGN F S+WD MSEETQASKRAIELNNGRAAQMGILAMMVHE+LSNQPYIINDL GA+Y FN
Sbjct:   32 MKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGGNIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYQFN 212

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig17708.4228.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig17708.4228.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JDS8_9PHAE	4.140e-114	90.06	LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
FCPB_MACPY	7.240e-114	90.61	Fucoxanthin-chlorophyll a-c binding protein B, chl...	[more]
A0A6H5KCX6_9PHAE	2.500e-112	89.50	LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI...	[more]
A0A6H5JHT6_9PHAE	3.950e-112	88.95	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LNK6_ECTSI	5.730e-112	90.61	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
FCPD_MACPY	1.960e-110	87.85	Fucoxanthin-chlorophyll a-c binding protein D, chl...	[more]
FCPF_MACPY	1.080e-109	87.85	Fucoxanthin-chlorophyll a-c binding protein F, chl...	[more]
FCPC_MACPY	1.750e-107	86.74	Fucoxanthin-chlorophyll a-c binding protein C, chl...	[more]
A0A6H5KBS3_9PHAE	1.400e-97	71.36	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
FCPE_MACPY	4.920e-97	78.45	Fucoxanthin-chlorophyll a-c binding protein E, chl...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 7..177 e-value: 1.0E-24 score: 89.4
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 9..161 e-value: 7.2E-32 score: 111.1
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 2..165
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 2..165
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 2..171

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig17708	contig	H-paniculata_contig17708:3933..4478 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig17708.4228.1	mRNA_H-paniculata_contig17708.4228.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig17708 2843..5267 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig17708.4228.1 ID=prot_H-paniculata_contig17708.4228.1|Name=mRNA_H-paniculata_contig17708.4228.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=182bp
MKMAFESEIGAQPPLGFFDPLGMLTDADQERFDRLRYVEVKHGRIAMLAI
AGHLTQQNARLPGMLSTSAGISFADMPNGVAALSKIPPAGLAQIIAFIGF
LELAVMKNVEGSFPGDFTLGGNWFGSSWDAMSEETQASKRAIELNNGRAA
QMGILAMMVHEELSNQPYIINDLVGASYTFN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln