prot_H-paniculata_contig17673.4208.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig17673.4208.1
Unique Nameprot_H-paniculata_contig17673.4208.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length144
Homology
BLAST of mRNA_H-paniculata_contig17673.4208.1 vs. uniprot
Match: A0A6H5KSS9_9PHAE (DNA replication complex GINS protein SLD5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSS9_9PHAE)

HSP 1 Score: 242 bits (618), Expect = 4.350e-79
Identity = 123/144 (85.42%), Postives = 134/144 (93.06%), Query Frame = 0
Query:    1 MELDRLRYSLSKYLRTRLRKVERDALHVLASGQ-EMEGRLSDKERQHAKSYVDLLEEHFTKACLSQMPSNFRSLTNTSREENMVQEPNLDNFVVCRAKEDVGRVHIGEAPGREESSMDLRSGDMFIVRYRPIRTLVLEGRIDLI 143
            MELDRLRYSLSKYLRTRLRKVERDALHVLA+   EM+GRLSD+ER+HAK YVD+LE+HFT+ CLSQMPSNFRSLTNTS+EENMVQEPNLD FVVCRA++DVG V IGEA GREESSMDLR GDMFIVRYRPIRTLVLEGR+DLI
Sbjct:   93 MELDRLRYSLSKYLRTRLRKVERDALHVLATADGEMQGRLSDREREHAKGYVDMLEDHFTRTCLSQMPSNFRSLTNTSQEENMVQEPNLDTFVVCRARDDVGLVQIGEAAGREESSMDLRQGDMFIVRYRPIRTLVLEGRVDLI 236          
BLAST of mRNA_H-paniculata_contig17673.4208.1 vs. uniprot
Match: D8LTQ1_ECTSI (DNA replication complex GINS protein SLD5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTQ1_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 1.440e-77
Identity = 122/144 (84.72%), Postives = 133/144 (92.36%), Query Frame = 0
Query:    1 MELDRLRYSLSKYLRTRLRKVERDALHVLASGQ-EMEGRLSDKERQHAKSYVDLLEEHFTKACLSQMPSNFRSLTNTSREENMVQEPNLDNFVVCRAKEDVGRVHIGEAPGREESSMDLRSGDMFIVRYRPIRTLVLEGRIDLI 143
            MELDRLRYSLSKYLRTRLRKVERDALHVLA+   EM+GRLSD+ER+HAK YVD+LE+HFT+ CLSQMPSNFRSLTNTS+EENMVQEPNLD FVVCRA++DVG V IGEA GREESSMDLR GDMFIVRYRPIRTLVL GR+DLI
Sbjct:   93 MELDRLRYSLSKYLRTRLRKVERDALHVLATVDGEMQGRLSDREREHAKGYVDMLEDHFTRTCLSQMPSNFRSLTNTSQEENMVQEPNLDTFVVCRARDDVGLVQIGEAAGREESSMDLRQGDMFIVRYRPIRTLVLGGRVDLI 236          
BLAST of mRNA_H-paniculata_contig17673.4208.1 vs. uniprot
Match: A0A7S1CA29_9STRA (DNA replication complex GINS protein SLD5 n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CA29_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.380e-26
Identity = 56/142 (39.44%), Postives = 93/142 (65.49%), Query Frame = 0
Query:    1 MELDRLRYSLSKYLRTRLRKVERDALHVLASGQEMEGRLSDKERQHAKSYVDLLEEHFTKACLSQMPSNFRSLTNTSREENMVQEPNLDNFVVCRAKEDVGRVHIGEAPGREESSMDLRSGDMFIVRYRPIRTLVLEGRIDL 142
            ME+DR+++ +S YLRTRL K++R A+H+L +  EM  R+S +E +    YVD LE+HF K+ +  +P+ +R LT++S+  +MV+ PN D  V CR  EDVG   + +    E  S+ +  G+ F+V++  +R+LV  G+++L
Sbjct:  128 MEIDRVKFLVSSYLRTRLFKIQRYAVHLLRTS-EMHARMSPEEERFTVGYVDALEQHFHKSFMDAVPAKYRGLTDSSKRTDMVRRPNADTHVFCRVVEDVGDHQLDDDAFAEPLSLSI--GNAFVVKFSSVRSLVEAGKVEL 266          
BLAST of mRNA_H-paniculata_contig17673.4208.1 vs. uniprot
Match: A0A6A3MJ49_9STRA (DNA replication complex GINS protein SLD5 n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MJ49_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.880e-25
Identity = 62/143 (43.36%), Postives = 87/143 (60.84%), Query Frame = 0
Query:    1 MELDRLRYSLSKYLRTRLRKVERDALHVLASGQEMEGRLSDKERQHAKSYVDLLEEHFTKACLSQMPSNFRSLTNTSREENMVQEPNLDNFVVCRAKEDVGRVHIGEAPGREESSMDLRSGDMFIVRYRPIRTLVLEGRIDLI 143
            ME+DRLRY++S YLRTRLRK+E+ A+ +L S   +  RLS KER  A+ +V L E H  +  L++    +RSLT    +E MV EPNLD+FV C  KE    V + E  G     + +   D +++RYR I++ V  G+I LI
Sbjct:   87 MEIDRLRYTVSSYLRTRLRKIEKFAIQIL-SDPTLTQRLSLKERNFAQQFVMLFESHVNELALNKFNQEYRSLT----DEGMVSEPNLDSFVFCEGKEGAEAVQVDEKGG---DFVQMHQADRYVLRYRSIKSQVESGKIGLI 221          
BLAST of mRNA_H-paniculata_contig17673.4208.1 vs. uniprot
Match: A0A8K1CTT8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTT8_PYTOL)

HSP 1 Score: 103 bits (258), Expect = 6.480e-25
Identity = 64/143 (44.76%), Postives = 89/143 (62.24%), Query Frame = 0
Query:    1 MELDRLRYSLSKYLRTRLRKVERDALHVLASGQEMEGRLSDKERQHAKSYVDLLEEHFTKACLSQMPSNFRSLTNTSREENMVQEPNLDNFVVCRAKEDVGRVHIGEAPGREESSMDLRSGDMFIVRYRPIRTLVLEGRIDLI 143
            ME+DRL+Y +S YLRTRLRK E+ A H+L +   +  RLS KE Q AK YV L + H ++  L++ P   RSLT     E MV EP+LD+FV C +KE +G++   +  G E  SM    GD  +VRYR ++  V EG++ L+
Sbjct:   81 MEIDRLKYMVSSYLRTRLRKTEKFAQHIL-NDPVLTQRLSQKEIQFAKQYVMLFDNHVSELALARFPDEHRSLT----AEGMVVEPDLDSFVFCESKESLGQLQCDDN-GVEYISM--HQGDRHVVRYRSVKNHVEEGQVGLL 215          
BLAST of mRNA_H-paniculata_contig17673.4208.1 vs. uniprot
Match: UPI001CB8EF1B (DNA replication complex GINS protein SLD5 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8EF1B)

HSP 1 Score: 103 bits (258), Expect = 7.450e-25
Identity = 54/146 (36.99%), Postives = 98/146 (67.12%), Query Frame = 0
Query:    1 MELDRLRYSLSKYLRTRLRKVERDALHVLASGQEMEGRLSDKERQHAKSYVDLLEEHFTKACLSQMPSNFRS---LTNTSREENMVQEPNLDNFVVCRAKEDVGRVHIGEAPGREESSMDLRSGDMFIVRYRPIRTLVLEGRIDLI 143
            M++DR  + L  YLRTRL+K+E+  L++  +  +   RLS +E+ +AK  +  L +HF ++ LS++P  ++S    ++ S E++MV EP LD FV+CR ++ +G + + ++   EE+ +D+ +GD++ VRY+PI+ LV  G++DL+
Sbjct:   79 MDIDRTLFLLRSYLRTRLQKIEKFMLYIQKTADQWT-RLSSQEQDYAKDSIKNLSQHFEQSVLSKLPDRYKSHLKQSDISEEDDMVPEPKLDAFVICRTRKFLGALPVDDSG--EENPLDMYAGDIYAVRYKPIKLLVESGQLDLV 221          
BLAST of mRNA_H-paniculata_contig17673.4208.1 vs. uniprot
Match: A0A836CPL9_9STRA (DNA replication complex GINS protein SLD5 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPL9_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.970e-24
Identity = 65/187 (34.76%), Postives = 96/187 (51.34%), Query Frame = 0
Query:    1 MELDRLRYSLSKYLRTRLRKVERDALHVLASGQEM--EGRLSD------------------------------------------KERQHAKSYVDLLEEHFTKACLSQMPSNFRSLTNTSREENMVQEPNLDNFVVCRAKEDVGRVHIGEAPGREESSMDLRSGDMFIVRYRPIRTLVLEGRIDLI 143
            MEL+R+R+ ++KYLRTR+ K+ERD  ++L++ +EM   GRLSD                                          +E  +AK Y DLL  H     L  +P  +  + + +    ++ EP+LD FVVCR  EDVG V I      + S ++LR+GD +++RYRPIR  VL+G I+LI
Sbjct:  101 MELNRIRFGVTKYLRTRVHKIERDVFYILSNTKEMLSSGRLSDHSRLYCHHVVILAQQRYCTEQRQSSRALRAGEVICIWCSYIARELTYAKVYCDLLHGHLQSTVLDHLPDAYADIRSQAGGAQIIAEPDLDVFVVCRVVEDVGVVEIS---AEQNSQIELRAGDEYVMRYRPIRDFVLDGSIELI 284          
BLAST of mRNA_H-paniculata_contig17673.4208.1 vs. uniprot
Match: I1HU22_BRADI (DNA replication complex GINS protein SLD5 n=20 Tax=BOP clade TaxID=359160 RepID=I1HU22_BRADI)

HSP 1 Score: 102 bits (254), Expect = 2.560e-24
Identity = 59/146 (40.41%), Postives = 93/146 (63.70%), Query Frame = 0
Query:    1 MELDRLRYSLSKYLRTRLRKVERDALHVLASGQEMEGRLSDKERQHAKSYVDLLEEHFTKACLSQMPSNFRSLTN---TSREENMVQEPNLDNFVVCRAKEDVGRVHIGEAPGREESSMDLRSGDMFIVRYRPIRTLVLEGRIDLI 143
            M+LDR  + L  YLR RL+K+E+  +H+  S   M  RLS +E++ AKS  +++E+H  ++ LS++P  + S+T    +S E++MV EP LD FV C+ K DVG   + +     E  +DL + D++++RY+ I+ LV  GRIDLI
Sbjct:   74 MDLDRALFLLRSYLRLRLQKIEKYMIHISKSDDLM-SRLSLQEQRFAKSCTEIMEKHLEQSVLSKLPYGYDSVTRQSLSSTEDDMVPEPQLDTFVFCKTKSDVGAFQLDDIG---EEIVDLVADDLYVLRYKSIKGLVENGRIDLI 215          
BLAST of mRNA_H-paniculata_contig17673.4208.1 vs. uniprot
Match: A0A7R9SX76_9CHLO (DNA replication complex GINS protein SLD5 n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7R9SX76_9CHLO)

HSP 1 Score: 103 bits (256), Expect = 2.730e-24
Identity = 60/150 (40.00%), Postives = 87/150 (58.00%), Query Frame = 0
Query:    1 MELDRLRYSLSKYLRTRLRKVERDALHVLASGQEMEGRLSDKERQHAKSYVDLLEEHFTKACLSQMPSNFRSL----TNTSREENMVQEPNLDNFVVCRAKEDVGRVHIGEA---PGREESSMDLRSGDMFIVRYRPIRTLVLEGRIDLI 143
            MELDR++Y L  YLRTRL K+E  +LH++     +  RLS +ER+   S+ DLL++      L  +P  F SL    T      +MV  PNLD  V  R + D+GRV++G +   P    S +D+ +GD F+VRYRPI  L+  G ++L+
Sbjct:  101 MELDRVKYLLRAYLRTRLYKLETFSLHIMQDSN-LFSRLSQRERRFLGSHTDLLDKLHDDLVLKHLPQQFNSLVQQDTLVGETNDMVPSPNLDTHVFIRVRGDLGRVNVGYSESEPNGRPSEVDMSAGDQFVVRYRPIAQLLANGEVELL 249          
BLAST of mRNA_H-paniculata_contig17673.4208.1 vs. uniprot
Match: A0A6J1D0B0_MOMCH (DNA replication complex GINS protein SLD5 n=3 Tax=Cucurbitaceae TaxID=3650 RepID=A0A6J1D0B0_MOMCH)

HSP 1 Score: 102 bits (254), Expect = 3.600e-24
Identity = 58/150 (38.67%), Postives = 98/150 (65.33%), Query Frame = 0
Query:    1 MELDRLRYSLSKYLRTRLRKVERDALHVLASGQEMEGRLSDKERQHAKSYVDLLEEHFTKACLSQMPSNFRSLTNTS---REENMVQEPNLDNFVVCRAKEDVGRVHIGE----APGREESSMDLRSGDMFIVRYRPIRTLVLEGRIDLI 143
            M+LDR ++ L  Y+R RL+K+E+  L++L S  E+ GRLS++ER  A+     ++ HF ++ LS++P+N++S+   S    E++MV EP LD FVVC++KE +  + + +    A  R E   ++ +  + I+RY+PI++LV  GRIDL+
Sbjct:   82 MDLDRTQFLLRSYIRIRLQKIEKYMLYMLKSD-ELFGRLSEEERVFAERCCHDVKSHFDESVLSKLPNNYQSILRQSIISEEDDMVPEPPLDTFVVCKSKEYLEHIQLEDEDERASSRLEEPFEMEANVLHIIRYKPIKSLVESGRIDLL 230          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17673.4208.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSS9_9PHAE4.350e-7985.42DNA replication complex GINS protein SLD5 n=1 Tax=... [more]
D8LTQ1_ECTSI1.440e-7784.72DNA replication complex GINS protein SLD5 n=1 Tax=... [more]
A0A7S1CA29_9STRA2.380e-2639.44DNA replication complex GINS protein SLD5 n=1 Tax=... [more]
A0A6A3MJ49_9STRA1.880e-2543.36DNA replication complex GINS protein SLD5 n=4 Tax=... [more]
A0A8K1CTT8_PYTOL6.480e-2544.76Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI001CB8EF1B7.450e-2536.99DNA replication complex GINS protein SLD5 n=1 Tax=... [more]
A0A836CPL9_9STRA1.970e-2434.76DNA replication complex GINS protein SLD5 n=1 Tax=... [more]
I1HU22_BRADI2.560e-2440.41DNA replication complex GINS protein SLD5 n=20 Tax... [more]
A0A7R9SX76_9CHLO2.730e-2440.00DNA replication complex GINS protein SLD5 n=2 Tax=... [more]
A0A6J1D0B0_MOMCH3.600e-2438.67DNA replication complex GINS protein SLD5 n=3 Tax=... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008591GINS complex subunit Sld5PIRSFPIRSF007764GINS_Sld5coord: 1..143
e-value: 1.1E-30
score: 105.0
IPR008591GINS complex subunit Sld5PANTHERPTHR21206SLD5 PROTEINcoord: 1..143
NoneNo IPR availableGENE3D1.20.58.1030coord: 1..133
e-value: 1.5E-37
score: 131.3
NoneNo IPR availableSUPERFAMILY160059PriA/YqbF domaincoord: 87..143
IPR031633DNA replication complex GINS protein SLD5, C-terminalPFAMPF16922SLD5_Ccoord: 86..143
e-value: 9.5E-16
score: 57.7
IPR036224GINS, helical bundle-like domain superfamilySUPERFAMILY158573GINS helical bundle-likecoord: 1..77

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17673contigH-paniculata_contig17673:1028..4826 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17673.4208.1mRNA_H-paniculata_contig17673.4208.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig17673 389..4868 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig17673.4208.1 ID=prot_H-paniculata_contig17673.4208.1|Name=mRNA_H-paniculata_contig17673.4208.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=144bp
MELDRLRYSLSKYLRTRLRKVERDALHVLASGQEMEGRLSDKERQHAKSY
VDLLEEHFTKACLSQMPSNFRSLTNTSREENMVQEPNLDNFVVCRAKEDV
GRVHIGEAPGREESSMDLRSGDMFIVRYRPIRTLVLEGRIDLI*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008591GINS_Sld5
IPR031633SLD5_C
IPR036224GINS_bundle-like_dom_sf