mRNA_H-paniculata_contig17678.4210.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17678.4210.1
Unique NamemRNA_H-paniculata_contig17678.4210.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17678.4210.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17678contigH-paniculata_contig17678:531..1198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size668
Cds size486
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17678.4210.1prot_H-paniculata_contig17678.4210.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17678 707..1192 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929381.8085105-UTR-H-paniculata_contig17678:530..7061622929381.8085105-UTR-H-paniculata_contig17678:530..706Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17678 531..706 +
1691480838.8829536-UTR-H-paniculata_contig17678:530..7061691480838.8829536-UTR-H-paniculata_contig17678:530..706Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17678 531..706 +
1622929381.8375645-UTR-H-paniculata_contig17678:1192..11981622929381.8375645-UTR-H-paniculata_contig17678:1192..1198Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17678 1193..1198 +
1691480838.9011145-UTR-H-paniculata_contig17678:1192..11981691480838.9011145-UTR-H-paniculata_contig17678:1192..1198Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17678 1193..1198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929381.8232343-CDS-H-paniculata_contig17678:706..11921622929381.8232343-CDS-H-paniculata_contig17678:706..1192Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17678 707..1192 +
1691480838.8929572-CDS-H-paniculata_contig17678:706..11921691480838.8929572-CDS-H-paniculata_contig17678:706..1192Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17678 707..1192 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17678.4210.1

>prot_H-paniculata_contig17678.4210.1 ID=prot_H-paniculata_contig17678.4210.1|Name=mRNA_H-paniculata_contig17678.4210.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp
MSICQKQKLPEKRFSLLCSTQNTKVTQNSSVRHSIPLSLLERQVYTPHHT
KLNTNSAKLKCRDNEMPQRNNTQEALVASMSVKKVPHAHTYTHQPQPFAC
AITVKSLGARQTNLPTNCGDSPLYSPPAFSCRAQRRPECTPIPHLVRCHP
PYPLSATDNKA*
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mRNA from alignment at H-paniculata_contig17678:531..1198+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17678.4210.1 ID=mRNA_H-paniculata_contig17678.4210.1|Name=mRNA_H-paniculata_contig17678.4210.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=668bp|location=Sequence derived from alignment at H-paniculata_contig17678:531..1198+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCACAGTTGCATTGAACATCGTGTATGTTCTGTATTACATCAAAAGGT
CTTGACTATCAGCATGTTACACACGGCGAAGCGGAGCGCAGTGGACGAAC
CCATCTATAATCCGCACGCTCTAACCGCCCCCCGTTTCTTCTACATCGCG
AAAGGGAAGAATGTCGGGTTGGTTGTATGAGCATCTGTCAAAAACAAAAA
CTTCCAGAGAAGAGGTTTTCGCTCCTGTGCTCAACCCAAAACACCAAAGT
CACTCAAAACTCCAGTGTCCGCCACTCCATTCCTCTCTCTCTCCTGGAAC
GCCAGGTTTACACACCACACCACACCAAATTAAACACCAATTCAGCGAAA
TTAAAATGCCGAGACAACGAGATGCCACAGCGAAACAATACACAGGAAGC
ACTAGTTGCCTCCATGTCCGTGAAGAAAGTTCCGCACGCACACACATACA
CACATCAGCCCCAGCCCTTCGCGTGCGCAATCACCGTCAAGAGCCTGGGG
GCAAGGCAAACAAACCTACCTACCAACTGCGGGGACAGTCCTCTTTACTC
TCCACCAGCTTTCTCTTGTAGAGCTCAACGGCGACCCGAATGCACTCCGA
TACCCCACCTTGTCAGATGTCATCCACCATATCCTTTGTCAGCTACTGAC
AACAAGGCGTGACCCCGC
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Coding sequence (CDS) from alignment at H-paniculata_contig17678:531..1198+

>mRNA_H-paniculata_contig17678.4210.1 ID=mRNA_H-paniculata_contig17678.4210.1|Name=mRNA_H-paniculata_contig17678.4210.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at H-paniculata_contig17678:531..1198+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCATCTGTCAAAAACAAAAACTTCCAGAGAAGAGGTTTTCGCTCCT
GTGCTCAACCCAAAACACCAAAGTCACTCAAAACTCCAGTGTCCGCCACT
CCATTCCTCTCTCTCTCCTGGAACGCCAGGTTTACACACCACACCACACC
AAATTAAACACCAATTCAGCGAAATTAAAATGCCGAGACAACGAGATGCC
ACAGCGAAACAATACACAGGAAGCACTAGTTGCCTCCATGTCCGTGAAGA
AAGTTCCGCACGCACACACATACACACATCAGCCCCAGCCCTTCGCGTGC
GCAATCACCGTCAAGAGCCTGGGGGCAAGGCAAACAAACCTACCTACCAA
CTGCGGGGACAGTCCTCTTTACTCTCCACCAGCTTTCTCTTGTAGAGCTC
AACGGCGACCCGAATGCACTCCGATACCCCACCTTGTCAGATGTCATCCA
CCATATCCTTTGTCAGCTACTGACAACAAGGCGTGAATGAGCATCTGTCA
AAAACAAAAACTTCCAGAGAAGAGGTTTTCGCTCCTGTGCTCAACCCAAA
ACACCAAAGTCACTCAAAACTCCAGTGTCCGCCACTCCATTCCTCTCTCT
CTCCTGGAACGCCAGGTTTACACACCACACCACACCAAATTAAACACCAA
TTCAGCGAAATTAAAATGCCGAGACAACGAGATGCCACAGCGAAACAATA
CACAGGAAGCACTAGTTGCCTCCATGTCCGTGAAGAAAGTTCCGCACGCA
CACACATACACACATCAGCCCCAGCCCTTCGCGTGCGCAATCACCGTCAA
GAGCCTGGGGGCAAGGCAAACAAACCTACCTACCAACTGCGGGGACAGTC
CTCTTTACTCTCCACCAGCTTTCTCTTGTAGAGCTCAACGGCGACCCGAA
TGCACTCCGATACCCCACCTTGTCAGATGTCATCCACCATATCCTTTGTC
AGCTACTGACAACAAGGCGTGA
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