mRNA_H-paniculata_contig1765.4204.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1765.4204.1
Unique NamemRNA_H-paniculata_contig1765.4204.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1765.4204.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.670e-14
Identity = 52/139 (37.41%), Postives = 72/139 (51.80%), Query Frame = 2 
Query:  311 CESKVQFLSVATMEDATGLANALLNCEGAGSFVVEWTGWVTVETTIHVANGTTLEIVSSNSSDAAIDGDGAQQLFDVYNATLSISNVKLENGNGTYGGAIFGRYADVRCTGCRFFGNRASEEGGAINVKDSDVSFTGET 727
            C ++ Q   V           A +NC G GSF VEW G V+++  I + +GT L +     + A IDG+G  +LF V NATL +S V+L +G+   GGAI    A +      F  N A   GGA+ + DS VS+ G T
Sbjct:  124 CSAEAQQAWVVEDSAQAQALAANVNCSG-GSFQVEWRGSVSLDAPIFIVHGTDLNVTGGGEASAVIDGNGTTRLFSVDNATLRLSGVELRSGSSAIGGAIAASGATLAFNNTSFVNNSAGSNGGALWLTDSSVSWGGGT 261
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BLAST of mRNA_H-paniculata_contig1765.4204.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 6.500e-13
Identity = 51/139 (36.69%), Postives = 70/139 (50.36%), Query Frame = 2 
Query:  311 CESKVQFLSVATMEDATGLANALLNCEGAGSFVVEWTGWVTVETTIHVANGTTLEIVSSNSSDAAIDGDGAQQLFDVYNATLSISNVKLENGNGTYGGAIFGRYADVRCTGCRFFGNRASEEGGAINVKDSDVSFTGET 727
            C ++ Q   V           A +NC G GSF VEW G V+++  I + +GT L +     + A IDG+G  +LF V NATL +  V+L +G    GGAI    A +      F  N A   GGA+ + DS VS+ G T
Sbjct: 2037 CSAEAQEAWVVEDSAQAQALAANVNCSG-GSFQVEWRGSVSLDAPIFIVHGTDLNVTGGGEASAVIDGNGTTRLFSVDNATLRLRGVELRSGFSAIGGAIAASGATLAFHNTSFVNNSAGTNGGALWLTDSSVSWGGGT 2174
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1765.4204.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHH1_ECTSI1.670e-1437.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHG7_ECTSI6.500e-1336.69LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1765contigH-paniculata_contig1765:4026..9162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue3.9e-15
Seed eggNOG ortholog2880.D7FHH1
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1157
Cds size852
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1765.4204.1prot_H-paniculata_contig1765.4204.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1765 4330..9162 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929381.3318222-UTR-H-paniculata_contig1765:4025..43291622929381.3318222-UTR-H-paniculata_contig1765:4025..4329Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1765 4026..4329 +
1691480838.6936655-UTR-H-paniculata_contig1765:4025..43291691480838.6936655-UTR-H-paniculata_contig1765:4025..4329Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1765 4026..4329 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929381.3511665-CDS-H-paniculata_contig1765:4329..45221622929381.3511665-CDS-H-paniculata_contig1765:4329..4522Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1765 4330..4522 +
1691480838.707571-CDS-H-paniculata_contig1765:4329..45221691480838.707571-CDS-H-paniculata_contig1765:4329..4522Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1765 4330..4522 +
1622929381.3628473-CDS-H-paniculata_contig1765:8503..91621622929381.3628473-CDS-H-paniculata_contig1765:8503..9162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1765 8504..9162 +
1691480838.717807-CDS-H-paniculata_contig1765:8503..91621691480838.717807-CDS-H-paniculata_contig1765:8503..9162Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1765 8504..9162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1765.4204.1

>prot_H-paniculata_contig1765.4204.1 ID=prot_H-paniculata_contig1765.4204.1|Name=mRNA_H-paniculata_contig1765.4204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=284bp
MTCESKVQFLSVATMEDATGLANALLNCEGAGSFVVEWTGWVTVETTIHV
ANGTTLEIVSSNSSDAAIDGDGAQQLFDVYNATLSISNVKLENGNGTYGG
AIFGRYADVRCTGCRFFGNRASEEGGAINVKDSDVSFTGETYCLQNSAGS
DGGFLSATESSVVVFEGTSIFQDNISDGRGGVIHSFEAEEIKFNGRSRFY
NNAADHSGGAIWAQSTSLSFSREDSTVEFVNNSVATLFGGALALAGKEPL
TMNVSALFKNNSASTGGAVYLSGRATNSIISRTR
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mRNA from alignment at H-paniculata_contig1765:4026..9162+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1765.4204.1 ID=mRNA_H-paniculata_contig1765.4204.1|Name=mRNA_H-paniculata_contig1765.4204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5137bp|location=Sequence derived from alignment at H-paniculata_contig1765:4026..9162+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCACCCCCAGCCCGACATTACCGTAACATATTGCTGCCGGTGTATTTCT
TATTTTGCACCTGGGCAAGACTAGGGTAAGTATACCCTATTTCTACGTGT
GAGCGGACGAGGTTCTGTCCGTTAGAGTCACGCCCATTGCTTGCCTGACT
GATTGTACCAACCCCCCAGCCGGACTTTTCCGTAGCATATTGCTGCCGGT
GTGCTGCAAATAGCATAGCTTGTCGCTCCAGTGCGGGAGGATAAGGGACG
CACACAGGTGAAGGCAGTTCGCACTGCGGTCGCCGTTGCGCCGGGCGTTG
AACAATGACGTGCGAATCCAAGGTTCAGTTCCTCAGTGTTGCCACGATGG
AGGATGCCACAGGTCTGGCAAATGCCCTCCTCAACTGCGAAGGCGCCGGA
TCGTTTGTCGTGGAATGGACTGGGTGGGTCACAGTGGAGACCACGATACA
TGTGGCGAACGGCACCACTCTCGAGATCGTCTCTTCTAACAGTTCAGGTA
TCGCTCGCAATCCCTACTTTTCCTAGTTGCGGATGTACTATTTAACTTCG
TGACTGGATGTGGAATCAATTATGGATGTCACCGTTGGCACCATCCACAC
TCCCCGTAGGCACAGTAGCGCAATCGCTGCATATGTATTGTACAGTACCG
TGCGTTTCAGCGTGCTCACACAAGGCAGACGTACTGCCACAGGTTGTTGT
ATAGCAGGTACGTGCTTCACGGCAGTGTGTGTCGAGGTGTTCGCCTTCAA
GTACCCATATGTTCTTTGAGTCCTTTTCACCCCTGGAATAATACTGCTGT
ATTTGATCATTTTTCGATTTTGCATGTGTTATTCTGTTAGATAGCAGAGG
GATTTCTCTATTTGTAATATTTTGATCTGGCGGGCGTTGAATACTCTAAT
TTGCCGACCTTTTCGATGCTTGATCGTATATCGAATATACTTCATATTAT
TCGCGTCACATGGACATCTCCCCAAACTCACACAGATATAGCGTTCATTC
CAGATGTCTCGTATTCAATCGTGTCTTATATCCGTATTTGTGCGGGAGGT
GCACTATTTTGAGCCAAACGTGTCCTGGGCAGCGTTTTCGAGCGTTTAGT
CGGCTTGGACTCTGATTCCATCCAGGTCTCCCAACAGGCTTGGATGCTGA
GTTTGTTTCAACCAATTTCCAACCTGCTGTACTGGGGGGCGGGTGTCAGT
CCTTCAATTAGGAACAAATATAATACAGGTGGCGATGCTACGTAAGAAAC
TCCTATTTGGGGCGAGGCTCGTGGCTCATTTTATGTCCGAGCCGAGCATC
ATTTCTTAAAGCCAATTCCTTATTTTCTGAACGCGTGCAAAGATGAATTT
CTTGAAGCAATTTTGTATTCTGCGAACAGATGTGGTACAGCACAGGAAGC
TGTACATTCCCTTTTTTTCTCGAGCGTTGCCTAGGCAAATCACCTACAAC
AGGCCTCGTAGCATACAGTAATGAGGTATTGAACGGTAGTGTACTTACCG
GCCCGTATTTGGCGGGGGGGGGGGGTATATTAAACATGTACACGTATGGT
GCCTTGTTCAATCTTTCGCTGGACACAATCCGGCGAAATCTTAATAACTC
TCCCAATATACTATGTCACGCCCGATAGGGGTCCATCGATGACAATTCGG
TCGGATACAATGAATTGATCGATTATTATTCGAAAACTGAAAACGGCGTG
TTGCACCCACGACCCAGGTCTTGAATATATCTTCGACTTACATTCGCTGA
AATCGCCTTTACCAGATGGGGAGAAAACGAAGATCAATCGCTCGTTCTGA
TCGGAGGATCCATTTTGATTTGATCGAGCATCATCTTGGGTGGCACGCGT
GAAAGTGAAAGGGGAAGGCTCGAAGTAATTATTAGAAGAGTACGTCGTGA
GCGTGGTTCATTTTATTCCGATCACCCGGGCGTACAAAATGCCGAAGAGG
GAAAGGGGAGTGTTATCGAGAGAGGTTTCGCACAGAGAACCAAAATCGAT
CACACACAAAAATATGTCGTGGTACGGTGAAAACGTGGCGGTATGGACGA
GTTACGACGGAAATTGTATTCATCCTCTAGCGCGTATTCGATTAACACAA
AATTTGACGCAATATGATATTCTGTTATCCTATCAGATACATCGCGATGT
ATCCGATATTCATATCACATCGCATATCAGTTGATATACAAAATGAAATG
ATAGGCTCGTCCTCATCCTCTAGAACCTCTTCGTACGCAGGAACAGGTCT
TTGAAATCTCATATATTTGTACCCCTGTCGTAGACTGTATTGACTCAGTT
ATTGGGAAGAGTATTGTTGGCCATTGCTATATGGTTTCTGGCACCTCCCA
ACAATGCTCTTGAAGCTCCCCAAAGTGAGCACATTGTCGATTGCGCGTGA
TGTATTGATCTAGAGAAAAATAGACACCTACACCTAAAATGACTTTCGTT
CAACGCAAAACAAGGCTTAGGAAAAAGAACGAGCGAACGTTCTTAGTTTT
CTTTGATTTTGACCTGAAATACAGGCATTTCAGTCAAACCACCTTGAAGA
GAACTTCGAGCCATCGGTCGTGCGTCAAAATTTCCGTGTTCAATTTTCGA
ATCCAACAAAGTCCGGCCAAGTTAGGAAAATCGGTCAATTCTCGTCTCGA
GCCCGATGAAGCGAATCCGCGATATCAGATAATTGACTGATTATCCTCAC
TCAGCCGGACCTTGTCGGATTCGGAGATCGAACACGGCAATTTTTTCGCA
CAACTCATGGCTCCAAGTTCTCTTGAAGGTGCCTTGACTGAATTGTTTGC
CTTGCAAGTCAACATGGAGGAAAACTCAAACCTGTCGCTCATTCTCTTTT
CGAGGTTGTGTTCTCCCTTCGACGAAAGTCCTGTTATCTCAGGTATGACG
AAATATTGAAATTCCTTCCCCGCTGAAACATGGTCCATGCGCACTGCCAG
GAAGTTGCGGAATACTATCAGGTATATTTTCACCCTCGAGTGATTTTTTC
CCTTACTTTTTGCAATCAATATACAACACCAGTACATTATTATGAATCCC
CTATGTTCAGATTCTTGGGCTGTACGGTTGTAGTACCGGGTAGGCAATAT
AGTGCTCTATACCTACCAGTCGGATCATATCATATCATATCATATCAGCT
GATTCGATGTAATATATCAACCTGATATTGATGTGAATATATATATATAT
ATATCGGCTTTTGGGGCTTCCGGTGATATGACACATATCAGATATAATAT
TGAGCATATATATCAATTGATATGATATAGCGATATGCATCCTTAACACC
GTCACACTGAGTAAATGAATGGTTGATTGCCGAGTCATCGAAGAAGGGGC
GATAAATGCAAAAAAGAAAAGCCCGATCCTCTTCTCAATTTGGTTCCTTC
GTTAAACAAAGTGATTTAAATACCCTCACCGCTCTACCGTAGGATGACTG
TTTAAGTGACCGTTGTATGATAGGAGGATCGCGGAGGGTTCTGAATAGGT
TTATGGTATCGTAGGAATTTGGATTGATGTTAAATCCATGTATTATATAG
GGGCCGCTCAAAGCCGCTAGTAATTCACTCGATGTTACATATATCCATGT
TTGAACCGAAAATCTCCCTCTGCTGCAATGGTGTGTAAGCGATTCATGAT
GCTGGGCACTTTTATCATGCACTGGCCCTGCTATGATCATGCCAGAGGCC
GAGGCTATTGTTCAGTCCAACGAACAGTTTCCACTTGGTCCGTCCGCATC
AATAGTAGAAAGTGTTTCATAAATACCTGGTAAAGGTCATAGCTTCTGGA
GTAAGATCACAAATGGGTGGCGACTTAGAAGGGCTCTTCGACGAAAATGC
TGCCGTGCATTAGCCACCCTCATCGAGCGTTAACCACGCTTGAAGAATTT
TCTGGTAAACTTATTACGTTGTTGATTCAAAAGTATACAAAGCAATTGGC
ACCAGCATCATAATTCAATTTACGTCTGGTACATCGAATTGCCACTTGGC
CTTAAAGGGCTATTGAGATCGAAATAATTGGTAGGAGGGATGATGGGTAG
GGTATCGTGTCTTATACTTGGCGGCGAGGCAAACAAACATCGGCTCCCCA
ACCTTTGAGAGTGATATGGCTGGCGCTCAGTTGATCAAGAGCTACGGTTT
AAGCTACTACGTGTTTCTATACCGAAGGGCTTGTAAACTCGCAATGTATT
CCTTTGTCACCGTCTGCAACGCATCATCTCTGTTTCAGTATCAACTCCCA
CCGGCTGCCTTCTTTGCGCCCTGCTGATCCCTCCGCCAGGGTATGCCACG
AGGACAAAGTTCCATCAGTGGCGGCTTTGAAGATGAAGGCCGGTCGTGTG
GTGGCAAATTCAATCATCATCCGAATAGAGTGGAACCAACTTGTTTGATT
TTACGTGTACGTTTCCAGGTGATAAATGCTCAAATAAAATTCCTTCCAAC
CTTGCACCCGTTTTTTGCTTTTTGGCAGATGCCGCGATCGATGGAGATGG
CGCTCAGCAGTTATTCGATGTATATAACGCCACGCTCAGTATATCAAACG
TCAAGTTGGAAAATGGCAATGGTACGTATGGCGGGGCCATATTCGGGCGC
TACGCTGATGTGAGATGTACCGGCTGCAGATTTTTTGGCAATCGAGCCAG
CGAAGAGGGTGGCGCAATAAATGTGAAGGATTCCGATGTTTCCTTCACGG
GAGAAACGTATTGTCTCCAGAACAGTGCTGGCAGCGATGGAGGGTTCCTT
TCAGCGACGGAGAGCTCCGTCGTTGTCTTCGAAGGGACCTCGATTTTCCA
GGACAACATCTCGGACGGGCGAGGGGGGGTAATACATAGCTTTGAAGCCG
AAGAAATAAAATTTAATGGACGTAGCAGATTCTACAACAATGCGGCAGAT
CACTCAGGTGGTGCCATTTGGGCCCAAAGCACCTCCTTGAGCTTCTCCAG
GGAGGACAGCACGGTTGAGTTTGTCAACAATAGCGTGGCCACGCTATTCG
GCGGTGCCCTCGCTCTGGCCGGAAAAGAACCGTTAACGATGAACGTAAGT
GCCTTGTTCAAAAACAACTCGGCGTCGACGGGTGGGGCCGTGTACTTGAG
TGGGCGGGCAACTAATAGCATCATCAGCCGAACACGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1765:4026..9162+

>mRNA_H-paniculata_contig1765.4204.1 ID=mRNA_H-paniculata_contig1765.4204.1|Name=mRNA_H-paniculata_contig1765.4204.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1704bp|location=Sequence derived from alignment at H-paniculata_contig1765:4026..9162+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGTGCGAATCCAAGGTTCAGTTCCTCAGTGTTGCCACGATGGAGGA
TGCCACAGGTCTGGCAAATGCCCTCCTCAACTGCGAAGGCGCCGGATCGT
TTGTCGTGGAATGGACTGGGTGGGTCACAGTGGAGACCACGATACATGTG
GCGAACGGCACCACTCTCGAGATCGTCTCTTCTAACAGTTCAGATGACGT
GCGAATCCAAGGTTCAGTTCCTCAGTGTTGCCACGATGGAGGATGCCACA
GGTCTGGCAAATGCCCTCCTCAACTGCGAAGGCGCCGGATCGTTTGTCGT
GGAATGGACTGGGTGGGTCACAGTGGAGACCACGATACATGTGGCGAACG
GCACCACTCTCGAGATCGTCTCTTCTAACAGTTCAGATGCCGCGATCGAT
GGAGATGGCGCTCAGCAGTTATTCGATGTATATAACGCCACGCTCAGTAT
ATCAAACGTCAAGTTGGAAAATGGCAATGGTACGTATGGCGGGGCCATAT
TCGGGCGCTACGCTGATGTGAGATGTACCGGCTGCAGATTTTTTGGCAAT
CGAGCCAGCGAAGAGGGTGGCGCAATAAATGTGAAGGATTCCGATGTTTC
CTTCACGGGAGAAACGTATTGTCTCCAGAACAGTGCTGGCAGCGATGGAG
GGTTCCTTTCAGCGACGGAGAGCTCCGTCGTTGTCTTCGAAGGGACCTCG
ATTTTCCAGGACAACATCTCGGACGGGCGAGGGGGGGTAATACATAGCTT
TGAAGCCGAAGAAATAAAATTTAATGGACGTAGCAGATTCTACAACAATG
CGGCAGATCACTCAGGTGGTGCCATTTGGGCCCAAAGCACCTCCTTGAGC
TTCTCCAGGGAGGACAGCACGGTTGAGTTTGTCAACAATAGCGTGGCCAC
GCTATTCGGCGGTGCCCTCGCTCTGGCCGGAAAAGAACCGTTAACGATGA
ACGTAAGTGCCTTGTTCAAAAACAACTCGGCGTCGACGGGTGGGGCCGTG
TACTTGAGTGGGCGGGCAACTAATAGCATCATCAGCCGAACACGCATGCC
GCGATCGATGGAGATGGCGCTCAGCAGTTATTCGATGTATATAACGCCAC
GCTCAGTATATCAAACGTCAAGTTGGAAAATGGCAATGGTACGTATGGCG
GGGCCATATTCGGGCGCTACGCTGATGTGAGATGTACCGGCTGCAGATTT
TTTGGCAATCGAGCCAGCGAAGAGGGTGGCGCAATAAATGTGAAGGATTC
CGATGTTTCCTTCACGGGAGAAACGTATTGTCTCCAGAACAGTGCTGGCA
GCGATGGAGGGTTCCTTTCAGCGACGGAGAGCTCCGTCGTTGTCTTCGAA
GGGACCTCGATTTTCCAGGACAACATCTCGGACGGGCGAGGGGGGGTAAT
ACATAGCTTTGAAGCCGAAGAAATAAAATTTAATGGACGTAGCAGATTCT
ACAACAATGCGGCAGATCACTCAGGTGGTGCCATTTGGGCCCAAAGCACC
TCCTTGAGCTTCTCCAGGGAGGACAGCACGGTTGAGTTTGTCAACAATAG
CGTGGCCACGCTATTCGGCGGTGCCCTCGCTCTGGCCGGAAAAGAACCGT
TAACGATGAACGTAAGTGCCTTGTTCAAAAACAACTCGGCGTCGACGGGT
GGGGCCGTGTACTTGAGTGGGCGGGCAACTAATAGCATCATCAGCCGAAC
ACGC
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