mRNA_H-paniculata_contig17699.4218.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig17699.4218.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE) HSP 1 Score: 327 bits (838), Expect = 5.390e-104 Identity = 177/455 (38.90%), Postives = 274/455 (60.22%), Query Frame = 1
Query: 1 FKARLVVQGWSQKHGVDCGSTFAPVCRLESQRLLLALATAKD*TVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQPYVMSLKKSVYGLRQSPNVWNHTIDNELRSMGFAPTVSDPCVYSKGSNDTYIMFSLFVDDILVTGPTDRLLMDVRNKLMNKFTITSLGEVSLILGMEVLRNEHIGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKKYQAMVGSLIFLTQCTRFDICVSVMQAARCMSAPTQQRLVAVKRIFRYLQGHPDVPITHSRCEPKLLGYPDASYCT-----RSTTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGICLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKDWIRRHQLIIDHVPSTDQLADILTKHCERVVFAQLRSKILTFG 1347
FKARLVV G Q+ G D G ++APVCR+ S R+ A+ + ++ LDV AFLN V+ + APG + TG+P V L++S+YGL QSP +WN T+D L G+ T SDPCVY S + ++ +++VDDIL+TG +L+ + +L ++F +T +GEV ILG++V R+ GTL +SQ YV + L+RF M ANP T G + +T +D Q+L K YQ+M GS+++L QCT+FD+ + +Q ++ S P Q + A K + RYL+G+P +PI + R + +L + D+S+ RSTTG +FF A GL+ + ++ Q +TA ST EAE+ AL+ A++ + + EL + S + SD+ GAL +A N+ +S R+KH+ +R+ +++ + R Q+ + H PS QLADI TK+ + FA + +I F
Sbjct: 39 FKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 492
BLAST of mRNA_H-paniculata_contig17699.4218.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE) HSP 1 Score: 337 bits (863), Expect = 1.090e-103 Identity = 180/455 (39.56%), Postives = 277/455 (60.88%), Query Frame = 1
Query: 1 FKARLVVQGWSQKHGVDCGSTFAPVCRLESQRLLLALATAKD*TVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQPYVMSLKKSVYGLRQSPNVWNHTIDNELRSMGFAPTVSDPCVYSKGSNDTYIMFSLFVDDILVTGPTDRLLMDVRNKLMNKFTITSLGEVSLILGMEVLRNEHIGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKKYQAMVGSLIFLTQCTRFDICVSVMQAARCMSAPTQQRLVAVKRIFRYLQGHPDVPITHSRCEPKLLGYPDASYCT-----RSTTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGICLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKDWIRRHQLIIDHVPSTDQLADILTKHCERVVFAQLRSKILTFG 1347
FKARLVV G Q+ G D G ++APVCR+ S R+ A+ + ++ LDV AFLN V+ + APG + TG+P V L++S+YGL QSP +WN T+D L G+ T SDPCVY S + ++ +++VDDIL+TG +L+ + +L ++F +T +GEV ILG++V R+ GTL +SQ YV ++L+RF M ANP TPG + +T +D Q+L K YQ+M GS+++L QCTRFD+ + +Q ++ S P Q + A K + RYL+G+P +PI + R + +L + D+S+ RSTTG +FF A GL+ + ++ Q +TA ST EAE+ AL+ A++ + + EL + S + SD+ GAL +A N+ +S R+KH+T+R+ +++ + R Q+ + H PS QLADI TK+ + FA + +I F
Sbjct: 403 FKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVTLRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 856
BLAST of mRNA_H-paniculata_contig17699.4218.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE) HSP 1 Score: 332 bits (851), Expect = 1.800e-103 Identity = 178/455 (39.12%), Postives = 276/455 (60.66%), Query Frame = 1
Query: 1 FKARLVVQGWSQKHGVDCGSTFAPVCRLESQRLLLALATAKD*TVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQPYVMSLKKSVYGLRQSPNVWNHTIDNELRSMGFAPTVSDPCVYSKGSNDTYIMFSLFVDDILVTGPTDRLLMDVRNKLMNKFTITSLGEVSLILGMEVLRNEHIGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKKYQAMVGSLIFLTQCTRFDICVSVMQAARCMSAPTQQRLVAVKRIFRYLQGHPDVPITHSRCEPKLLGYPDASYCT-----RSTTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGICLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKDWIRRHQLIIDHVPSTDQLADILTKHCERVVFAQLRSKILTFG 1347
FKARLVV G Q+ G D G ++APVCR+ S R+ A+ + ++ LDV AFLN V+ + APG + TG+P V L++S+YGL QS +WN T+D L +G+ T SDPCVY S + ++ +++VDDIL+TG +L+ + +L ++F +T +GEV ILG++V R+ GTL +SQ YV ++L+RF M ANP TPG + +T +D Q+L K YQ+M GS+++L QCTRFD+ + +Q ++ S P Q + A K + RYL+G+P +PI + R + +L + D+S+ RSTTG +FF A GL+ + ++ Q +TA ST EAE+ AL+ A++ + + EL + S + SD+ GAL +A N+ +S R+KH+ +R+ +++ + R Q+ + H PS QLADI TK+ + FA + +I F
Sbjct: 247 FKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 700
BLAST of mRNA_H-paniculata_contig17699.4218.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 328 bits (841), Expect = 1.220e-101 Identity = 180/451 (39.91%), Postives = 269/451 (59.65%), Query Frame = 1
Query: 1 FKARLVVQGWSQKHGVDCGSTFAPVCRLESQRLLLALATAKD*TVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQPYVMSLKKSVYGLRQSPNVWNHTIDNELRSMGFAPTVSDPCVYSKGSNDTYIMFSLFVDDILVTGPTDRLLMDVRNKLMNKFTITSLGEVSLILGMEVLRNEHIGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKKYQAMVGSLIFLTQCTRFDICVSVMQAARCMSAPTQQRLVAVKRIFRYLQGHPDVPITHSRCEPKLLGYPDASYCT-----RSTTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGICLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKDWIRRHQLIIDHVPSTDQLADILTKHCERVVFAQLRSKI 1335
FKARLV G Q+ G G +APV RL S R+L A+A V+ LDV AFLN V+ + APG E+ PTTG+ V L+KS+YGL QSP++WN I++ L G+ T SDPCVY S D + +++VDDIL+TG ++ + +LM+ F +T +GEV ++G+EV R+ GTL +SQ Y +L R+ M ANP TPG + +T +D QLL +++QA+ GSL++L QCTR+D+ +V Q R + P Q + A K + RYL+G PD+PI + + + +L + D+S+ RSTTG +FF GL+ + ++ Q + A +T EAEL AL+ A++ + + E+G + S + SD+ GAL +A+N+ +SSR+KHI +RF L++ + H++ + H PS LADI TKH + FA + I
Sbjct: 280 FKARLVAGGHRQRAGRHFGRNYAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQD-QLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLI 729
BLAST of mRNA_H-paniculata_contig17699.4218.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE) HSP 1 Score: 304 bits (778), Expect = 4.900e-93 Identity = 180/465 (38.71%), Postives = 257/465 (55.27%), Query Frame = 1
Query: 1 FKARLVVQGWSQKHGVDCGSTFAPVCRLESQRLLLALATAKD*TVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQPYVMSLKKSVYGLRQSPNVWNHTIDNELRSMGFAPTVSDPCVYSKGSNDTYIMFSLFVDDILVTGPTDRLLMDVRN-------------KLMNKFTITSLGEVSLILGMEVLRNEHIGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKKYQAMVGSLIFLTQCTRFDICVSVMQAARCMSAPTQQRLVAVKRIFRYLQGHPDVPITHSRCEPKLLGYPDASYCT-----RSTTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGICLLGICRELGL--QLTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKDWIRRHQLIIDHVPSTDQLADILTKHCERVVFAQLRSKI 1335
FK R+V QGW+Q G+DCGST+APVCR++S R++ + + +DV AFL ++E VF +Q PGFE G VM L KS+YGL QSP W +TID L +GF SDPCVY N I +L+VDD+L+ G + + + KL +F +T LGE S LGM++ R+ TL +SQ Y S+L+RF MS + PT TPG ++ + ED+ LLD T+KYQ +VGSL+++ Q R+DI + Q AR M+ P++ +VA K RYL G D IT+ + KL + D+++ +ST+ + AN + F S LQ +TA ST EAEL+A A K+ + + ELG + V DN LH N ++SSR+KHI +RF +++ + ++ I +VP+ D LADI TKH + F L I
Sbjct: 191 FKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFE-VKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLI 653
BLAST of mRNA_H-paniculata_contig17699.4218.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 317 bits (812), Expect = 9.470e-93 Identity = 182/455 (40.00%), Postives = 259/455 (56.92%), Query Frame = 1
Query: 1 FKARLVVQGWSQKHGVDCGSTFAPVCRLESQRLLLALATAKD*TVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQPYVMSLKKSVYGLRQSPNVWNHTIDNELRSMGFAPTVSDPCVYSKGSNDTYIMFSLFVDDILVTGPTDRLLMDVRNKLMNKFTITSLGEVSLILGMEVLRNEHIGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKKYQAMVGSLIFLTQCTRFDICVSVMQAARCMSAPTQQRLVAVKRIFRYLQGHPDVPITHSRCEPKLLGYPDASYCT-----RSTTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGICLLGICRELGL--QLTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKDWIRRHQLIIDHVPSTDQLADILTKHCERVVFAQLRSKILTF 1344
FK R+V QGW+Q G+DCGST+APVCR++S R++ + + +DV AFL ++E VF +Q PGFE G VM L KS+YGL QSP W +TID L +GF SDPCVY N I +L+VDD+L+ G + V+ KL +F +T LGE SL+LGME+ R+ TL +SQ Y S+L+RF +S + PT TPG ++ + ED+ LLD T+KYQ +VGSL+++ Q R+DI + Q AR M+ P++ +VA K RYL G D IT+ + KL + D+++ +ST+ + AN + F S LQ +TA ST EAEL+A A + + + ELG + V DN LH N ++SSR+KHI +RF +++ + ++ I +VP+ D LADI TKH + F L I F
Sbjct: 1212 FKGRVVAQGWNQVPGLDCGSTYAPVCRIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFE-VKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNF 1664
BLAST of mRNA_H-paniculata_contig17699.4218.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE) HSP 1 Score: 310 bits (793), Expect = 8.120e-92 Identity = 177/463 (38.23%), Postives = 273/463 (58.96%), Query Frame = 1
Query: 1 FKARLVVQGWSQKHGVDCGSTFAPVCRLESQRLLLALATAKD*TVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQPYVMSLKKSVYGLRQSPNVWNHTIDNELRSMGFAPTVSDPCVYSKGSNDTYIMFSLFVDDILVTGPTDRLLMDVRNKLMNKFTITSLGEVSLILGMEVLRNEHIGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKKYQAMVGSLIFLTQCTRFDICVSVMQAARCMSAPTQQRLVAVKRIFRYLQGHPDVPITHSRCEPKLLG-------YPDASYCT-----RSTTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQG-ICLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKDWIRRHQLIIDHVPSTDQLADILTKHCERVVFAQLRSKILTFG 1347
FKARL V G Q+ G D + APVCR+ S R+ A+ + ++ LDV AFLN V+ + APG + T +P V L++S+YGL QSP +WN T+D L G+ T SDPCVY S ++ ++ S++VDDIL+TG +L+ + +L ++F +T +GEV ILG++V R+ GTL +SQ YV ++L+RF M ANP TPG + +T +D Q+L K YQ+M GS+++L QCTRFD+ + +Q ++ S P Q + A K + RYL+G+P +PI + R + +L + D+S+ RSTTG +FF A GL+ + ++ Q +TA ST EAE+ AL+ A++ + + EL + S + SD+ GAL +A N+ +S R+KH+ +R+ +++ + R Q+ + H PS QLADI TK+ + FA + +I F
Sbjct: 628 FKARLAVGGHRQEPGQDYRN--APVCRIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATEEPMVYKLERSLYGLLQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNSIVISSVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVPRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQD-QILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKREQIRLAAEQIRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 1087
BLAST of mRNA_H-paniculata_contig17699.4218.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE) HSP 1 Score: 303 bits (777), Expect = 3.550e-88 Identity = 166/413 (40.19%), Postives = 249/413 (60.29%), Query Frame = 1
Query: 1 FKARLVVQGWSQKHGVDCGSTFAPVCRLESQRLLLALATAKD*TVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQPYVMSLKKSVYGLRQSPNVWNHTIDNELRSMGFAPTVSDPCVYSKGSNDTYIMFSLFVDDILVTGPTDRLLMDVRNKLMNKFTITSLGEVSLILGMEVLRNEHIGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKKYQAMVGSLIFLTQCTRFDICVSVMQAARCMSAPTQQRLVAVKRIFRYLQGHPDVPITHSRCEPKLLGYPDASYCT-----RSTTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGICLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKD 1221
FKARLV G Q+ G G +APV RL S R+L A+A V+ LDV AFLN V+ + APG E+ PTTG+ V L+KS+YGL QSP++WN I++ L G+ T SDPCVY S D + +++VDDIL+TG ++ + +LM+ F +T +GEV ++G+EV R+ GTL +SQ Y +L R+ M ANP TPG + +T +D QLL +++QA+ GSL++L QCTR+D+ +V Q R + P Q + A K + RYL+G PD+PI + + + +L + D+S+ RSTTG +FF GL+ + ++ Q + A +T EAEL AL+ A++ + + E+G + S + SD+ GAL +A+N+ +SSR+KHI +RF L++
Sbjct: 1059 FKARLVAGGHRQRAGRHFGRNYAPVTRLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQD-QLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRN 1470
BLAST of mRNA_H-paniculata_contig17699.4218.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE) HSP 1 Score: 290 bits (741), Expect = 7.430e-86 Identity = 174/455 (38.24%), Postives = 251/455 (55.16%), Query Frame = 1
Query: 1 FKARLVVQGWSQKHGVDCGSTFAPVCRLESQRLLLALATAKD*TVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQPYVMSLKKSVYGLRQSPNVWNHTIDNELRSMGFAPTVSDPCVYSKGSNDTYIMFSLFVDDILVTGPTDRLLMDVRNKLMNKFTITSLGEVSLILGMEVLRNEHIGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKKYQAMVGSLIFLTQCTRFDICVSVMQAARCMSAPTQQRLVAVKRIFRYLQGHPDVPITHSRCEPKLLGYPDASYCT-----RSTTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGICLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKDWIRRHQLIIDHVPSTDQLADILTKHCERVVFAQLRSKILTFG 1347
FK RLVVQG Q+ G+D G +A VCR+ S R+ A+A + V+ +DV VAFL + + V+ K APG + P TG V L++S+YGL QSP +W TID L +GF PT SDPCVY GS DT ++ +L+V+DIL++G L+ D++ +L ++F IT +GEV LILGM+V R+ GTL +SQ YV S+L+ M + NP +LL AA +K YQ++ GSL++L QC R+D +V Q R S P + A K RY++G PD+ I R ++ + D+S+ +STTG E+EL A++ AK+ L + L + L + SD+ G L LAAN+ +SSR+KHI +RF L++ I+ + + HVP+ LADI TKH +R F + +I FG
Sbjct: 441 FKVRLVVQGHVQESGIDDGRRYARVCRIGSVRIFFAIACERGWPVWQMDVAVAFLQPTIDKDVWVKPAPGQDAKDPATGGIMVYKLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISGKDPDLVADLKKELQDRFEITDIGEVRLILGMKVTRSYENGTLVVSQKGYVKSILESLGMENCNPPA---------------DELLGAAESKLYQSITGSLLYLAQCKRYDQSYAVNQLTRACSKPARAHTTAAKHALRYIRGTPDLLIIFKRGRFRVAAFADSSFGAIPDNRKSTTGLQ----------------------VESELQAISYGAKEAAYLSSLLMALKFENLKPISIYSDSSGTLSLAANTMFSSRTKHIALRFFVLQESIKPRHIAVHHVPTQAMLADIATKHLDRNKFNSIIHQIKDFG 858
BLAST of mRNA_H-paniculata_contig17699.4218.1 vs. uniprot
Match: A0A6H5JDU8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU8_9PHAE) HSP 1 Score: 279 bits (714), Expect = 8.660e-85 Identity = 156/394 (39.59%), Postives = 235/394 (59.64%), Query Frame = 1
Query: 1 FKARLVVQGWSQKHGVDCGSTFAPVCRLESQRLLLALATAKD*TVFALDVQVAFLNGKLKESVFCKQAPGFEKTHPTTGQPYVMSLKKSVYGLRQSPNVWNHTIDNELRSMGFAPTVSDPCVYSKGSNDTYIMFSLFVDDILVTGPTDRLLMDVRNKLMNKFTITSLGEVSLILGMEVLRNEHIGTLQLSQHKYVLSVLDRFNMSSANPTKTPGVKTDSTTTTSEDSQLLDAAATKKYQAMVGSLIFLTQCTRFDICVSVMQAARCMSAPTQQRLVAVKRIFRYLQGHPDVPITHSRCEPKLLGYPDASYCT-----RSTTGTMFFFANGLVHFSSRLQKITATSTTEAELIALATCAKQGICLLGICRELGLQLTS-CEVRSDNRGALHLAAN 1164
FKA LVV G Q+ G D GS++APVCR+ S R+ + + ++ LDV VAFLN V+ + APG + TG+P V L++S+YGL QSP +WN T++ L+ G+ T DPCVY S + ++ +++VDDIL+TG D+ L+D + +L ++F +T +GEV ILG++V R+ GTL +SQ YV ++L+RF M ANP T G + +T +D Q+L K YQ+M S+++L QCTRFD+ + +Q ++ S P Q L A K + RYL+G+P +PI + R + L D+S+ RSTTG +FF A GL+ + ++ Q +TA ST EAE+ AL+ A++ I + E + + SD+ GAL +A N
Sbjct: 140 FKAHLVVGGHRQEPGQDYGSSYAPVCRIGSIRMTCTIGCHNNWPIYQLDVVVAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLNESLKVFGWKRTQYDPCVYMYTSGNIIVILTVYVDDILITGG-DQQLVDQKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEYYVNTLLERFGMQEANPVSTLGYGAEISTNQPQD-QILGPTDKKIYQSMTRSILYLAQCTRFDLSYAALQLSKACSNPAQVNLTAAKHVLRYLRGNPVLPIVYKRGQFWLAASTDSSFGANLDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSFSAREAIYISNFMTEFNFKTFGWVPINSDSTGALTVAGN 531 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17699.4218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17699.4218.1 >prot_H-paniculata_contig17699.4218.1 ID=prot_H-paniculata_contig17699.4218.1|Name=mRNA_H-paniculata_contig17699.4218.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=368bp MSLKKSVYGLRQSPNVWNHTIDNELRSMGFAPTVSDPCVYSKGSNDTYIMback to top mRNA from alignment at H-paniculata_contig17699:4079..5431- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17699.4218.1 ID=mRNA_H-paniculata_contig17699.4218.1|Name=mRNA_H-paniculata_contig17699.4218.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1353bp|location=Sequence derived from alignment at H-paniculata_contig17699:4079..5431- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17699:4079..5431- >mRNA_H-paniculata_contig17699.4218.1 ID=mRNA_H-paniculata_contig17699.4218.1|Name=mRNA_H-paniculata_contig17699.4218.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2208bp|location=Sequence derived from alignment at H-paniculata_contig17699:4079..5431- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |