prot_H-paniculata_contig17658.4205.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig17658.4205.1
Unique Nameprot_H-paniculata_contig17658.4205.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length1002
Homology
BLAST of mRNA_H-paniculata_contig17658.4205.1 vs. uniprot
Match: A0A6H5KTD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD5_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 3.830e-34
Identity = 163/542 (30.07%), Postives = 216/542 (39.85%), Query Frame = 0
Query:   64 MGGKTSSKMRKLAREV-ERPRCIGHAVRDDLLAAINQFVSQGCMRFDSFRKVWASRRLSCLHFSIPRHCEPVWVLQSMLAAALDLLMKDDTGVPATEAGVGPASVGKSRNSPPLVRIRAAGTASSPRVGRASASADG-----------------------------------------------------------GSRLDDPSGPTLPLHEVGPGSLPFQIGALYALYVLQGTQTRRN-PQPVRVTARGVVALLMLRRRLKAAGALAIDALAVLERLVRG--------------------------------GAKKLQPAAYSGPGTLNYVDSILPLTTVSASRLHQQTMDKIAKEQVEAAKKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAETPRAQRSAQPVQPNIWGPRNRVASAIETTSAGAKRLAKDYGRYSAALRIAR----SVSGKAHHEADNGTEGHGEKTGRLGADCSINSNPHQPSGEARNKRFQRDLAAMLRGIRSGVDLPTPPQNAHGLESLAHYP 508
            +GG+ ++  RK+++    RPR I  AVR DL+  I  F+SQG M F SFR VW SR+LS LHF++PR      +LQ   + ALDLLMKDD    A E  + P   G+                      R  A   G                                                            + +D P  PTLP  E GPGSLPFQIGALYALY L GTQ   + P P+RV++  ++AL  LR RLKAAG  A+DALAVL RLV G                                G   LQ AAY+GP +L +V+S +  T++++    Q+   K  + +   AK+A                                         E       +   Q + WGPR RV +A+E  S   K L+  Y  Y+AAL  AR    + +G +  + D      G      G     NSN        R++ F RDL A+L   R       P    HGL+ LA +P
Sbjct:   18 LGGRVTATYRKISKTAGSRPRMISDAVRHDLMDGIGHFISQGSMSFSSFRDVWQSRKLSVLHFAVPRRVNESALLQLSFSVALDLLMKDDEHN-AVEDEMDPD--GEXXXXXXXXXXXXXXXXXXXXXHRKXAXXGGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPTATPVDPP--PTLPALETGPGSLPFQIGALYALYCLHGTQLFSSAPMPIRVSSEAMLALSRLRWRLKAAGPQALDALAVLSRLVLGDGCNPGGGDGVXXXXXXXXXXXXXXXXXXXTRGGSALQAAAYTGPCSLAFVESNISTTSMTSKAQAQEVETKSREVEAAMAKEARAAARARTALE-----------------------------GEMSTGTPPSGAAQTSSWGPRARVEAAVEAVSEQIKGLSSTYREYAAALAEARVPTITTAGTSPADDDXXXXXXGSTMDDAG-----NSNTVGGHTAGRSEWFGRDLEAILDRTRRKKPFLDP----HGLKELALHP 516          
BLAST of mRNA_H-paniculata_contig17658.4205.1 vs. uniprot
Match: D7G2A2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2A2_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 3.840e-23
Identity = 152/541 (28.10%), Postives = 205/541 (37.89%), Query Frame = 0
Query:   64 MGGKTSSKMRKLAREV-ERPRCIGHAVRDDLLAAINQFVSQGCMRFDSFRKVWASRRLSCLHFSIPRHCEPVWVLQSMLAAALDLLMKDDTGVPATEAGVGPAS---------------VGKSRNSPPLVRIRAAGTASSPRVGRASASADGGSRLDDPSG------------------------------------------PTLPLHEVGPGSLPFQIGALYALYVLQGTQTRRN-PQPVRVTARGVVALLMLRRRLKAAGALAIDALAVLERLVRGGAKKLQPAAYSGPGTLNYVDSILPLTTVSASRLHQQTMDKIAKEQVEAAKKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAETPRAQRSAQPVQPNIWGPRNRVASAIETTSAGAKRLAKDYGRYSAALRIAR----SVSGKAHHEADNGTEGHGEKTGRLGADCSINSNPHQPSGEARNKRFQRDLAAMLRGIRSGVDLPTPPQNAHGLESLAHYPLVVPPP--------ASSPPETLSIPSSPLPTLP 533
            +GG+ ++  RK+++    RPR I  AVR DL+  I QF+SQG M F SFR VW SR+LS LHF++PR      +LQ   + ALDLLMKDD    A E  + P                        PP  +   AG       GR+   A GG      +                                           PTLP HE GPGSLPFQIGALYALY L GTQ   + P PVRV+   ++AL+  +     A   + +A A + +  R  A+                          A R+ ++ M                                                     +  TP +  +    Q + WGPR RV +A+E  S   K L+  Y  Y+AAL  AR    + +G +  +            G  G     N+N        R++ F RDLAA+L   R    L  P    HGL+ LA +P   PPP        + SP    +  + PLP LP
Sbjct:   18 LGGRVTATYRKISKTAGARPRMISDAVRHDLMDGIGQFISQGSMSFSSFRDVWQSRKLSVLHFAVPRRVNENALLQLSFSVALDLLMKDDEHN-AGEDEMDPDGEXXXXXXXXXXXXXXXXXRAKQPPRGKRADAGGRGXXXXGRSITGARGGGVTQQAAAXXXXXXXXXXXGDAAXXXXXXXXXXXXXXXXSSPTATPVDLPPTLPAHETGPGSLPFQIGALYALYCLHGTQLFSSAPMPVRVSPEAMLALVQAQE----AEIRSREAEAAMAKEARAAAR--------------------------AKRVLEEEM-----------------------------------------------------STGTPPSGAA----QASSWGPRARVEAAVEAVSEPIKGLSSTYREYAAALAEARVPTITTAGTSPADXXXXXXXXXSTMGDAG-----NNNTVGGHTAGRSEWFGRDLAAILDRTRRKQPLLDP----HGLKELALHP--PPPPQLEAACATSGSPSHPPAFRALPLPVLP 459          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17658.4205.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTD5_9PHAE3.830e-3430.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2A2_ECTSI3.840e-2328.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019188Small nuclear RNA activating complex (SNAPc), subunit SNAP43PFAMPF09808SNAPc_SNAP43coord: 89..285
e-value: 5.3E-14
score: 52.6
IPR019188Small nuclear RNA activating complex (SNAPc), subunit SNAP43PANTHERPTHR15131SMALL NUCLEAR RNA ACTIVATING COMPLEX, POLYPEPTIDE 1coord: 89..285

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17658contigH-paniculata_contig17658:471..4296 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17658.4205.1mRNA_H-paniculata_contig17658.4205.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig17658 402..4296 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig17658.4205.1 ID=prot_H-paniculata_contig17658.4205.1|Name=mRNA_H-paniculata_contig17658.4205.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1002bp
MSKEKFSTDVIDGQGKVGDDNDNTVGDQDAESPDDDIEEQSFSTRQGAPS
SDWTVKQKREASSMGGKTSSKMRKLAREVERPRCIGHAVRDDLLAAINQF
VSQGCMRFDSFRKVWASRRLSCLHFSIPRHCEPVWVLQSMLAAALDLLMK
DDTGVPATEAGVGPASVGKSRNSPPLVRIRAAGTASSPRVGRASASADGG
SRLDDPSGPTLPLHEVGPGSLPFQIGALYALYVLQGTQTRRNPQPVRVTA
RGVVALLMLRRRLKAAGALAIDALAVLERLVRGGAKKLQPAAYSGPGTLN
YVDSILPLTTVSASRLHQQTMDKIAKEQVEAAKKAAATMAAAEIEATETR
VAEGVTIMGKSSSGTQRAGSASATAAETPRAQRSAQPVQPNIWGPRNRVA
SAIETTSAGAKRLAKDYGRYSAALRIARSVSGKAHHEADNGTEGHGEKTG
RLGADCSINSNPHQPSGEARNKRFQRDLAAMLRGIRSGVDLPTPPQNAHG
LESLAHYPLVVPPPASSPPETLSIPSSPLPTLPSQAVLFPRASRARSSSS
MSAAAIATAASAERRGTGKQTQTQTQTQTHAPISKQSLSSGRRNVRDHIL
ASVRALEESEENEQGSSEDRNEELPAMATRGARRIQNKGPVSSEQQGIMV
IDETSPTRSTSSAGNGLPDEIGEIFSEQDHRPELSQEDGNGSRDREREGE
VSDDAIIGATNESPARSLSRSGGTRNTRRGREGRARSSRGRGGSGRSRSE
MGGQVSSAAATERSAAARLHSYRETREREQEKEKSDGQGDDRTEEAEEES
DEDDEDDELRSFEAVMNDVMTLTSSRPCSSSSSSTTATAAASGDVGNNLP
GARNEYDDIKNINYLPPPPPPPPPPSPLTAKAGSKRSRTPEDRLPSSEND
DSAGAPAFKKSRDRAPRAHAPGVAARQTQPRRGGRGTGRGKGTDKGRGRG
TAVASERTSGRARRVSSIAAVEEAAAARKLEADRVKEAKAAGATRMREGG
SQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019188SNAPc_SNAP43