mRNA_H-paniculata_contig17678.4211.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17678.4211.1 vs. uniprot
Match: D7FH81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH81_ECTSI) HSP 1 Score: 97.1 bits (240), Expect = 8.770e-22 Identity = 57/143 (39.86%), Postives = 77/143 (53.85%), Query Frame = 1
Query: 7 CLDAFTVVLEQTCGGQRSFMSTKDLQLASLQFCVACRKFKTLHVRVKDRTPRALWAPAAPPIPEPIHNTRRSKKPTRVPLLRPRTVTW-LIPLEMLSRCVDRLTGVECFIVGGGLDRYVEAVQWPASLR--ELTFGDACNQPI 426
CL + V L +TC G + STK+LQ ASL+FC+ACR + +H++V + PR L A A P P P TRVP LR R+VTW + L + +T V+C GG D +EAV WP L+ E + NQP+
Sbjct: 14 CLSSLIVALNETCDGTSWYTSTKELQRASLEFCIACRNYPIMHLKVDPQIPRNLLAAADAPPPHPKRLCW-----TRVPRLRARSVTWNMRAAAELGNPIFAITDVDCLEFGGTFDGSLEAVTWPRRLKMIEFLYTSPFNQPL 151
BLAST of mRNA_H-paniculata_contig17678.4211.1 vs. uniprot
Match: A0A6H5JFC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC0_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 7.420e-21 Identity = 56/144 (38.89%), Postives = 80/144 (55.56%), Query Frame = 1
Query: 4 RCLDAFTVVLEQTCGGQRSFMSTKDLQLASLQFCVACRKFKTLHVRVKDRTPRALWA--PAAPPIPEPIHNTRRSKKPTRVPLLRPRTVTWLIPLEMLSRCVD-RLTGVECFIVGGGLDRYVEAVQWPASLRELTFGDACNQPI 426
RCLDAF V L Q C G ++ST+ LQL+SL FCVACR T+H++V TP L++ A + + H + + RVP LR R VTW + E RC L+ VE F++G ++ ++ W +R L+ G +QPI
Sbjct: 29 RCLDAFKVALNQACDGGGWYVSTEQLQLSSLPFCVACRSVPTMHLKVDRSTPARLFSGDDDAAAVRDKGHGSSKRVMAARVPALRARKVTWQLSGET-PRCTGVGLSSVELFVLGDAVNDSMDEAVWSDGMRSLSLGQMFDQPI 171
BLAST of mRNA_H-paniculata_contig17678.4211.1 vs. uniprot
Match: A0A6H5JRF9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 2.760e-20 Identity = 62/165 (37.58%), Postives = 81/165 (49.09%), Query Frame = 1
Query: 7 CLDAFTVVLEQTCGGQRSFMSTKDLQLASLQFCVACRKFKTLHVRVKDRTPRALWAPAAPPIPEPIHNTRRSKKPTRVPLLRPRTVTWLIPLEMLSRC-VDRLTGVECFIVGGGL------------------------DRYVEAVQWPASLRELTFGDACNQPI 426
CL+A V L +TC G+ + STK+LQLASL FC+ACR +T+H+ V ++ PR L A A P P P TRVP LR R VTW +P R + +T +E G D+ +E VQWP L+ +TFG NQPI
Sbjct: 51 CLEALIVALNETCDGKSWYTSTKELQLASLDFCIACRNCQTVHLNVDEQIPRRLLASADAPPPHPKRLCW-----TRVPRLRSRRVTWNMPTAAKLRTPIFAMTDMEYLEFGDAFGDSLEAVPWPEHLRTMEFHHDSPFDQTIELVQWPPFLQNVTFGGDFNQPI 210
BLAST of mRNA_H-paniculata_contig17678.4211.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 6.450e-20 Identity = 65/166 (39.16%), Postives = 82/166 (49.40%), Query Frame = 1
Query: 7 CLDAFTVVLEQTCGGQRSFMSTKDLQLASLQFCVACRKFKTLHVRVKDRTPRALWAPAAPPIPEPIHNTRRSKKPTRVPLLRPRTVTWLIPLEMLSRC-------VD-------------------RLTGVECFIVGGGLDRYVEAVQWPASLRELTFGDACNQPI 426
CL TV L +TC G+ + STK+LQLASL+ C+ACR ++TLH+ V TPR L A A P P P + TRVP LR R TW +P R VD RL +E F L+R ++ V WPASLR++ G NQPI
Sbjct: 136 CLKTLTVALNETCDGKSWYTSTKELQLASLELCMACRHYQTLHLTVDAHTPRRLLAAADAPSPHP-----KRLCGTRVPRLRARRATWNVPTASGMRTSIFATMDVDYLEFGQAFHGSLDAIVWPRRLKTIE-FRQSSPLNRLLDGVSWPASLRKVCLGHDFNQPI 295
BLAST of mRNA_H-paniculata_contig17678.4211.1 vs. uniprot
Match: D7FXS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS2_ECTSI) HSP 1 Score: 92.0 bits (227), Expect = 6.860e-20 Identity = 59/138 (42.75%), Postives = 75/138 (54.35%), Query Frame = 1
Query: 4 RCLDAFTVVLEQTCGGQRSFMSTKDLQLASLQFCVACRKFKTLHVRVKD-RTPRALWAPAAPPIPEPIHNTRRSKKP--TRVPLLRPRTVTWLIPLEMLSRCVDRLTGVECFIVGGGLDRYVEAVQWPASLRELTFGD 408
RCL+AF V L +C G + STK+LQLASLQFCV CRK +LH+ V + P LW A +K+P T VP+ RPR VTW P +LS VE F+V D V+ V WP L++L FG+
Sbjct: 6 RCLEAFAVALNTSCDGNVWYTSTKELQLASLQFCVKCRKVPSLHLAVNNAHVPARLWNDHAA-----TEARTGAKRPSTTPVPVFRPREVTWGRPAWLLSDICLVFAKVERFLVRQ--DTVVDDVVWPCRLKKLFFGE 136
BLAST of mRNA_H-paniculata_contig17678.4211.1 vs. uniprot
Match: A0A6H5JRK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK5_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 8.650e-18 Identity = 53/127 (41.73%), Postives = 73/127 (57.48%), Query Frame = 1
Query: 25 VVLEQTCGGQRSFMSTKDLQLASLQFCVACRKFKTLHVRVKDRTPRALWAPAAPPIPEPIHNTRRSKKPTRVPLLRPRTVTWLIPLEM-LSRCVDRLTGVECFIVGGGLDRYVEAVQWPASLRELTF 402
+ L + C G+R + STK+LQLASL+FC+ACRK++ L ++V +TPR L A P P H R + TRVP LR R V W +P L + L V C GG + +EAV WP L+++ F
Sbjct: 23 LALNEMCDGKRWYTSTKELQLASLEFCLACRKYQILELKVDAQTPRNLLAAVDAP---PPHTKRPCR--TRVPRLRARRVKWNMPTATELRTLMFALKDVNCLRFGGVFNGSLEAVVWPPPLKQIIF 144
BLAST of mRNA_H-paniculata_contig17678.4211.1 vs. uniprot
Match: A0A6H5JYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE) HSP 1 Score: 89.4 bits (220), Expect = 1.080e-17 Identity = 57/133 (42.86%), Postives = 74/133 (55.64%), Query Frame = 1
Query: 43 CGGQRSFMSTKDLQLASLQFCVACRKFKTLHVRVKDRTPRALWAPAAPPIPEPIHNTRRSKKP--TRVPLLRPRTVTWLIPLEM-LSRCVDRLTGVECFIVGGGLDRYVEAVQWPASLRELTF--GDACNQPI 426
C G+R + STK+LQ ASL+FC+ACRK++TL +RV +TPR L A P P SK+P TRVP LR R V W +P L + L V G + +E+V WP L+E+ F G NQPI
Sbjct: 2 CDGKRWYTSTKELQQASLEFCIACRKYQTLRLRVDVQTPRTLLAAVDAPSPH-------SKRPCRTRVPRLRARRVIWNMPTATELKSPIFALKDVVRLDFGPAFEGSLESVAWPQRLKEIDFSWGSLFNQPI 127
BLAST of mRNA_H-paniculata_contig17678.4211.1 vs. uniprot
Match: A0A6H5K0U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U4_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 1.300e-17 Identity = 59/132 (44.70%), Postives = 72/132 (54.55%), Query Frame = 1
Query: 4 RCLDAFTVVLEQTCG--GQRS-FMSTKDLQLASLQFCVACRKFKTLHVRVKDRTPRALWAPAAPPIPEPIHNTRRSKKPTRVPLLRPRTVTW-LIPLEMLSRCVDRLTGVECFIVGGGLDRYVEAVQWPASL 387
R LD VVL Q CG GQ+ F STK+LQLASLQ C ACR LH+RV TP L APA P + S++ TRVP LR R V+W L + LS + L + F L+ ++AV WP SL
Sbjct: 28 RFLDVVIVVLNQACGDGGQKHWFASTKELQLASLQLCEACRDAAALHLRVNTSTPLRLLAPADSP-------SDGSEEGTRVPRLRAREVSWDLTSADRLSSSIYALASAQVFTFSDSLNAVLDAVVWPTSL 152
BLAST of mRNA_H-paniculata_contig17678.4211.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 1.920e-17 Identity = 51/112 (45.54%), Postives = 67/112 (59.82%), Query Frame = 1
Query: 7 CLDAFTVVLEQTCGGQRSFMSTKDLQLASLQFCVACRKFKTLHVRVKDRTPRALWAPAAPPIPEPIHNTRRSKKPTRVPLLRPRTVTW-LIPLEMLSRCVDRLTGVECFIVG 339
CL+A + L +TC G+ + STK+LQLASL+FCVACR ++TLH++V + PR L A A P P P R TRVP LR R VTW + LS + +T V+C G
Sbjct: 113 CLNALVIALNETCNGESWYTSTKELQLASLEFCVACRNYQTLHLKVDAQIPRRLLARADAPPPHPELLCR-----TRVPRLRARRVTWGMRKAAELSIPIFAMTDVDCLKFG 219
BLAST of mRNA_H-paniculata_contig17678.4211.1 vs. uniprot
Match: A0A6H5JZZ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 2.420e-17 Identity = 56/133 (42.11%), Postives = 75/133 (56.39%), Query Frame = 1
Query: 7 CLDAFTVVLEQTCGGQRSFMSTKDLQLASLQFCVACRKFKTLHVRVKDRTPRALWAPAAPPIPEPIHNTRRSKKPTRVPLLRPRTVTWLIPLEMLSRC-VDRLTGVECFIVGGGLDRYVEAVQWPASLRELTF 402
CL+A V L +T G+ + STK+LQLASL+FC+ACR ++TLH+ V R PR L A A P P H R S++ RVP LR R VTW +P R + L ++ G + +EAV WP L + F
Sbjct: 36 CLNAIYVALGETRDGKSWYTSTKELQLASLEFCMACRAYQTLHLIVDVRIPRMLLAAADGP---PQHPKRLSRR--RVPRLRARHVTWNMPTAAELRSPIFALMDLDHLDFGSAFEGSLEAVTWPRRLESIAF 163 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17678.4211.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17678.4211.1 >prot_H-paniculata_contig17678.4211.1 ID=prot_H-paniculata_contig17678.4211.1|Name=mRNA_H-paniculata_contig17678.4211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=179bp MRCLDAFTVVLEQTCGGQRSFMSTKDLQLASLQFCVACRKFKTLHVRVKDback to top mRNA from alignment at H-paniculata_contig17678:2010..2546- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17678.4211.1 ID=mRNA_H-paniculata_contig17678.4211.1|Name=mRNA_H-paniculata_contig17678.4211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=537bp|location=Sequence derived from alignment at H-paniculata_contig17678:2010..2546- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17678:2010..2546- >mRNA_H-paniculata_contig17678.4211.1 ID=mRNA_H-paniculata_contig17678.4211.1|Name=mRNA_H-paniculata_contig17678.4211.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at H-paniculata_contig17678:2010..2546- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |