prot_H-paniculata_contig17688.4214.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig17688.4214.1
Unique Nameprot_H-paniculata_contig17688.4214.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length179
Homology
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 6.470e-21
Identity = 54/132 (40.91%), Postives = 79/132 (59.85%), Query Frame = 0
Query:   39 VMDMHRLLAHASQQITRDTVETAGVVLTGEWGACKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEYVTPKGLK--IDAIRMDNG 168
            V D H +  HA + + R T +  G+ LTG+  AC GCS GKA R A+   T   +     R++V+LGG  GVAS+GG  Y MIL DD++R   + F++ +SDA +A +S++A  V   G+   I+ +R DNG
Sbjct:  393 VNDFHNIYGHAHEGMLRTTAKRLGIELTGKMHACSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLAN-VRADGIPSLIEIVRSDNG 523          
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A1Y1LP39_PHOPY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LP39_PHOPY)

HSP 1 Score: 87.0 bits (214), Expect = 1.150e-16
Identity = 51/134 (38.06%), Postives = 69/134 (51.49%), Query Frame = 0
Query:   39 VMDMHRLLAHAS-QQITRDTVETAGVVLTGEWGACKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEYVTPKGLKIDAIRMDNGWVY 171
            +M  HR LAH S   + R      G+  +G   AC  C  GK HR    +K   RAT   E L+ DL GPM V S+GG+ YV+ L+DDY+R+  V F+K +++    L  +        G +I AIR D G  Y
Sbjct:   90 IMLWHRRLAHLSCGGLDRLRNMVQGLEYSGTMEACVSCIKGKQHRLPFPQKKVHRATEVLELLHSDLCGPMNVPSIGGARYVLTLIDDYTRMTFVSFLKTKNEVFTKLSEFRTYIENQTGKRIKAIRSDRGGEY 223          
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A0J7K9E1_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K9E1_LASNI)

HSP 1 Score: 81.6 bits (200), Expect = 8.760e-15
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 0
Query:   72 CKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEYVTPKGLKIDAIRMDNGWVY 171
            C GC  GK+ +    +   +++    E ++ DL GPM V S+GGS Y+M L+DDYSR   V F+K + +A   ++++I++    KGLKI   R DNG  Y
Sbjct:  226 CHGCCIGKSTKVPCKRINGRQSRGILELIHSDLCGPMSVKSIGGSRYIMTLIDDYSRKTMVYFLKSKDEAVHNIKNFISKVERDKGLKIKRFRSDNGLEY 325          
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A6H5KVT7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT7_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.200e-14
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 0
Query:   56 DTVETAGVVLTGEWGACKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEYVTPKGLK--IDAIRMDNG 168
            D     G+ LTG+  A  GCS GK  R A+   T   +     R++VDLGG  GVAS+GG  Y MIL DD++R   + F++ +SDA +  +S++A  V   G+   I+ +R DNG
Sbjct:  238 DWYADTGIELTGKMHAYSGCSMGKGIRKAIAHVTTNGSDKKLGRVFVDLGGKKGVASIGGKHYPMILKDDFTRRARMYFLRSKSDAGSVFRSFLAN-VRADGIPSLIEIVRSDNG 351          
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER)

HSP 1 Score: 77.0 bits (188), Expect = 3.680e-13
Identity = 44/140 (31.43%), Postives = 71/140 (50.71%), Query Frame = 0
Query:   43 HRLLAHASQQ----ITRDTVETAGVVLTGEWGACKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEYVTPKGLKIDAIRMDNGWVYSARKRSH 178
            HR + H +++    ++R   +     L  E   C  C TGK  R       +++++   + ++VDL GP+ V SLGGS Y++ +VDD+SR   V F+K + +A   L  YI +     G K+  +R DNG  +  R   H
Sbjct:  428 HRRMGHLNRETLVRMSRTEADRGMPKLKQEDFECVPCITGKHSRNPFNPSQERQSSSLLDLVHVDLCGPLPVCSLGGSRYILAVVDDHSRRITVRFLKSKDEAAEILTEYINQVERQTGSKVKRVRTDNGTEFVNRGLQH 567          
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A5E4G7P4_PRUDU (PREDICTED: Retrovirus-related Pol poly from transposon n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4G7P4_PRUDU)

HSP 1 Score: 76.6 bits (187), Expect = 4.800e-13
Identity = 39/104 (37.50%), Postives = 58/104 (55.77%), Query Frame = 0
Query:   70 GACKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEYVTPKGLKIDAIRMDNGWVYSA 173
            G C+GC  GK HR    +   +RAT   E ++VDL GPM   S+ G+ Y M+L+DD+SR+  V F++ +SDA    + + A      G KI  +R D G  + +
Sbjct:  520 GVCEGCQFGKQHREEFPRNQAQRATAPLELVHVDLCGPMRNDSIAGNKYFMLLIDDFSRMIWVYFLRYKSDAFNCFRKFKAMTELQSGFKIKCLRSDRGGEFKS 623          
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A5H2Y546_PRUDU (Uncharacterized protein n=4 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2Y546_PRUDU)

HSP 1 Score: 76.6 bits (187), Expect = 5.030e-13
Identity = 39/104 (37.50%), Postives = 58/104 (55.77%), Query Frame = 0
Query:   70 GACKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEYVTPKGLKIDAIRMDNGWVYSA 173
            G C+GC  GK HR    +   +RAT   E ++VDL GPM   S+ G+ Y M+L+DD+SR+  V F++ +SDA    + + A      G KI  +R D G  + +
Sbjct:  520 GVCEGCQFGKQHREEFPRNQAQRATAPLELVHVDLCGPMRNDSIAGNKYFMLLIDDFSRMIWVYFLRYKSDAFNCFRKFKAMTELQSGFKIKCLRSDRGGEFKS 623          
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A6H5KU45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU45_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 3.270e-12
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = 0
Query:   48 HASQQITRDTVETAGVVLTG-EWGACKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEY 152
            HA +++ RDT +  GV LTG     C  CS  K     V   T  RA     R+++DLGG M +AS+GGS + + +V D++R   V F+K++SDA    + ++A+Y
Sbjct: 1262 HAHEKLLRDTAKQQGVQLTGGPLLPCLSCSISKGQVKPVGTSTSTRAVKKLVRIFLDLGGKMKIASIGGSLFTLKIVCDHTRWTRVFFLKRKSDAAEKFKHFLADY 1367          
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A836F4N7_9HYME (POLX protein (Fragment) n=1 Tax=Pseudoatta argentina TaxID=621737 RepID=A0A836F4N7_9HYME)

HSP 1 Score: 73.9 bits (180), Expect = 3.930e-12
Identity = 42/144 (29.17%), Postives = 72/144 (50.00%), Query Frame = 0
Query:   29 KAENEANTLAVMDMHRLLAHASQQITRDTVETAGVVLTGEW----GACKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEYVTPKGLKIDAIRMDNG 168
            K E  A T  +   H+   H +++I  +  +   V+   E       C+ C  GK  R A  + T ++     E  ++DL GP+  +S GG  Y+  ++DDYSR+  ++F+K++ +A+  L+  I       G+K+  IR DNG
Sbjct:  278 KNEQAARTSEIDIWHKRFGHTNKKINEEMKKEDLVIGLKETDKMISQCESCVEGKMCRKAHPRLTHRKTKKIMELWHIDLVGPINPSSYGGKRYIFTIIDDYSRVIFIDFLKEKKEASEKLKKLILLKENQTGMKLKGIRSDNG 421          
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A4Y1RL02_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RL02_PRUDU)

HSP 1 Score: 73.6 bits (179), Expect = 5.330e-12
Identity = 38/104 (36.54%), Postives = 58/104 (55.77%), Query Frame = 0
Query:   70 GACKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEYVTPKGLKIDAIRMDNGWVYSA 173
            G C GC  GK HR    K    RA+   E ++VDL GPM   S+ G+ YVM+L+DD +R+  V F++ +SDA    + + +      GLK+  +R D G  +++
Sbjct:   93 GVCDGCQFGKQHREWFPKNQAWRASNPLELVHVDLCGPMQNESIAGNKYVMLLIDDCTRMVWVYFLRYKSDALNCFRKFKSMVELQSGLKVKCLRSDKGGEFTS 196          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH25_9PHAE6.470e-2140.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y1LP39_PHOPY1.150e-1638.06Integrase catalytic domain-containing protein (Fra... [more]
A0A0J7K9E1_LASNI8.760e-1539.00Retrovirus-related pol polyprotein from transposon... [more]
A0A6H5KVT7_9PHAE1.200e-1440.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A293MM55_ORNER3.680e-1331.43Reverse transcriptase, gag, polyprotein (Fragment)... [more]
A0A5E4G7P4_PRUDU4.800e-1337.50PREDICTED: Retrovirus-related Pol poly from transp... [more]
A0A5H2Y546_PRUDU5.030e-1337.50Uncharacterized protein n=4 Tax=Prunus dulcis TaxI... [more]
A0A6H5KU45_9PHAE3.270e-1237.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836F4N7_9HYME3.930e-1229.17POLX protein (Fragment) n=1 Tax=Pseudoatta argenti... [more]
A0A4Y1RL02_PRUDU5.330e-1236.54Transposable element protein n=1 Tax=Prunus dulcis... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 97..174
e-value: 4.0E-8
score: 33.4
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 92..178
score: 9.034
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 86..175
e-value: 1.6E-5
score: 26.2
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 92..173

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17688contigH-paniculata_contig17688:1149..1685 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17688.4214.1mRNA_H-paniculata_contig17688.4214.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig17688 1005..1690 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig17688.4214.1 ID=prot_H-paniculata_contig17688.4214.1|Name=mRNA_H-paniculata_contig17688.4214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=179bp
MIESSDDSPNRARIETIIANQYNRLQQQKAENEANTLAVMDMHRLLAHAS
QQITRDTVETAGVVLTGEWGACKGCSTGKAHRFAVLKKTDKRATWAAERL
YVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIA
EYVTPKGLKIDAIRMDNGWVYSARKRSH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001584Integrase_cat-core
IPR036397RNaseH_sf
IPR012337RNaseH-like_sf