prot_H-paniculata_contig1765.4204.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1765.4204.1
Unique Nameprot_H-paniculata_contig1765.4204.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length284
Homology
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BLAST of mRNA_H-paniculata_contig1765.4204.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 4.330e-15
Identity = 49/118 (41.53%), Postives = 67/118 (56.78%), Query Frame = 0 
Query:   24 ALLNCEGAGSFVVEWTGWVTVETTIHVANGTTLEIVSSNSSDAAIDGDGAQQLFDVYNATLSISNVKLENGNGTYGGAIFGRYADVRCTGCRFFGNRASEEGGAINVKDSDVSFTGET 141
            A +NC G GSF VEW G V+++  I + +GT L +     + A IDG+G  +LF V NATL +S V+L +G+   GGAI    A +      F  N A   GGA+ + DS VS+ G T
Sbjct:  145 ANVNCSG-GSFQVEWRGSVSLDAPIFIVHGTDLNVTGGGEASAVIDGNGTTRLFSVDNATLRLSGVELRSGSSAIGGAIAASGATLAFNNTSFVNNSAGSNGGALWLTDSSVSWGGGT 261
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BLAST of mRNA_H-paniculata_contig1765.4204.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.800e-13
Identity = 48/118 (40.68%), Postives = 65/118 (55.08%), Query Frame = 0 
Query:   24 ALLNCEGAGSFVVEWTGWVTVETTIHVANGTTLEIVSSNSSDAAIDGDGAQQLFDVYNATLSISNVKLENGNGTYGGAIFGRYADVRCTGCRFFGNRASEEGGAINVKDSDVSFTGET 141
            A +NC G GSF VEW G V+++  I + +GT L +     + A IDG+G  +LF V NATL +  V+L +G    GGAI    A +      F  N A   GGA+ + DS VS+ G T
Sbjct: 2058 ANVNCSG-GSFQVEWRGSVSLDAPIFIVHGTDLNVTGGGEASAVIDGNGTTRLFSVDNATLRLRGVELRSGFSAIGGAIAASGATLAFHNTSFVNNSAGTNGGALWLTDSSVSWGGGT 2174
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1765.4204.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHH1_ECTSI4.330e-1541.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHG7_ECTSI1.800e-1340.68LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003368Polymorphic outer membrane protein repeatPFAMPF02415Chlam_PMPcoord: 198..214
e-value: 0.081
score: 13.4
IPR011050Pectin lyase fold/virulence factorSUPERFAMILY51126Pectin lyase-likecoord: 46..280

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1765contigH-paniculata_contig1765:4330..9162 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1765.4204.1mRNA_H-paniculata_contig1765.4204.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1765 4026..9162 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1765.4204.1 ID=prot_H-paniculata_contig1765.4204.1|Name=mRNA_H-paniculata_contig1765.4204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=284bp
MTCESKVQFLSVATMEDATGLANALLNCEGAGSFVVEWTGWVTVETTIHV
ANGTTLEIVSSNSSDAAIDGDGAQQLFDVYNATLSISNVKLENGNGTYGG
AIFGRYADVRCTGCRFFGNRASEEGGAINVKDSDVSFTGETYCLQNSAGS
DGGFLSATESSVVVFEGTSIFQDNISDGRGGVIHSFEAEEIKFNGRSRFY
NNAADHSGGAIWAQSTSLSFSREDSTVEFVNNSVATLFGGALALAGKEPL
TMNVSALFKNNSASTGGAVYLSGRATNSIISRTR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003368POMP_repeat
IPR011050Pectin_lyase_fold/virulence