mRNA_H-paniculata_contig17699.4218.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17699.4218.1
Unique NamemRNA_H-paniculata_contig17699.4218.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17699.4218.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 327 bits (838), Expect = 5.390e-104
Identity = 177/455 (38.90%), Postives = 274/455 (60.22%), Query Frame = 1
Query:    1 FKARLVVQGWSQKHGVDCGSTFAPVCRLESQRLLLALATAKD*TVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQPYVMSLKKSVYGLRQSPNVWNHTIDNELRSMGFAPTVSDPCVYSKGSNDTYIMFSLFVDDILVTGPTDRLLMDVRNKLMNKFTITSLGEVSLILGMEVLRNEHIGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKKYQAMVGSLIFLTQCTRFDICVSVMQAARCMSAPTQQRLVAVKRIFRYLQGHPDVPITHSRCEPKLLGYPDASYCT-----RSTTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGICLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKDWIRRHQLIIDHVPSTDQLADILTKHCERVVFAQLRSKILTFG 1347
            FKARLVV G  Q+ G D G ++APVCR+ S R+  A+    +  ++ LDV  AFLN      V+ + APG    +  TG+P V  L++S+YGL QSP +WN T+D  L   G+  T SDPCVY   S +  ++ +++VDDIL+TG   +L+   + +L ++F +T +GEV  ILG++V R+   GTL +SQ  YV + L+RF M  ANP  T G   + +T   +D Q+L     K YQ+M GS+++L QCT+FD+  + +Q ++  S P Q  + A K + RYL+G+P +PI + R + +L  + D+S+       RSTTG +FF A GL+ + ++ Q +TA ST EAE+ AL+  A++ + +     EL  +   S  + SD+ GAL +A N+ +S R+KH+ +R+  +++ + R Q+ + H PS  QLADI TK+  +  FA +  +I  F 
Sbjct:   39 FKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 492          
BLAST of mRNA_H-paniculata_contig17699.4218.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 337 bits (863), Expect = 1.090e-103
Identity = 180/455 (39.56%), Postives = 277/455 (60.88%), Query Frame = 1
Query:    1 FKARLVVQGWSQKHGVDCGSTFAPVCRLESQRLLLALATAKD*TVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQPYVMSLKKSVYGLRQSPNVWNHTIDNELRSMGFAPTVSDPCVYSKGSNDTYIMFSLFVDDILVTGPTDRLLMDVRNKLMNKFTITSLGEVSLILGMEVLRNEHIGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKKYQAMVGSLIFLTQCTRFDICVSVMQAARCMSAPTQQRLVAVKRIFRYLQGHPDVPITHSRCEPKLLGYPDASYCT-----RSTTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGICLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKDWIRRHQLIIDHVPSTDQLADILTKHCERVVFAQLRSKILTFG 1347
            FKARLVV G  Q+ G D G ++APVCR+ S R+  A+    +  ++ LDV  AFLN      V+ + APG    +  TG+P V  L++S+YGL QSP +WN T+D  L   G+  T SDPCVY   S +  ++ +++VDDIL+TG   +L+   + +L ++F +T +GEV  ILG++V R+   GTL +SQ  YV ++L+RF M  ANP  TPG   + +T   +D Q+L     K YQ+M GS+++L QCTRFD+  + +Q ++  S P Q  + A K + RYL+G+P +PI + R + +L  + D+S+       RSTTG +FF A GL+ + ++ Q +TA ST EAE+ AL+  A++ + +     EL  +   S  + SD+ GAL +A N+ +S R+KH+T+R+  +++ + R Q+ + H PS  QLADI TK+  +  FA +  +I  F 
Sbjct:  403 FKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVTLRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 856          
BLAST of mRNA_H-paniculata_contig17699.4218.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 332 bits (851), Expect = 1.800e-103
Identity = 178/455 (39.12%), Postives = 276/455 (60.66%), Query Frame = 1
Query:    1 FKARLVVQGWSQKHGVDCGSTFAPVCRLESQRLLLALATAKD*TVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQPYVMSLKKSVYGLRQSPNVWNHTIDNELRSMGFAPTVSDPCVYSKGSNDTYIMFSLFVDDILVTGPTDRLLMDVRNKLMNKFTITSLGEVSLILGMEVLRNEHIGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKKYQAMVGSLIFLTQCTRFDICVSVMQAARCMSAPTQQRLVAVKRIFRYLQGHPDVPITHSRCEPKLLGYPDASYCT-----RSTTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGICLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKDWIRRHQLIIDHVPSTDQLADILTKHCERVVFAQLRSKILTFG 1347
            FKARLVV G  Q+ G D G ++APVCR+ S R+  A+    +  ++ LDV  AFLN      V+ + APG    +  TG+P V  L++S+YGL QS  +WN T+D  L  +G+  T SDPCVY   S +  ++ +++VDDIL+TG   +L+   + +L ++F +T +GEV  ILG++V R+   GTL +SQ  YV ++L+RF M  ANP  TPG   + +T   +D Q+L     K YQ+M GS+++L QCTRFD+  + +Q ++  S P Q  + A K + RYL+G+P +PI + R + +L  + D+S+       RSTTG +FF A GL+ + ++ Q +TA ST EAE+ AL+  A++ + +     EL  +   S  + SD+ GAL +A N+ +S R+KH+ +R+  +++ + R Q+ + H PS  QLADI TK+  +  FA +  +I  F 
Sbjct:  247 FKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 700          
BLAST of mRNA_H-paniculata_contig17699.4218.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 328 bits (841), Expect = 1.220e-101
Identity = 180/451 (39.91%), Postives = 269/451 (59.65%), Query Frame = 1
Query:    1 FKARLVVQGWSQKHGVDCGSTFAPVCRLESQRLLLALATAKD*TVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQPYVMSLKKSVYGLRQSPNVWNHTIDNELRSMGFAPTVSDPCVYSKGSNDTYIMFSLFVDDILVTGPTDRLLMDVRNKLMNKFTITSLGEVSLILGMEVLRNEHIGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKKYQAMVGSLIFLTQCTRFDICVSVMQAARCMSAPTQQRLVAVKRIFRYLQGHPDVPITHSRCEPKLLGYPDASYCT-----RSTTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGICLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKDWIRRHQLIIDHVPSTDQLADILTKHCERVVFAQLRSKI 1335
            FKARLV  G  Q+ G   G  +APV RL S R+L A+A      V+ LDV  AFLN      V+ + APG E+  PTTG+  V  L+KS+YGL QSP++WN  I++ L   G+  T SDPCVY   S D   + +++VDDIL+TG    ++   + +LM+ F +T +GEV  ++G+EV R+   GTL +SQ  Y   +L R+ M  ANP  TPG   + +T   +D QLL     +++QA+ GSL++L QCTR+D+  +V Q  R  + P Q  + A K + RYL+G PD+PI + + + +L  + D+S+       RSTTG +FF   GL+ + ++ Q + A +T EAEL AL+  A++ + +     E+G +   S  + SD+ GAL +A+N+ +SSR+KHI +RF  L++  + H++ + H PS   LADI TKH  +  FA +   I
Sbjct:  280 FKARLVAGGHRQRAGRHFGRNYAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQD-QLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLI 729          
BLAST of mRNA_H-paniculata_contig17699.4218.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 304 bits (778), Expect = 4.900e-93
Identity = 180/465 (38.71%), Postives = 257/465 (55.27%), Query Frame = 1
Query:    1 FKARLVVQGWSQKHGVDCGSTFAPVCRLESQRLLLALATAKD*TVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQPYVMSLKKSVYGLRQSPNVWNHTIDNELRSMGFAPTVSDPCVYSKGSNDTYIMFSLFVDDILVTGPTDRLLMDVRN-------------KLMNKFTITSLGEVSLILGMEVLRNEHIGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKKYQAMVGSLIFLTQCTRFDICVSVMQAARCMSAPTQQRLVAVKRIFRYLQGHPDVPITHSRCEPKLLGYPDASYCT-----RSTTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGICLLGICRELGL--QLTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKDWIRRHQLIIDHVPSTDQLADILTKHCERVVFAQLRSKI 1335
            FK R+V QGW+Q  G+DCGST+APVCR++S R++  +    +     +DV  AFL   ++E VF +Q PGFE      G   VM L KS+YGL QSP  W +TID  L  +GF    SDPCVY    N   I  +L+VDD+L+ G     +  + +             KL  +F +T LGE S  LGM++ R+    TL +SQ  Y  S+L+RF MS + PT TPG  ++ +    ED+ LLD   T+KYQ +VGSL+++ Q  R+DI  +  Q AR M+ P++  +VA K   RYL G  D  IT+ +   KL  + D+++       +ST+  +   AN  + F S LQ +TA ST EAEL+A A   K+ +    +  ELG   +     V  DN   LH   N ++SSR+KHI +RF  +++ +   ++ I +VP+ D LADI TKH  +  F  L   I
Sbjct:  191 FKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFE-VKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLI 653          
BLAST of mRNA_H-paniculata_contig17699.4218.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 317 bits (812), Expect = 9.470e-93
Identity = 182/455 (40.00%), Postives = 259/455 (56.92%), Query Frame = 1
Query:    1 FKARLVVQGWSQKHGVDCGSTFAPVCRLESQRLLLALATAKD*TVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQPYVMSLKKSVYGLRQSPNVWNHTIDNELRSMGFAPTVSDPCVYSKGSNDTYIMFSLFVDDILVTGPTDRLLMDVRNKLMNKFTITSLGEVSLILGMEVLRNEHIGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKKYQAMVGSLIFLTQCTRFDICVSVMQAARCMSAPTQQRLVAVKRIFRYLQGHPDVPITHSRCEPKLLGYPDASYCT-----RSTTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGICLLGICRELGL--QLTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKDWIRRHQLIIDHVPSTDQLADILTKHCERVVFAQLRSKILTF 1344
            FK R+V QGW+Q  G+DCGST+APVCR++S R++  +    +     +DV  AFL   ++E VF +Q PGFE      G   VM L KS+YGL QSP  W +TID  L  +GF    SDPCVY    N   I  +L+VDD+L+ G     +  V+ KL  +F +T LGE SL+LGME+ R+    TL +SQ  Y  S+L+RF +S + PT TPG  ++ +    ED+ LLD   T+KYQ +VGSL+++ Q  R+DI  +  Q AR M+ P++  +VA K   RYL G  D  IT+ +   KL  + D+++       +ST+  +   AN  + F S LQ +TA ST EAEL+A A    + +    +  ELG   +     V  DN   LH   N ++SSR+KHI +RF  +++ +   ++ I +VP+ D LADI TKH  +  F  L   I  F
Sbjct: 1212 FKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFE-VKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNF 1664          
BLAST of mRNA_H-paniculata_contig17699.4218.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 8.120e-92
Identity = 177/463 (38.23%), Postives = 273/463 (58.96%), Query Frame = 1
Query:    1 FKARLVVQGWSQKHGVDCGSTFAPVCRLESQRLLLALATAKD*TVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQPYVMSLKKSVYGLRQSPNVWNHTIDNELRSMGFAPTVSDPCVYSKGSNDTYIMFSLFVDDILVTGPTDRLLMDVRNKLMNKFTITSLGEVSLILGMEVLRNEHIGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKKYQAMVGSLIFLTQCTRFDICVSVMQAARCMSAPTQQRLVAVKRIFRYLQGHPDVPITHSRCEPKLLG-------YPDASYCT-----RSTTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQG-ICLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKDWIRRHQLIIDHVPSTDQLADILTKHCERVVFAQLRSKILTFG 1347
            FKARL V G  Q+ G D  +  APVCR+ S R+  A+    +  ++ LDV  AFLN      V+ + APG    +  T +P V  L++S+YGL QSP +WN T+D  L   G+  T SDPCVY   S ++ ++ S++VDDIL+TG   +L+   + +L ++F +T +GEV  ILG++V R+   GTL +SQ  YV ++L+RF M  ANP  TPG   + +T   +D Q+L     K YQ+M GS+++L QCTRFD+  + +Q ++  S P Q  + A K + RYL+G+P +PI + R + +L         + D+S+       RSTTG +FF A GL+ + ++ Q +TA ST EAE+ AL+  A++  + +     EL  +   S  + SD+ GAL +A N+ +S R+KH+ +R+  +++ + R Q+ + H PS  QLADI TK+  +  FA +  +I  F 
Sbjct:  628 FKARLAVGGHRQEPGQDYRN--APVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATEEPMVYKLERSLYGLLQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNSIVISSVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVPRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKREQIRLAAEQIRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 1087          
BLAST of mRNA_H-paniculata_contig17699.4218.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 303 bits (777), Expect = 3.550e-88
Identity = 166/413 (40.19%), Postives = 249/413 (60.29%), Query Frame = 1
Query:    1 FKARLVVQGWSQKHGVDCGSTFAPVCRLESQRLLLALATAKD*TVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQPYVMSLKKSVYGLRQSPNVWNHTIDNELRSMGFAPTVSDPCVYSKGSNDTYIMFSLFVDDILVTGPTDRLLMDVRNKLMNKFTITSLGEVSLILGMEVLRNEHIGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKKYQAMVGSLIFLTQCTRFDICVSVMQAARCMSAPTQQRLVAVKRIFRYLQGHPDVPITHSRCEPKLLGYPDASYCT-----RSTTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGICLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKD 1221
            FKARLV  G  Q+ G   G  +APV RL S R+L A+A      V+ LDV  AFLN      V+ + APG E+  PTTG+  V  L+KS+YGL QSP++WN  I++ L   G+  T SDPCVY   S D   + +++VDDIL+TG    ++   + +LM+ F +T +GEV  ++G+EV R+   GTL +SQ  Y   +L R+ M  ANP  TPG   + +T   +D QLL     +++QA+ GSL++L QCTR+D+  +V Q  R  + P Q  + A K + RYL+G PD+PI + + + +L  + D+S+       RSTTG +FF   GL+ + ++ Q + A +T EAEL AL+  A++ + +     E+G +   S  + SD+ GAL +A+N+ +SSR+KHI +RF  L++
Sbjct: 1059 FKARLVAGGHRQRAGRHFGRNYAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQD-QLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRN 1470          
BLAST of mRNA_H-paniculata_contig17699.4218.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE)

HSP 1 Score: 290 bits (741), Expect = 7.430e-86
Identity = 174/455 (38.24%), Postives = 251/455 (55.16%), Query Frame = 1
Query:    1 FKARLVVQGWSQKHGVDCGSTFAPVCRLESQRLLLALATAKD*TVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQPYVMSLKKSVYGLRQSPNVWNHTIDNELRSMGFAPTVSDPCVYSKGSNDTYIMFSLFVDDILVTGPTDRLLMDVRNKLMNKFTITSLGEVSLILGMEVLRNEHIGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKKYQAMVGSLIFLTQCTRFDICVSVMQAARCMSAPTQQRLVAVKRIFRYLQGHPDVPITHSRCEPKLLGYPDASYCT-----RSTTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGICLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKDWIRRHQLIIDHVPSTDQLADILTKHCERVVFAQLRSKILTFG 1347
            FK RLVVQG  Q+ G+D G  +A VCR+ S R+  A+A  +   V+ +DV VAFL   + + V+ K APG +   P TG   V  L++S+YGL QSP +W  TID  L  +GF PT SDPCVY  GS DT ++ +L+V+DIL++G    L+ D++ +L ++F IT +GEV LILGM+V R+   GTL +SQ  YV S+L+   M + NP                  +LL AA +K YQ++ GSL++L QC R+D   +V Q  R  S P +    A K   RY++G PD+ I   R   ++  + D+S+       +STTG                         E+EL A++  AK+   L  +   L  + L    + SD+ G L LAAN+ +SSR+KHI +RF  L++ I+   + + HVP+   LADI TKH +R  F  +  +I  FG
Sbjct:  441 FKVRLVVQGHVQESGIDDGRRYARVCRIGSVRIFFAIACERGWPVWQMDVAVAFLQPTIDKDVWVKPAPGQDAKDPATGGIMVYKLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISGKDPDLVADLKKELQDRFEITDIGEVRLILGMKVTRSYENGTLVVSQKGYVKSILESLGMENCNPPA---------------DELLGAAESKLYQSITGSLLYLAQCKRYDQSYAVNQLTRACSKPARAHTTAAKHALRYIRGTPDLLIIFKRGRFRVAAFADSSFGAIPDNRKSTTGLQ----------------------VESELQAISYGAKEAAYLSSLLMALKFENLKPISIYSDSSGTLSLAANTMFSSRTKHIALRFFVLQESIKPRHIAVHHVPTQAMLADIATKHLDRNKFNSIIHQIKDFG 858          
BLAST of mRNA_H-paniculata_contig17699.4218.1 vs. uniprot
Match: A0A6H5JDU8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU8_9PHAE)

HSP 1 Score: 279 bits (714), Expect = 8.660e-85
Identity = 156/394 (39.59%), Postives = 235/394 (59.64%), Query Frame = 1
Query:    1 FKARLVVQGWSQKHGVDCGSTFAPVCRLESQRLLLALATAKD*TVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQPYVMSLKKSVYGLRQSPNVWNHTIDNELRSMGFAPTVSDPCVYSKGSNDTYIMFSLFVDDILVTGPTDRLLMDVRNKLMNKFTITSLGEVSLILGMEVLRNEHIGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKKYQAMVGSLIFLTQCTRFDICVSVMQAARCMSAPTQQRLVAVKRIFRYLQGHPDVPITHSRCEPKLLGYPDASYCT-----RSTTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGICLLGICRELGLQLTS-CEVRSDNRGALHLAAN 1164
            FKA LVV G  Q+ G D GS++APVCR+ S R+   +    +  ++ LDV VAFLN      V+ + APG    +  TG+P V  L++S+YGL QSP +WN T++  L+  G+  T  DPCVY   S +  ++ +++VDDIL+TG  D+ L+D + +L ++F +T +GEV  ILG++V R+   GTL +SQ  YV ++L+RF M  ANP  T G   + +T   +D Q+L     K YQ+M  S+++L QCTRFD+  + +Q ++  S P Q  L A K + RYL+G+P +PI + R +  L    D+S+       RSTTG +FF A GL+ + ++ Q +TA ST EAE+ AL+  A++ I +     E   +      + SD+ GAL +A N
Sbjct:  140 FKAHLVVGGHRQEPGQDYGSSYAPVCRIGSIRMTCTIGCHNNWPIYQLDVVVAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLNESLKVFGWKRTQYDPCVYMYTSGNIIVILTVYVDDILITGG-DQQLVDQKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEYYVNTLLERFGMQEANPVSTLGYGAEISTNQPQD-QILGPTDKKIYQSMTRSILYLAQCTRFDLSYAALQLSKACSNPAQVNLTAAKHVLRYLRGNPVLPIVYKRGQFWLAASTDSSFGANLDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSFSAREAIYISNFMTEFNFKTFGWVPINSDSTGALTVAGN 531          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17699.4218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQD0_9PHAE5.390e-10438.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE1.090e-10339.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE1.800e-10339.12Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF46_9PHAE1.220e-10139.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JME8_9PHAE4.900e-9338.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE9.470e-9340.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJR8_9PHAE8.120e-9238.23Integrase catalytic domain-containing protein n=11... [more]
A0A6H5KHG5_9PHAE3.550e-8840.19Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A6H5K9R3_9PHAE7.430e-8638.24Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JDU8_9PHAE8.660e-8539.59Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17699contigH-paniculata_contig17699:4079..5431 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score206.5
Seed ortholog evalue2.2e-50
Seed eggNOG ortholog4081.Solyc11g062200.1.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,44UC5@71274,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Exons1
Model size1353
Cds size1104
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929382.6274345-CDS-H-paniculata_contig17699:4078..51821622929382.6274345-CDS-H-paniculata_contig17699:4078..5182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17699 4079..5182 -
1691480839.2178462-CDS-H-paniculata_contig17699:4078..51821691480839.2178462-CDS-H-paniculata_contig17699:4078..5182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17699 4079..5182 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929382.6482928-UTR-H-paniculata_contig17699:5182..54311622929382.6482928-UTR-H-paniculata_contig17699:5182..5431Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17699 5183..5431 -
1691480839.228099-UTR-H-paniculata_contig17699:5182..54311691480839.228099-UTR-H-paniculata_contig17699:5182..5431Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17699 5183..5431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17699.4218.1prot_H-paniculata_contig17699.4218.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17699 4079..5182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17699.4218.1

>prot_H-paniculata_contig17699.4218.1 ID=prot_H-paniculata_contig17699.4218.1|Name=mRNA_H-paniculata_contig17699.4218.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=368bp
MSLKKSVYGLRQSPNVWNHTIDNELRSMGFAPTVSDPCVYSKGSNDTYIM
FSLFVDDILVTGPTDRLLMDVRNKLMNKFTITSLGEVSLILGMEVLRNEH
IGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAA
ATKKYQAMVGSLIFLTQCTRFDICVSVMQAARCMSAPTQQRLVAVKRIFR
YLQGHPDVPITHSRCEPKLLGYPDASYCTRSTTGTMFFFANGLVHFSSRL
QKITATSTTEAELIALATCAKQGICLLGICRELGLQLTSCEVRSDNRGAL
HLAANSNYSSRSKHITIRFAALKDWIRRHQLIIDHVPSTDQLADILTKHC
ERVVFAQLRSKILTFGK*
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mRNA from alignment at H-paniculata_contig17699:4079..5431-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17699.4218.1 ID=mRNA_H-paniculata_contig17699.4218.1|Name=mRNA_H-paniculata_contig17699.4218.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1353bp|location=Sequence derived from alignment at H-paniculata_contig17699:4079..5431- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCAAGGCTCGGCTCGTGGTACAAGGCTGGTCGCAAAAACATGGGGTTGA CTGCGGGAGTACCTTTGCACCTGTATGCAGACTGGAGAGCCAGCGACTAC TGCTAGCACTAGCGACGGCAAAGGATTAGACCGTATTTGCACTAGATGTT CAAGTTGCTTTTCTAAACGGCAAGCTGAAGGAGAGCGTCTTCTGCAAACA AGCACCTGGTTTTGAGAAGACTCACCCTACTACTGGACAACCCTACGTGA TGAGTTTGAAGAAATCGGTATATGGGTTGCGCCAAAGCCCAAATGTGTGG AATCATACAATCGACAACGAGCTGAGGAGCATGGGTTTTGCACCAACTGT CTCGGACCCCTGTGTCTACAGTAAAGGAAGCAACGACACCTACATTATGT TTAGTCTTTTCGTCGACGATATACTAGTGACAGGACCAACGGACAGGCTG CTAATGGACGTGCGCAACAAGCTGATGAATAAATTTACTATCACGAGCCT TGGAGAAGTATCGCTTATACTTGGGATGGAGGTACTACGCAACGAACATA TCGGCACTCTACAGCTATCACAGCACAAGTATGTACTATCTGTTTTGGAC AGGTTCAACATGTCATCAGCGAATCCCACGAAAACACCTGGAGTTAAAAC GGACTCCACTACTACTACTAGCGAAGACAGTCAACTACTGGATGCAGCAG CTACAAAGAAGTATCAAGCCATGGTAGGGAGCCTCATCTTCTTGACCCAG TGTACAAGATTCGACATCTGCGTCAGCGTCATGCAAGCGGCACGCTGCAT GAGCGCACCAACTCAACAGCGTCTAGTCGCAGTAAAGCGGATTTTTCGGT ATTTACAGGGTCACCCAGATGTTCCCATCACGCACAGCAGATGTGAGCCG AAACTACTCGGCTATCCTGATGCATCATACTGCACACGATCTACAACAGG CACTATGTTCTTCTTTGCCAACGGATTGGTACACTTCTCATCTCGACTAC AGAAGATAACGGCTACAAGCACAACTGAGGCAGAACTCATCGCACTGGCT ACATGCGCAAAACAAGGCATTTGCCTTCTGGGTATCTGCAGGGAGCTGGG TCTTCAACTGACTAGCTGCGAGGTTCGAAGTGACAACCGGGGAGCTCTTC ATCTCGCGGCCAACAGCAATTACTCAAGCCGCAGCAAACACATCACCATC AGGTTCGCAGCACTGAAAGACTGGATCAGGAGACATCAGCTTATCATCGA CCATGTGCCAAGTACTGATCAGCTAGCTGACATTCTCACCAAACACTGCG AAAGAGTGGTGTTCGCCCAACTACGGAGCAAAATATTGACTTTTGGAAAA TGA
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Coding sequence (CDS) from alignment at H-paniculata_contig17699:4079..5431-

>mRNA_H-paniculata_contig17699.4218.1 ID=mRNA_H-paniculata_contig17699.4218.1|Name=mRNA_H-paniculata_contig17699.4218.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2208bp|location=Sequence derived from alignment at H-paniculata_contig17699:4079..5431- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTTTGAAGAAATCGGTATATGGGTTGCGCCAAAGCCCAAATGTGTG
GAATCATACAATCGACAACGAGCTGAGGAGCATGGGTTTTGCACCAACTG
TCTCGGACCCCTGTGTCTACAGTAAAGGAAGCAACGACACCTACATTATG
TTTAGTCTTTTCGTCGACGATATACTAGTGACAGGACCAACGGACAGGCT
GCTAATGGACGTGCGCAACAAGCTGATGAATAAATTTACTATCACGAGCC
TTGGAGAAGTATCGCTTATACTTGGGATGGAGGTACTACGCAACGAACAT
ATCGGCACTCTACAGCTATCACAGCACAAGTATGTACTATCTGTTTTGGA
CAGGTTCAACATGTCATCAGCGAATCCCACGAAAACACCTGGAGTTAAAA
CGGACTCCACTACTACTACTAGCGAAGACAGTCAACTACTGGATGCAGCA
GCTACAAAGAAGTATCAAGCCATGGTAGGGAGCCTCATCTTCTTGACCCA
GTGTACAAGATTCGACATCTGCGTCAGCGTCATGCAAGCGGCACGCTGCA
TGAGCGCACCAACTCAACAGCGTCTAGTCGCAGTAAAGCGGATTTTTCGG
TATTTACAGGGTCACCCAGATGTTCCCATCACGCACAGCAGATGTGAGCC
GAAACTACTCGGCTATCCTGATGCATCATACTGCACACGATCTACAACAG
GCACTATGTTCTTCTTTGCCAACGGATTGGTACACTTCTCATCTCGACTA
CAGAAGATAACGGCTACAAGCACAACTGAGGCAGAACTCATCGCACTGGC
TACATGCGCAAAACAAGGCATTTGCCTTCTGGGTATCTGCAGGGAGCTGG
GTCTTCAACTGACTAGCTGCGAGGTTCGAAGTGACAACCGGGGAGCTCTT
CATCTCGCGGCCAACAGCAATTACTCAAGCCGCAGCAAACACATCACCAT
CAGGTTCGCAGCACTGAAAGACTGGATCAGGAGACATCAGCTTATCATCG
ACCATGTGCCAAGTACTGATCAGCTAGCTGACATTCTCACCAAACACTGC
GAAAGAGTGGTGTTCGCCCAACTACGGAGCAAAATATTGACTTTTGGAAA
ATGAATGAGTTTGAAGAAATCGGTATATGGGTTGCGCCAAAGCCCAAATG
TGTGGAATCATACAATCGACAACGAGCTGAGGAGCATGGGTTTTGCACCA
ACTGTCTCGGACCCCTGTGTCTACAGTAAAGGAAGCAACGACACCTACAT
TATGTTTAGTCTTTTCGTCGACGATATACTAGTGACAGGACCAACGGACA
GGCTGCTAATGGACGTGCGCAACAAGCTGATGAATAAATTTACTATCACG
AGCCTTGGAGAAGTATCGCTTATACTTGGGATGGAGGTACTACGCAACGA
ACATATCGGCACTCTACAGCTATCACAGCACAAGTATGTACTATCTGTTT
TGGACAGGTTCAACATGTCATCAGCGAATCCCACGAAAACACCTGGAGTT
AAAACGGACTCCACTACTACTACTAGCGAAGACAGTCAACTACTGGATGC
AGCAGCTACAAAGAAGTATCAAGCCATGGTAGGGAGCCTCATCTTCTTGA
CCCAGTGTACAAGATTCGACATCTGCGTCAGCGTCATGCAAGCGGCACGC
TGCATGAGCGCACCAACTCAACAGCGTCTAGTCGCAGTAAAGCGGATTTT
TCGGTATTTACAGGGTCACCCAGATGTTCCCATCACGCACAGCAGATGTG
AGCCGAAACTACTCGGCTATCCTGATGCATCATACTGCACACGATCTACA
ACAGGCACTATGTTCTTCTTTGCCAACGGATTGGTACACTTCTCATCTCG
ACTACAGAAGATAACGGCTACAAGCACAACTGAGGCAGAACTCATCGCAC
TGGCTACATGCGCAAAACAAGGCATTTGCCTTCTGGGTATCTGCAGGGAG
CTGGGTCTTCAACTGACTAGCTGCGAGGTTCGAAGTGACAACCGGGGAGC
TCTTCATCTCGCGGCCAACAGCAATTACTCAAGCCGCAGCAAACACATCA
CCATCAGGTTCGCAGCACTGAAAGACTGGATCAGGAGACATCAGCTTATC
ATCGACCATGTGCCAAGTACTGATCAGCTAGCTGACATTCTCACCAAACA
CTGCGAAAGAGTGGTGTTCGCCCAACTACGGAGCAAAATATTGACTTTTG
GAAAATGA
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