mRNA_H-paniculata_contig17700.4224.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17700.4224.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI) HSP 1 Score: 296 bits (758), Expect = 3.490e-94 Identity = 151/272 (55.51%), Postives = 197/272 (72.43%), Query Frame = 2
Query: 131 SSMTILAAVGSML--TTVTTTQALRVTTPSEGMSVVAGSSYPIEWTGASSDARFEIDLTYCGSYSFCFDD-NCGVLLDSLCMEGAG-GCALDSNGGHDVIMPEPLGGLSGSGYKVRIAEVGGGFDSVRCSDDFYLVASRDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYNNGFGNTVGRFKIDLYT---EDGTGDCGGWIGSICDKPDIGCKDSTGNYDVVMPSVADAGMYKIRVGLFGNDAVYACSQTFEVLPMGE------GIW 907
SS+ L A+ +L TT+T+T+AL+V TP+ +VV+G Y + W GAS+D RFEIDL YCGSYS+CF++ CG L ++C EG G GC ++ V PEPLGG S GY++RIAEVG D+ RCSDDFYL++S D P VG G P+I VV+PTA+++AI+GE YTVEFDY+NGFG +GRFKIDLY EDG GDCG W+ S+CDKPD+GC DS G+Y+VV+P+ ++ GMYKIRVGLFG+D +YACS +FEV+ G+W
Sbjct: 3 SSVASLVALAGILGHTTITSTEALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGS--DTYRCSDDFYLMSSADAPAVGEDGGPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVVAAAADAAGAAGLW 272
BLAST of mRNA_H-paniculata_contig17700.4224.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE) HSP 1 Score: 288 bits (736), Expect = 4.730e-91 Identity = 142/269 (52.79%), Postives = 190/269 (70.63%), Query Frame = 2
Query: 131 SSMTILAAVGSML-TTVTTTQALRVTTPSEGMSVVAGSSYPIEWTGASSDARFEIDLTYCGSYSFCFDD--NCGVLLDSLCMEGAGGCALDSNGGHDVIMPEPLGGLSGSGYKVRIAEVGGGFDSVRCSDDFYLVASRDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYNNGFGNTVGRFKIDLYTEDGTGDCGGWIGSICDKPDIGCKDSTGNYDVVMPSVADAGMYKIRVGLFGNDAVYACSQTFE-------VLPMGEGIW 907
SS+ L A+ +L T+T+T+ALRV TP+ SV +G Y + W GA +D RFE+DL YCGSYSFCF + +CG + ++C E C + + V PEP+ G S +GY+VRI+EVG D+ RCS+DFYLVAS DV G G P++ VV+P A ++A++GE YTVEFDY+NGFG +GRFKIDLY +G GDCG W+ S+CDKPD+GC+DS G+YDVV+P+ ++ GMYKIRVGLFG+D++YACS +FE VL G G+W
Sbjct: 3 SSVAFLTALAGVLGNTITSTEALRVLTPAVAESVASGRPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVG--TDNFRCSEDFYLVASADVLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEITTTNPGVLAAGGGLW 269
BLAST of mRNA_H-paniculata_contig17700.4224.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI) HSP 1 Score: 271 bits (692), Expect = 1.080e-84 Identity = 136/261 (52.11%), Postives = 185/261 (70.88%), Query Frame = 2
Query: 131 SSMTILAAVGSML-TTVTTTQALRVTTPSEGMSVVAGSSYPIEWTGASSDARFEIDLTYCGSYSFCFD--DNCGVLLDSLCMEGAGGCALDSNGGHDVIMPEPLGGLSGSGYKVRIAEVGGGFDSVRCSDDFYLVASRDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYNNGFGNTVGRFKIDLYTEDGTGDCGGWIGSICDKPDIGCKDSTGNYDVVMPSVADAGMYKIRVGLFGNDAVYACSQTFEVLPMGEGI 904
SS+ +AA+ ML +T T+ALRV TP+ +VV+ Y + W GAS D RFEIDL YCGSYSFCF+ D CG + +LC EG C + V +PEP+ G S SGY+VRI +VG ++ RCSD+FYL++S D G P++ VV+P++ ++A++G YTVEFDY+NGFG GRFKIDLY +GTGDCG W+ S+CDKPD+GC D+ G+YD+V+P ++ GMYKIRVGLFG+D+V+ACS +FEV+P +G+
Sbjct: 3 SSVAFIAALTGMLGNIITDTEALRVLTPAVAETVVSDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCAEGDDACMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVG--TETFRCSDEFYLMSSADASDQDG---PTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHAEGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVVPETQGL 258
BLAST of mRNA_H-paniculata_contig17700.4224.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI) HSP 1 Score: 259 bits (663), Expect = 4.160e-80 Identity = 128/232 (55.17%), Postives = 165/232 (71.12%), Query Frame = 2
Query: 191 ALRVTTPSEGMSVVAGSSYPIEWTGASSDARFEIDLTYCGSYSFCFDDNCGVLLDSLCMEGAGGCALDSNGGHDVIMPEPLGGLSGSGYKVRIAEVGGGFDSVRCSDDFYLVASRDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYNNGFGNTVGRFKIDLYTEDGTGDCGGWIGSICDKPDIGCKDSTGNYDVVMPSVADAGMYKIRVGLFGNDAVYACSQTFEVL 886
AL V TP+EG VVA +Y +EWTG S+ R+EIDL YCGS C +D CG + +LC G GC D+ G +D++MPEP+ G SGSGYKVR+A+V DS CSD+FYL+A + P G G P + V SP++ A +GEEYTVEFDY+NG G++VGRF IDLY+ G+GDCG ++ ++CDKP IGCKDS G+YDV +P A+AGMY IRVG F +D+VY CS FE+L
Sbjct: 7 ALEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGS--MCMEDECGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDD-DSGDCSDEFYLMAHAEAPSAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEIL 234
BLAST of mRNA_H-paniculata_contig17700.4224.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE) HSP 1 Score: 253 bits (646), Expect = 1.120e-77 Identity = 125/231 (54.11%), Postives = 166/231 (71.86%), Query Frame = 2
Query: 191 ALRVTTPSEGMSVVAGSSYPIEWTGASSDARFEIDLTYCGSYSFCFDDNCGVLLDSLCMEGAGGCALDSNGGHDVIMPEPLGGLSGSGYKVRIAEVGGGFDSVRCSDDFYLVASRDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYNNGFGNTVGRFKIDLYTEDGTGDCGGWIGSICDKPDIGCKDSTGNYDVVMPSVADAGMYKIRVGLFGNDAVYACSQTFEV 883
AL+V+TPS+G++V+A +Y +EWTG SSD RFEIDL YCGS C +D+CG + +LC G GC D+ G +D++MPEP+ G SGSGYKVR+ ++ D+ CSD+FYL+AS + P VG P++ V SP + +A + EYTVEFDY+NG G++V RF IDLY DG GDCG ++ SICDKP IGCKDS G+YDV +P DAG YKIRV F +D++Y+CS TF +
Sbjct: 19 ALKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGS--MCMEDDCGDWVTALCPYGEDGCP-DNEGDYDIVMPEPMLGTSGSGYKVRVWDIHDEEDA-DCSDEFYLLASSEAPSVGDEDGPTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI 245
BLAST of mRNA_H-paniculata_contig17700.4224.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE) HSP 1 Score: 251 bits (642), Expect = 3.310e-77 Identity = 124/232 (53.45%), Postives = 160/232 (68.97%), Query Frame = 2
Query: 191 ALRVTTPSEGMSVVAGSSYPIEWTGASSDARFEIDLTYCGSYSFCFDDNCGVLLDSLCMEGAGGCALDSNGGHDVIMPEPLGGLSGSGYKVRIAEVGGGFDSVRCSDDFYLVASRDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYNNGFGNTVGRFKIDLYTEDGTGDCGGWIGSICDKPDIGCKDSTGNYDVVMPSVADAGMYKIRVGLFGNDAVYACSQTFEVL 886
AL V TP+ G VV+ +Y +EW+G S+ RFEIDL YC S C +D CG + +LC G GC D+ G +D++MPEP+ G SGSGYKVR+A+V DS CSD+FYL+A D P G P + V SP+ A +GEEYTVEFDY+NG G++VGRF IDLY G+GDCG ++ ++CDKP IGCKDS G+YDV +P A+AGMY IRVG F +++VY CS FE+L
Sbjct: 20 ALEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNS--MCMEDECGEWVTALCPYGEDGCP-DNEGDYDIVMPEPMSGTSGSGYKVRVADVDDE-DSSDCSDEFYLMAHADAPSASDAGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEIL 247
BLAST of mRNA_H-paniculata_contig17700.4224.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI) HSP 1 Score: 239 bits (610), Expect = 1.860e-72 Identity = 124/232 (53.45%), Postives = 156/232 (67.24%), Query Frame = 2
Query: 191 ALRVTTPSEGMSVVAGSSYPIEWTGASSDARFEIDLTYCGSYSFCFDDNCGVLLDSLCMEGAGGCALDSNGGHDVIMPEPLGGLSGSGYKVRIAEVGGGFDSVRCSDDFYLVASRDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYNNGFGNTVGRFKIDLYTEDGTGDCGGWIGSICDKPDIGCKDSTGNYDVVMPSVADAGMYKIRVGLFGNDAVYACSQTFEVL 886
AL V TPS + VVA +Y +EWTGA S RFEIDL +CGS C +D+CG + +LC G GC D+ G +D++MPEP+ G S SGYKVR+ +V DS+ CSD FYL+AS D P G + V SP A +GEEYTVEFDY+NG G+ V RF IDLY DG GDCG ++ SICDKP IGCKDS G+YDV +P+ +AG YKIRVG F ++ +Y CS TF ++
Sbjct: 19 ALEVVTPSADLIVVADRTYTVEWTGADS-GRFEIDLYHCGS--MCMEDSCGDWVTALCPYGEEGCP-DNEGDYDIVMPEPMSGESNSGYKVRVMDVSDE-DSMDCSDAFYLMASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIM 245
BLAST of mRNA_H-paniculata_contig17700.4224.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI) HSP 1 Score: 228 bits (581), Expect = 3.430e-68 Identity = 120/232 (51.72%), Postives = 160/232 (68.97%), Query Frame = 2
Query: 191 ALRVTTPSEGMSVVAGSSYPIEWTGASSDARFEIDLTYCGSYSFCFDDNCGVLLDSLCMEGAGGCALDSNGGHDVIMPEPLGGLSGSGYKVRIAEVGGGFDSVRCSDDFYLVASRDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYNNGFGNTVGRFKIDLYTEDGTGDCGGWIGSICDKPDIGCKDSTGNYDVVMPSVADAGMYKIRVGLFGNDAVYACSQTFEVL 886
AL V +P+ G VVA S+Y +EWTGA+S R++IDL YCGS C +D CG + +LC G GC D+ G +DV+MPEP+ G S SGYKV + + D CS DF L+AS + P GA ++V SP+ A++G EYTVEFDY+NG G++V RF IDLY+ G+GDCG ++ +ICDKP IGCKDS G+YDVV+PS ++GMY IRVG+F +D VY CS +FE++
Sbjct: 19 ALEVVSPAAGDMVVADSAYTVEWTGATS-GRYDIDLYYCGSV--CMEDECGDWVTALCPYGDDGCP-DTQGDYDVVMPEPMDGTS-SGYKVMVTDSSDESD-YGCSGDFTLIASTEAPDATDMGA-YVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIV 243
BLAST of mRNA_H-paniculata_contig17700.4224.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE) HSP 1 Score: 227 bits (578), Expect = 1.020e-67 Identity = 121/231 (52.38%), Postives = 155/231 (67.10%), Query Frame = 2
Query: 191 ALRVTTPSEGMSVVAGSSYPIEWTGASSDARFEIDLTYCGSYSFCFDDNCGVLLDSLCMEGAGGCALDSNGGHDVIMPEPLGGLSGSGYKVRIAEVGGGFDSVRCSDDFYLVASRDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYNNGFGNTVGRFKIDLYTEDGTGDCGGWIGSICDKPDIGCKDSTGNYDVVMPSVADAGMYKIRVGLFGNDAVYACSQTFEV 883
AL V +P G+SV+A +Y +EWTG ++ RFEIDL YC S FC DD CG + +LC GA GC DS G +D+IMPEP+ G S SGYKV + D + CSDDF L+AS D P G G S+ V SP+ A++GE YTVE+DY NGFG++ RF +DLY GTGDCG ++ ++CD+P IGC DS G+YDV +PS AGMY IRVG+F ++ +Y CS TFEV
Sbjct: 19 ALEVVSPDGGISVLADRAYTVEWTGTTT-GRFEIDLYYCNS--FCMDDVCGDWVTALCPYGADGCP-DSAGDYDIIMPEPMSGTS-SGYKVMVKNAEDESD-MGCSDDFTLIASEDAPEAGEMGY-SLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEV 242
BLAST of mRNA_H-paniculata_contig17700.4224.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI) HSP 1 Score: 224 bits (571), Expect = 1.120e-66 Identity = 118/233 (50.64%), Postives = 158/233 (67.81%), Query Frame = 2
Query: 191 ALRVTTPSEGMSVVAGSSYPIEWTGASSDARFEIDLTYCGSYSFCFDDNCGVLLDSLCMEGAGGCALDSNGGHDVIMPEPLGGLSGSGYKVRIAEVGGGFDSVRCSDDFYLVASRDVPMVGGGGAPSIAVVSPTAESVAISGEEYTVEFDYNNGFGNTVGRFKIDLYTED-GTGDCGGWIGSICDKPDIGCKDSTGNYDVVMPSVADAGMYKIRVGLFGNDAVYACSQTFEVL 886
AL V +P+ G+SV+A +Y +EWTG S D+RFEIDL YCGS FC +D CG + +LC GA GC D+ G +D++MPEP+ G S SGYKV + + S+ CS DF LVAS D P G G S+ V SP+ A++G YTVE+DY NG G++ RF IDLY+ GTGDCG ++ ++CDKP IGC DS G+YDV +PS AGMY +RVG+F +D ++ CS+ FE++
Sbjct: 19 ALEVVSPAAGISVIADRTYTVEWTGTS-DSRFEIDLYYCGS--FCMEDECGDWVTALCPYGADGCP-DTQGDYDIVMPEPMAGTS-SGYKVVVTD-SNDESSMGCSGDFTLVASTDAPAAGEVGY-SLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIV 244 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17700.4224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17700.4224.1 >prot_H-paniculata_contig17700.4224.1 ID=prot_H-paniculata_contig17700.4224.1|Name=mRNA_H-paniculata_contig17700.4224.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=264bp MSFSSMTILAAVGSMLTTVTTTQALRVTTPSEGMSVVAGSSYPIEWTGASback to top mRNA from alignment at H-paniculata_contig17700:1026..4006- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17700.4224.1 ID=mRNA_H-paniculata_contig17700.4224.1|Name=mRNA_H-paniculata_contig17700.4224.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2981bp|location=Sequence derived from alignment at H-paniculata_contig17700:1026..4006- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17700:1026..4006- >mRNA_H-paniculata_contig17700.4224.1 ID=mRNA_H-paniculata_contig17700.4224.1|Name=mRNA_H-paniculata_contig17700.4224.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1584bp|location=Sequence derived from alignment at H-paniculata_contig17700:1026..4006- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |