mRNA_H-paniculata_contig17688.4215.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17688.4215.1
Unique NamemRNA_H-paniculata_contig17688.4215.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17688.4215.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.290e-7
Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 3
Query:   15 VSTMMLYKRKTGEDGKVEKYKCRLVANGNRQIKSIDFQEGSFPTPAAASTKIMLSV 182
            VS+   +  KT +DGK+EK+K RLVA G  QI ++D+   S P P++AS K+ML+V
Sbjct:   45 VSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAV 100          
BLAST of mRNA_H-paniculata_contig17688.4215.1 vs. uniprot
Match: A0A6H5JSU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSU1_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.300e-7
Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 3
Query:   15 VSTMMLYKRKTGEDGKVEKYKCRLVANGNRQIKSIDFQEGSFPTPAAASTKIMLSV 182
            VS+   +  KT +DGK+EK+K RLVA G  QI ++D+   S P P++AS K+ML+V
Sbjct:  352 VSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAV 407          
BLAST of mRNA_H-paniculata_contig17688.4215.1 vs. uniprot
Match: A0A6H5LGF7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGF7_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.320e-7
Identity = 27/56 (48.21%), Postives = 39/56 (69.64%), Query Frame = 3
Query:   15 VSTMMLYKRKTGEDGKVEKYKCRLVANGNRQIKSIDFQEGSFPTPAAASTKIMLSV 182
            VS+   +  KT +DGK+EK+K RLVA G  QI ++D+   S P P++AS K+ML+V
Sbjct: 1434 VSSKWRFTWKTNKDGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAV 1489          
BLAST of mRNA_H-paniculata_contig17688.4215.1 vs. uniprot
Match: A0A6H5K164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K164_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.770e-7
Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 3
Query:    9 LVVSTMMLYKRKTGEDGKVEKYKCRLVANGNRQIKSIDFQEGSFPTPAAASTKIMLSV 182
            L VS+   Y  KT ++GKV+K+K RL+A G  QI ++D+   S P P++AS K+ML+V
Sbjct:  342 LPVSSKWCYSWKTNKEGKVDKFKARLLARGFSQIPNVDYFHSSSPCPSSASIKLMLAV 399          
BLAST of mRNA_H-paniculata_contig17688.4215.1 vs. uniprot
Match: A0A6H5KUV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUV5_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 1.790e-7
Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 3
Query:   15 VSTMMLYKRKTGEDGKVEKYKCRLVANGNRQIKSIDFQEGSFPTPAAASTKIMLSV 182
            VS    +  KT ++GK++K+K RLVA G  QI ++D+   S P P++ASTK+ML+V
Sbjct:  741 VSPKWCFSWKTNKEGKIDKFKARLVARGFSQIPNVDYFHSSSPCPSSASTKLMLAV 796          
BLAST of mRNA_H-paniculata_contig17688.4215.1 vs. uniprot
Match: A0A6H5KFJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ3_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 4.170e-7
Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 3
Query:   15 VSTMMLYKRKTGEDGKVEKYKCRLVANGNRQIKSIDFQEGSFPTPAAASTKIMLSV 182
            VS+   +  KT +DGK+EK+K RLVA G  +I ++D+   S P P++AS K+ML+V
Sbjct:  163 VSSKWRFTWKTNKDGKIEKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAV 218          
BLAST of mRNA_H-paniculata_contig17688.4215.1 vs. uniprot
Match: A0A6H5KU29_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU29_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 4.490e-7
Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 3
Query:   15 VSTMMLYKRKTGEDGKVEKYKCRLVANGNRQIKSIDFQEGSFPTPAAASTKIMLSV 182
            VS+   +  KT ++GK+EK+K RLVA G  QI ++D+   S P P++AS K+ML+V
Sbjct:  163 VSSKCRFTWKTNKEGKIEKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAV 218          
BLAST of mRNA_H-paniculata_contig17688.4215.1 vs. uniprot
Match: A0A6H5KVP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVP5_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.570e-6
Identity = 25/56 (44.64%), Postives = 39/56 (69.64%), Query Frame = 3
Query:   15 VSTMMLYKRKTGEDGKVEKYKCRLVANGNRQIKSIDFQEGSFPTPAAASTKIMLSV 182
            VS+   +  KT ++GK++K+K RLVA G  QI ++D+   S P P++AS K+ML+V
Sbjct:  123 VSSKWCFCWKTNKEGKIDKFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAV 178          
BLAST of mRNA_H-paniculata_contig17688.4215.1 vs. uniprot
Match: UPI00090104FD (uncharacterized protein LOC104779870 isoform X1 n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI00090104FD)

HSP 1 Score: 52.4 bits (124), Expect = 2.950e-6
Identity = 25/65 (38.46%), Postives = 37/65 (56.92%), Query Frame = 3
Query:    3 NTLVVSTMMLYKRKTGEDGKVEKYKCRLVANGNRQIKSIDFQEGSFPTPAAASTKIMLSVVAIQD 197
            NT ++ +M LYK K   +G++ +YK RLVANGN Q+  +D  E   P    A+ + +L V    D
Sbjct:  445 NTNIIRSMWLYKHKFDSNGRLSRYKARLVANGNSQLPGVDCDETFSPVVKPATIRAVLHVATAYD 509          
BLAST of mRNA_H-paniculata_contig17688.4215.1 vs. uniprot
Match: T1IMU7_STRMM (Integrase catalytic domain-containing protein n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1IMU7_STRMM)

HSP 1 Score: 52.4 bits (124), Expect = 2.960e-6
Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 3
Query:   12 VVSTMMLYKRKTGEDGKVEKYKCRLVANGNRQIKSIDFQEGSFPTPAAASTKIMLSVVAI 191
            V+    +YKRKT   G + KYK RLVA G +QIK ID++E   P     + +++L++ AI
Sbjct:  500 VIGCKWIYKRKTDPAGHIIKYKARLVAQGFKQIKGIDYEESYSPVVRLTTIRVILALAAI 559          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17688.4215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCG0_9PHAE1.290e-748.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JSU1_9PHAE1.300e-748.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LGF7_9PHAE1.320e-748.21Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K164_9PHAE1.770e-746.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUV5_9PHAE1.790e-746.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFJ3_9PHAE4.170e-746.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KU29_9PHAE4.490e-746.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KVP5_9PHAE1.570e-644.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00090104FD2.950e-638.46uncharacterized protein LOC104779870 isoform X1 n=... [more]
T1IMU7_STRMM2.960e-641.67Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17688contigH-paniculata_contig17688:2590..2786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size197
Cds size174
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929382.3795297-UTR-H-paniculata_contig17688:2589..26121622929382.3795297-UTR-H-paniculata_contig17688:2589..2612Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17688 2590..2612 +
1691480839.1424463-UTR-H-paniculata_contig17688:2589..26121691480839.1424463-UTR-H-paniculata_contig17688:2589..2612Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17688 2590..2612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929382.3947163-CDS-H-paniculata_contig17688:2612..27861622929382.3947163-CDS-H-paniculata_contig17688:2612..2786Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17688 2613..2786 +
1691480839.1507447-CDS-H-paniculata_contig17688:2612..27861691480839.1507447-CDS-H-paniculata_contig17688:2612..2786Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17688 2613..2786 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17688.4215.1prot_H-paniculata_contig17688.4215.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17688 2613..2786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17688.4215.1

>prot_H-paniculata_contig17688.4215.1 ID=prot_H-paniculata_contig17688.4215.1|Name=mRNA_H-paniculata_contig17688.4215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
MMLYKRKTGEDGKVEKYKCRLVANGNRQIKSIDFQEGSFPTPAAASTKIM
LSVVAIQD
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mRNA from alignment at H-paniculata_contig17688:2590..2786+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17688.4215.1 ID=mRNA_H-paniculata_contig17688.4215.1|Name=mRNA_H-paniculata_contig17688.4215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=197bp|location=Sequence derived from alignment at H-paniculata_contig17688:2590..2786+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAACACGCTGGTCGTGAGCACGATGATGCTCTATAAAAGAAAAACCGGT GAGGACGGCAAAGTAGAGAAATACAAGTGCCGCCTGGTCGCCAACGGAAA CCGTCAGATCAAGAGCATCGACTTCCAGGAAGGTTCGTTCCCTACACCCG CAGCGGCTAGCACAAAAATAATGTTATCAGTTGTGGCAATCCAGGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig17688:2590..2786+

>mRNA_H-paniculata_contig17688.4215.1 ID=mRNA_H-paniculata_contig17688.4215.1|Name=mRNA_H-paniculata_contig17688.4215.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig17688:2590..2786+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGCTCTATAAAAGAAAAACCGGTGAGGACGGCAAAGTAGAGAAATA
CAAGTGCCGCCTGGTCGCCAACGGAAACCGTCAGATCAAGAGCATCGACT
TCCAGGAAGGTTCGTTCCCTACACCCGCAGCGGCTAGCACAAAAATAATG
TTATCAGTTGTGGCAATCCAGGACATGATGCTCTATAAAAGAAAAACCGG
TGAGGACGGCAAAGTAGAGAAATACAAGTGCCGCCTGGTCGCCAACGGAA
ACCGTCAGATCAAGAGCATCGACTTCCAGGAAGGTTCGTTCCCTACACCC
GCAGCGGCTAGCACAAAAATAATGTTATCAGTTGTGGCAATCCAGGAC
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