mRNA_H-paniculata_contig17678.4211.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17678.4211.1
Unique NamemRNA_H-paniculata_contig17678.4211.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17678.4211.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 8.770e-22
Identity = 57/143 (39.86%), Postives = 77/143 (53.85%), Query Frame = 1
Query:    7 CLDAFTVVLEQTCGGQRSFMSTKDLQLASLQFCVACRKFKTLHVRVKDRTPRALWAPAAPPIPEPIHNTRRSKKPTRVPLLRPRTVTW-LIPLEMLSRCVDRLTGVECFIVGGGLDRYVEAVQWPASLR--ELTFGDACNQPI 426
            CL +  V L +TC G   + STK+LQ ASL+FC+ACR +  +H++V  + PR L A A  P P P          TRVP LR R+VTW +     L   +  +T V+C   GG  D  +EAV WP  L+  E  +    NQP+
Sbjct:   14 CLSSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHPKRLCW-----TRVPRLRARSVTWNMRAAAELGNPIFAITDVDCLEFGGTFDGSLEAVTWPRRLKMIEFLYTSPFNQPL 151          
BLAST of mRNA_H-paniculata_contig17678.4211.1 vs. uniprot
Match: A0A6H5JFC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC0_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 7.420e-21
Identity = 56/144 (38.89%), Postives = 80/144 (55.56%), Query Frame = 1
Query:    4 RCLDAFTVVLEQTCGGQRSFMSTKDLQLASLQFCVACRKFKTLHVRVKDRTPRALWA--PAAPPIPEPIHNTRRSKKPTRVPLLRPRTVTWLIPLEMLSRCVD-RLTGVECFIVGGGLDRYVEAVQWPASLRELTFGDACNQPI 426
            RCLDAF V L Q C G   ++ST+ LQL+SL FCVACR   T+H++V   TP  L++    A  + +  H + +     RVP LR R VTW +  E   RC    L+ VE F++G  ++  ++   W   +R L+ G   +QPI
Sbjct:   29 RCLDAFKVALNQACDGGGWYVSTEQLQLSSLPFCVACRSVPTMHLKVDRSTPARLFSGDDDAAAVRDKGHGSSKRVMAARVPALRARKVTWQLSGET-PRCTGVGLSSVELFVLGDAVNDSMDEAVWSDGMRSLSLGQMFDQPI 171          
BLAST of mRNA_H-paniculata_contig17678.4211.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.760e-20
Identity = 62/165 (37.58%), Postives = 81/165 (49.09%), Query Frame = 1
Query:    7 CLDAFTVVLEQTCGGQRSFMSTKDLQLASLQFCVACRKFKTLHVRVKDRTPRALWAPAAPPIPEPIHNTRRSKKPTRVPLLRPRTVTWLIPLEMLSRC-VDRLTGVECFIVGGGL------------------------DRYVEAVQWPASLRELTFGDACNQPI 426
            CL+A  V L +TC G+  + STK+LQLASL FC+ACR  +T+H+ V ++ PR L A A  P P P          TRVP LR R VTW +P     R  +  +T +E    G                           D+ +E VQWP  L+ +TFG   NQPI
Sbjct:   51 CLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRLCW-----TRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTMEFHHDSPFDQTIELVQWPPFLQNVTFGGDFNQPI 210          
BLAST of mRNA_H-paniculata_contig17678.4211.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 6.450e-20
Identity = 65/166 (39.16%), Postives = 82/166 (49.40%), Query Frame = 1
Query:    7 CLDAFTVVLEQTCGGQRSFMSTKDLQLASLQFCVACRKFKTLHVRVKDRTPRALWAPAAPPIPEPIHNTRRSKKPTRVPLLRPRTVTWLIPLEMLSRC-------VD-------------------RLTGVECFIVGGGLDRYVEAVQWPASLRELTFGDACNQPI 426
            CL   TV L +TC G+  + STK+LQLASL+ C+ACR ++TLH+ V   TPR L A A  P P P     +    TRVP LR R  TW +P     R        VD                   RL  +E F     L+R ++ V WPASLR++  G   NQPI
Sbjct:  136 CLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHP-----KRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIE-FRQSSPLNRLLDGVSWPASLRKVCLGHDFNQPI 295          
BLAST of mRNA_H-paniculata_contig17678.4211.1 vs. uniprot
Match: D7FXS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 6.860e-20
Identity = 59/138 (42.75%), Postives = 75/138 (54.35%), Query Frame = 1
Query:    4 RCLDAFTVVLEQTCGGQRSFMSTKDLQLASLQFCVACRKFKTLHVRVKD-RTPRALWAPAAPPIPEPIHNTRRSKKP--TRVPLLRPRTVTWLIPLEMLSRCVDRLTGVECFIVGGGLDRYVEAVQWPASLRELTFGD 408
            RCL+AF V L  +C G   + STK+LQLASLQFCV CRK  +LH+ V +   P  LW   A            +K+P  T VP+ RPR VTW  P  +LS        VE F+V    D  V+ V WP  L++L FG+
Sbjct:    6 RCLEAFAVALNTSCDGNVWYTSTKELQLASLQFCVKCRKVPSLHLAVNNAHVPARLWNDHAA-----TEARTGAKRPSTTPVPVFRPREVTWGRPAWLLSDICLVFAKVERFLVRQ--DTVVDDVVWPCRLKKLFFGE 136          
BLAST of mRNA_H-paniculata_contig17678.4211.1 vs. uniprot
Match: A0A6H5JRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 8.650e-18
Identity = 53/127 (41.73%), Postives = 73/127 (57.48%), Query Frame = 1
Query:   25 VVLEQTCGGQRSFMSTKDLQLASLQFCVACRKFKTLHVRVKDRTPRALWAPAAPPIPEPIHNTRRSKKPTRVPLLRPRTVTWLIPLEM-LSRCVDRLTGVECFIVGGGLDRYVEAVQWPASLRELTF 402
            + L + C G+R + STK+LQLASL+FC+ACRK++ L ++V  +TPR L A    P   P H  R  +  TRVP LR R V W +P    L   +  L  V C   GG  +  +EAV WP  L+++ F
Sbjct:   23 LALNEMCDGKRWYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNLLAAVDAP---PPHTKRPCR--TRVPRLRARRVKWNMPTATELRTLMFALKDVNCLRFGGVFNGSLEAVVWPPPLKQIIF 144          
BLAST of mRNA_H-paniculata_contig17678.4211.1 vs. uniprot
Match: A0A6H5JYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 1.080e-17
Identity = 57/133 (42.86%), Postives = 74/133 (55.64%), Query Frame = 1
Query:   43 CGGQRSFMSTKDLQLASLQFCVACRKFKTLHVRVKDRTPRALWAPAAPPIPEPIHNTRRSKKP--TRVPLLRPRTVTWLIPLEM-LSRCVDRLTGVECFIVGGGLDRYVEAVQWPASLRELTF--GDACNQPI 426
            C G+R + STK+LQ ASL+FC+ACRK++TL +RV  +TPR L A    P P        SK+P  TRVP LR R V W +P    L   +  L  V     G   +  +E+V WP  L+E+ F  G   NQPI
Sbjct:    2 CDGKRWYTSTKELQQASLEFCIACRKYQTLRLRVDVQTPRTLLAAVDAPSPH-------SKRPCRTRVPRLRARRVIWNMPTATELKSPIFALKDVVRLDFGPAFEGSLESVAWPQRLKEIDFSWGSLFNQPI 127          
BLAST of mRNA_H-paniculata_contig17678.4211.1 vs. uniprot
Match: A0A6H5K0U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U4_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.300e-17
Identity = 59/132 (44.70%), Postives = 72/132 (54.55%), Query Frame = 1
Query:    4 RCLDAFTVVLEQTCG--GQRS-FMSTKDLQLASLQFCVACRKFKTLHVRVKDRTPRALWAPAAPPIPEPIHNTRRSKKPTRVPLLRPRTVTW-LIPLEMLSRCVDRLTGVECFIVGGGLDRYVEAVQWPASL 387
            R LD   VVL Q CG  GQ+  F STK+LQLASLQ C ACR    LH+RV   TP  L APA  P       +  S++ TRVP LR R V+W L   + LS  +  L   + F     L+  ++AV WP SL
Sbjct:   28 RFLDVVIVVLNQACGDGGQKHWFASTKELQLASLQLCEACRDAAALHLRVNTSTPLRLLAPADSP-------SDGSEEGTRVPRLRAREVSWDLTSADRLSSSIYALASAQVFTFSDSLNAVLDAVVWPTSL 152          
BLAST of mRNA_H-paniculata_contig17678.4211.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 1.920e-17
Identity = 51/112 (45.54%), Postives = 67/112 (59.82%), Query Frame = 1
Query:    7 CLDAFTVVLEQTCGGQRSFMSTKDLQLASLQFCVACRKFKTLHVRVKDRTPRALWAPAAPPIPEPIHNTRRSKKPTRVPLLRPRTVTW-LIPLEMLSRCVDRLTGVECFIVG 339
            CL+A  + L +TC G+  + STK+LQLASL+FCVACR ++TLH++V  + PR L A A  P P P    R     TRVP LR R VTW +     LS  +  +T V+C   G
Sbjct:  113 CLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPELLCR-----TRVPRLRARRVTWGMRKAAELSIPIFAMTDVDCLKFG 219          
BLAST of mRNA_H-paniculata_contig17678.4211.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.420e-17
Identity = 56/133 (42.11%), Postives = 75/133 (56.39%), Query Frame = 1
Query:    7 CLDAFTVVLEQTCGGQRSFMSTKDLQLASLQFCVACRKFKTLHVRVKDRTPRALWAPAAPPIPEPIHNTRRSKKPTRVPLLRPRTVTWLIPLEMLSRC-VDRLTGVECFIVGGGLDRYVEAVQWPASLRELTF 402
            CL+A  V L +T  G+  + STK+LQLASL+FC+ACR ++TLH+ V  R PR L A A  P   P H  R S++  RVP LR R VTW +P     R  +  L  ++    G   +  +EAV WP  L  + F
Sbjct:   36 CLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGP---PQHPKRLSRR--RVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAFEGSLEAVTWPRRLESIAF 163          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17678.4211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7FH81_ECTSI8.770e-2239.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFC0_9PHAE7.420e-2138.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRF9_9PHAE2.760e-2037.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPY7_9PHAE6.450e-2039.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXS2_ECTSI6.860e-2042.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRK5_9PHAE8.650e-1841.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYF0_9PHAE1.080e-1742.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0U4_9PHAE1.300e-1744.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2S9_ECTSI1.920e-1745.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZZ4_9PHAE2.420e-1742.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17678contigH-paniculata_contig17678:2010..2546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size537
Cds size537
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929381.8726377-CDS-H-paniculata_contig17678:2009..25461622929381.8726377-CDS-H-paniculata_contig17678:2009..2546Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17678 2010..2546 -
1691480838.909473-CDS-H-paniculata_contig17678:2009..25461691480838.909473-CDS-H-paniculata_contig17678:2009..2546Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17678 2010..2546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17678.4211.1prot_H-paniculata_contig17678.4211.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17678 2010..2546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17678.4211.1

>prot_H-paniculata_contig17678.4211.1 ID=prot_H-paniculata_contig17678.4211.1|Name=mRNA_H-paniculata_contig17678.4211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=179bp
MRCLDAFTVVLEQTCGGQRSFMSTKDLQLASLQFCVACRKFKTLHVRVKD
RTPRALWAPAAPPIPEPIHNTRRSKKPTRVPLLRPRTVTWLIPLEMLSRC
VDRLTGVECFIVGGGLDRYVEAVQWPASLRELTFGDACNQPIDKVVWPAC
LHRLTFGAFFNQPIDRVAWPASLQQLSIG
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mRNA from alignment at H-paniculata_contig17678:2010..2546-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17678.4211.1 ID=mRNA_H-paniculata_contig17678.4211.1|Name=mRNA_H-paniculata_contig17678.4211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=537bp|location=Sequence derived from alignment at H-paniculata_contig17678:2010..2546- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGATGTTTAGACGCCTTCACTGTAGTCTTGGAGCAGACCTGCGGGGG CCAGCGATCGTTCATGTCCACGAAGGACCTGCAGCTGGCGTCGCTGCAAT TCTGCGTTGCGTGCCGAAAGTTCAAGACCCTACACGTTCGGGTGAAGGAT CGCACGCCGCGAGCCCTGTGGGCCCCCGCAGCCCCCCCGATCCCAGAGCC GATCCATAACACCCGGAGGTCGAAGAAGCCCACCCGCGTGCCGCTGTTAC GGCCGCGTACGGTGACCTGGCTGATTCCGCTTGAGATGTTGTCGAGGTGC GTGGATCGACTGACGGGGGTGGAGTGCTTCATCGTCGGGGGAGGTTTGGA CCGGTACGTAGAGGCAGTTCAGTGGCCGGCCTCTCTGCGCGAGCTGACGT TTGGCGATGCGTGCAACCAGCCCATCGACAAGGTGGTGTGGCCTGCGTGT CTGCATCGGCTCACTTTCGGTGCGTTTTTCAATCAGCCCATCGATAGGGT CGCGTGGCCGGCGTCGCTGCAGCAGCTATCGATTGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig17678:2010..2546-

>mRNA_H-paniculata_contig17678.4211.1 ID=mRNA_H-paniculata_contig17678.4211.1|Name=mRNA_H-paniculata_contig17678.4211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at H-paniculata_contig17678:2010..2546- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGATGTTTAGACGCCTTCACTGTAGTCTTGGAGCAGACCTGCGGGGG
CCAGCGATCGTTCATGTCCACGAAGGACCTGCAGCTGGCGTCGCTGCAAT
TCTGCGTTGCGTGCCGAAAGTTCAAGACCCTACACGTTCGGGTGAAGGAT
CGCACGCCGCGAGCCCTGTGGGCCCCCGCAGCCCCCCCGATCCCAGAGCC
GATCCATAACACCCGGAGGTCGAAGAAGCCCACCCGCGTGCCGCTGTTAC
GGCCGCGTACGGTGACCTGGCTGATTCCGCTTGAGATGTTGTCGAGGTGC
GTGGATCGACTGACGGGGGTGGAGTGCTTCATCGTCGGGGGAGGTTTGGA
CCGGTACGTAGAGGCAGTTCAGTGGCCGGCCTCTCTGCGCGAGCTGACGT
TTGGCGATGCGTGCAACCAGCCCATCGACAAGGTGGTGTGGCCTGCGTGT
CTGCATCGGCTCACTTTCGGTGCGTTTTTCAATCAGCCCATCGATAGGGT
CGCGTGGCCGGCGTCGCTGCAGCAGCTATCGATTGGAATGCGATGTTTAG
ACGCCTTCACTGTAGTCTTGGAGCAGACCTGCGGGGGCCAGCGATCGTTC
ATGTCCACGAAGGACCTGCAGCTGGCGTCGCTGCAATTCTGCGTTGCGTG
CCGAAAGTTCAAGACCCTACACGTTCGGGTGAAGGATCGCACGCCGCGAG
CCCTGTGGGCCCCCGCAGCCCCCCCGATCCCAGAGCCGATCCATAACACC
CGGAGGTCGAAGAAGCCCACCCGCGTGCCGCTGTTACGGCCGCGTACGGT
GACCTGGCTGATTCCGCTTGAGATGTTGTCGAGGTGCGTGGATCGACTGA
CGGGGGTGGAGTGCTTCATCGTCGGGGGAGGTTTGGACCGGTACGTAGAG
GCAGTTCAGTGGCCGGCCTCTCTGCGCGAGCTGACGTTTGGCGATGCGTG
CAACCAGCCCATCGACAAGGTGGTGTGGCCTGCGTGTCTGCATCGGCTCA
CTTTCGGTGCGTTTTTCAATCAGCCCATCGATAGGGTCGCGTGGCCGGCG
TCGCTGCAGCAGCTATCGATTGGA
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