mRNA_H-paniculata_contig17706.4226.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17706.4226.1
Unique NamemRNA_H-paniculata_contig17706.4226.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17706.4226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17706contigH-paniculata_contig17706:4444..5380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929384.1235576-CDS-H-paniculata_contig17706:4445..44971622929384.1235576-CDS-H-paniculata_contig17706:4445..4497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17706 4446..4497 -
1691480839.8967445-CDS-H-paniculata_contig17706:4445..44971691480839.8967445-CDS-H-paniculata_contig17706:4445..4497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17706 4446..4497 -
1622929384.134672-CDS-H-paniculata_contig17706:5162..53801622929384.134672-CDS-H-paniculata_contig17706:5162..5380Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17706 5163..5380 -
1691480839.905945-CDS-H-paniculata_contig17706:5162..53801691480839.905945-CDS-H-paniculata_contig17706:5162..5380Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17706 5163..5380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17706.4226.1prot_H-paniculata_contig17706.4226.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17706 4446..5380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17706.4226.1

>prot_H-paniculata_contig17706.4226.1 ID=prot_H-paniculata_contig17706.4226.1|Name=mRNA_H-paniculata_contig17706.4226.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
GWGRIGEWEEGRRRRPRRRRGCHRLVLLLEDFRQGNSNSSSHRRCRSRSG
GWGRQGEGRRRPLPRPEETCASRTGNEKNLLKEAQSLGAA
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mRNA from alignment at H-paniculata_contig17706:4444..5380-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17706.4226.1 ID=mRNA_H-paniculata_contig17706.4226.1|Name=mRNA_H-paniculata_contig17706.4226.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=937bp|location=Sequence derived from alignment at H-paniculata_contig17706:4444..5380- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTGGGGCAGGATAGGGGAATGGGAAGAGGGTCGCCGCCGCCGCCCCCG
CCGCCGCAGAGGATGCCACCGCCTGGTCCTCCTCCTAGAGGATTTCCGCC
AGGGCAACAGCAACAGCAGCAGCCACCGCCGGTGCCGCAGCAGATCGGGG
GGATGGGGCAGGCAGGGCGAGGGCCGCCGCCGCCCCCTCCCCCGCCCGGA
GGAAACATGCGCCAGCAGGTGAGGTGGATGACAAAGAGCAGTTGTTTAGG
ATGGAGGTGTTTTTTTGTTTGTTTGTTTTGGAGTCGTCCGCCGTGTTGCT
GAGTGTTCGGATGCTGTGTTCTGTTGTTGGACATCTGGTGGCGTGACGTG
CTTGGGGACTGGTGGTGGCGGTGGACATGGGAAGGTTTGTGATGAGAGAG
GTGGGTTGTGGCTGGGATGCGAAAAACGCTTACTGTGATTATTTTGTGTT
GTATTTGTTTATTATGTGTTAGTTTGTTTGTGGGAAGGAGTGAGGGATGG
AGCCTAGTTTTCACTGGAAGTTTTGATCACCTCATCATTGGTTCGTAAAG
TTGCTGACCACAATGACTGTGGGCTACATGCGTGACGTCAGCGTGAGATG
TCGGAGTGTTCTGCTGTTGAAGACAAAAAATCCCCATGTATATGAAATAT
AACATGCAGAGAGAAGACGGGGCAAACGTTTAATTATAGACAAATGTCGT
ACACAGCAAAGACGATGCCATATATGTATGTATTTTCATAGTGGTTGCCT
TTTGCTTACGCCCTCGTGGCCCTCTTCTCCGTCCCGTTGTGCACAACCTA
AACTTGCTCTGTTCGTGAACCCGCTGTTTTACCGTTTGTTTGGTTGTTTT
TGCTTCTCAAAAATTGTGTAATATTGAAAGCAGGACAGGCAATGAGAAGA
ATTTATTAAAAGAAGCACAAAGCCTTGGGGCGGCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig17706:4444..5380-

>mRNA_H-paniculata_contig17706.4226.1 ID=mRNA_H-paniculata_contig17706.4226.1|Name=mRNA_H-paniculata_contig17706.4226.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig17706:4444..5380- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGTGGGGCAGGATAGGGGAATGGGAAGAGGGTCGCCGCCGCCGCCCCCG
CCGCCGCAGAGGATGCCACCGCCTGGTCCTCCTCCTAGAGGATTTCCGCC
AGGGCAACAGCAACAGCAGCAGCCACCGCCGGTGCCGCAGCAGATCGGGG
GGATGGGGCAGGCAGGGCGAGGGCCGCCGCCGCCCCCTCCCCCGCCCGGA
GGAAACATGCGCCAGCAGGGGTGGGGCAGGATAGGGGAATGGGAAGAGGG
TCGCCGCCGCCGCCCCCGCCGCCGCAGAGGATGCCACCGCCTGGTCCTCC
TCCTAGAGGATTTCCGCCAGGGCAACAGCAACAGCAGCAGCCACCGCCGG
TGCCGCAGCAGATCGGGGGGATGGGGCAGGCAGGGCGAGGGCCGCCGCCG
CCCCCTCCCCCGCCCGGAGGAAACATGCGCCAGCAGGACAGGCAATGAGA
AGAATTTATTAAAAGAAGCACAAAGCCTTGGGGCGGCGGACAGGCAATGA
GAAGAATTTATTAAAAGAAGCACAAAGCCTTGGGGCGGCG
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