mRNA_H-paniculata_contig1768.4213.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1768.4213.1 vs. uniprot
Match: D7G3Y1_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Y1_ECTSI) HSP 1 Score: 383 bits (984), Expect = 4.560e-113 Identity = 326/654 (49.85%), Postives = 394/654 (60.24%), Query Frame = 1
Query: 1 DDMELESLEHFDGDVRRVLNAVQMSVVCRGPKEAAQFCRELKAHPQVKAVMWNGIGPEASSEGSRQAFQAGNAFVHLKGSDHVVQIQLRREMFLGTAGVDYKSLEWARGLKAPVMTGAEPCLRFDGLRMPVKERMLALVRQDWMGLRCMLPQLLEAMGKAEEAENLLRQTDAEERALRHLAESHDEDKSGDDETAEATATAASACAMSDLAMVLQEQGKLTEAEELFRKALAMRIEVLGPDHPCVGLSASNLAGVLRDQGRREEATAELLSTMKLPFPPTPVSSHRFLPTPPRXXXXXXXXXXXXPNASQAAAAALGSEREESIPGRPTMYPPVPSPPLADFMVDDRADPKTL-MESPETIGERYASSHSLKDLAATAVVGGTLDATADALSSTGAAVAAAVTAISAGENAKTARFALA----------------------SARASAHAVMEPRVIVSEARRENEKQREYEARASIEQDAVDVEWELAHSVAVANLNNLAVLLSEQGDAEQAEAFHRRALRAREMVHGPNHPDVPILLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATSLEFLTRMALRRGRTFVEMEELVSRLVDAREACLTKNNAPPAIEGRRQVGSVMSDLALALRRQPKEQAKRAFPLFR 1893
+D+E E+ + GDVRRVLN V++ VV RG KEAA+FCR+LK H QVKAVMW + + S F A V L+ S+HVV ++L+ E F TAG+DYK+LEWAR LK PV T PC+RFD +R PV++RM+AL RQDWMGLR +LPQLL A G +EAE LLRQ +EE+A+R LA + + GD A + A A A S+LA +L EQGKL EAEEL+R AL MR LG +HP VGLSAS +M + P + XXXXXXXXXX P + ++ S R T PPV +PP+ D ++DD+A PK ++S G S + V GG A D + +S V+E + E R + +++ E R S E+ D WELAHSVAVA+LNNLAVLLSEQGDAEQAEAFHRRALRARE+VHGP+HPDVP+LLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EFL RMAL+ G+T+ EME LV RL +AREA LT +NAPPAIEGRRQVGSVMSDLALALR+Q +EQA RAFPLFR
Sbjct: 1846 EDIEEEAKRYHQGDVRRVLNVVKLVVVSRGAKEAAEFCRKLKYHTQVKAVMWERLPQSPVVKTSNIGFTGIKASVELEASNHVVAVELQSEKFHSTAGMDYKALEWARALKVPVSTSG-PCVRFDEIRPPVQQRMVALARQDWMGLRRVLPQLLRATGNVDEAERLLRQNASEEKAVRVLAGRAGDGEDGD--LARTQSAVALASARSELAGLLHEQGKLLEAEELYRSALDMRTAALGVEHPSVGLSASXXXXXXXXXXXXXXXXXXXXXSMNITASPPSLPQQXXX----XXXXXXXXXXXPAPGRGDTVGIMVTTKATSS---RATPNPPVATPPVGDLLLDDKAAPKNSPLDSLVPAGCSPFGSSGV-------VGGGDARAVDDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPTGNSSGLLVVEQEL---EIRGQQQREAEESPRTSEEKSGRD--WELAHSVAVASLNNLAVLLSEQGDAEQAEAFHRRALRAREVVHGPDHPDVPLLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFLARMALQSGKTYTEMEGLVIRLANAREARLTVSNAPPAIEGRRQVGSVMSDLALALRQQKQEQATRAFPLFR 2477
BLAST of mRNA_H-paniculata_contig1768.4213.1 vs. uniprot
Match: A0A6H5KHL0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHL0_9PHAE) HSP 1 Score: 333 bits (854), Expect = 8.430e-96 Identity = 290/632 (45.89%), Postives = 346/632 (54.75%), Query Frame = 1
Query: 7 MELESLEHFDGDVRRVLNAVQMSVVCRGPKEAAQFCRELKAHPQVKAVMWNGIGPEASSEGSRQAFQAGNAFVHLKGSDHVVQIQLRREMFLGTAGVDYKSLEWARGLKAPVMTGAEPCLRFDGLRMPVKERMLALVRQDWMGLRCMLPQLLEAMGKAEEAENLLRQTDAEERALRHLAESHDEDKSGDDETAEATAT---AASACAMSDLAMVLQEQGKLTEAEELFRKALAMRIEVLGPDHPCVGLSASNLAGVLRDQGRREEATAELLSTMKLPFPPTPVSSHRFLPTPPRXXXXXXXXXXXXPNASQAAAAALGSEREESIPGRPTMYPPVPSPPLADFMVDDRADPKTLMESPETIGERYASSHSLKDLAATAVVGGTLDATADALSSTGAAVAAAVTAISAGENAKTARFALASARASAHAVMEPRVIVSEARRENEKQREYEARASIEQDAVDVEWELAHSVAVANLNNLAVLLSEQGDAEQAEAFHRRALRAREMVHGPNHPDVPILLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATSLEFLTRMALRRGRTFVEMEELVSRLVDAREACLTKNNAPPAIEGRRQVGSVMSDLALALRRQPKEQAKRAFPLFR 1893
+E E+ + GDVRRVLN V++ VVCRG KEAA+FCR+LK H QVKAVMW + + S F A V L+ S HVV+++L+ E F TAG+DYK+LEWAR LK PV T ++PC+RFD +R PV++RM+AL RQDWMGLR +LPQLL A G +EAE LLRQ +EE+A+R +A ++GD E E T A A A S+LA +L EQGKL EAEEL+R A+ + P+H + A LLS L E EES T GG L V+E + + + RAS E+ D +WELAHSVAVA+LNNLAVLLSEQGDAEQAEAFHRRALRARE+VHGP+HPDVP+LLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EFL RMAL+ G+T+ EME LV RL +AREA LT +NAPPAIEGRRQVGSVMS+LALALR+Q +EQA RAFPLFR
Sbjct: 2458 IEEEAKRYHQGDVRRVLNVVKLVVVCRGAKEAAEFCRKLKCHTQVKAVMWERLPQSPIMKTSNFGFTGIKASVELEASKHVVEVELQSEKFHNTAGMDYKALEWARALKVPVST-SDPCVRFDEIRPPVQQRMVALARQDWMGLRRVLPQLLRATGNVDEAERLLRQNASEEKAVRVIA-----GRAGDGEDGELARTQSAVALASARSELAGLLHEQGKLLEAEELYRHAMTV------PEHS------------------QRPFDAVLLSF-------------------------------------------LDDEDEESNXXXXXXXXX-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPPTGNSGGLL-------------------------------------------VVEQELEIKG--QXXXXXXXXXXRASEEKSGRDRDWELAHSVAVASLNNLAVLLSEQGDAEQAEAFHRRALRARELVHGPDHPDVPLLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFLARMALQSGKTYTEMEGLVIRLANAREARLTVSNAPPAIEGRRQVGSVMSELALALRQQKQEQATRAFPLFR 2966
BLAST of mRNA_H-paniculata_contig1768.4213.1 vs. uniprot
Match: A0A6H5KEH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH7_9PHAE) HSP 1 Score: 171 bits (432), Expect = 1.120e-44 Identity = 142/182 (78.02%), Postives = 155/182 (85.16%), Query Frame = 1
Query: 1348 RASIEQDAVDVEWELAHSVAVANLNNLAVLLSEQGDAEQAEAFHRRALRAREMVHGPNHPDVPILLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATSLEFLTRMALRRGRTFVEMEELVSRLVDAREACLTKNNAPPAIEGRRQVGSVMSDLALALRRQPKEQAKRAFPLFR 1893
RAS E+ D WELAHSVAVA+LNN+AVLLSEQGDAEQAEAFHRRALRARE+VHGP+HPDVP+LL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX FL RMAL+ G+T+ EME LV RL +AREA LT +APPAIE VGSVMSDLALALR+Q +EQA RAFPLFR
Sbjct: 75 RASEEKSGRD--WELAHSVAVASLNNVAVLLSEQGDAEQAEAFHRRALRARELVHGPDHPDVPLLLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFLARMALQSGKTYTEMEGLVIRLANAREARLTGCDAPPAIE----VGSVMSDLALALRQQKQEQATRAFPLFR 250 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1768.4213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1768.4213.1 >prot_H-paniculata_contig1768.4213.1 ID=prot_H-paniculata_contig1768.4213.1|Name=mRNA_H-paniculata_contig1768.4213.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=629bp MELESLEHFDGDVRRVLNAVQMSVVCRGPKEAAQFCRELKAHPQVKAVMWback to top mRNA from alignment at H-paniculata_contig1768:8019..23815- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1768.4213.1 ID=mRNA_H-paniculata_contig1768.4213.1|Name=mRNA_H-paniculata_contig1768.4213.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=15797bp|location=Sequence derived from alignment at H-paniculata_contig1768:8019..23815- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1768:8019..23815- >mRNA_H-paniculata_contig1768.4213.1 ID=mRNA_H-paniculata_contig1768.4213.1|Name=mRNA_H-paniculata_contig1768.4213.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3774bp|location=Sequence derived from alignment at H-paniculata_contig1768:8019..23815- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |