mRNA_H-paniculata_contig17645.4202.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17645.4202.1
Unique NamemRNA_H-paniculata_contig17645.4202.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig17645.4202.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.730e-20
Identity = 52/138 (37.68%), Postives = 82/138 (59.42%), Query Frame = 1 
Query:   19 AASIRMLLATAAAKDGELRHFDAEQAFLKAIVGEEVY--------------IELNKAIYRLVQAVECWNIKFCDEMTAMGFEQSRADPCIFRKVVDGEVEIVVVVHVDDMLAHAKDRTTIEWFATQRGGRFKLKDLGD 390
            AASI+ ++A A  K  +L H+D +QA++ A + EE+Y              +++ +A+Y L Q+   W  +  D +   G+EQ R DPC+FRKVVDGEV  ++V++VDD+L  A +    E FA+    +F +KDLG+
Sbjct:   24 AASIKTVIAVATEKGKKLAHWDVKQAYIHAKLREEIYLSFPEGCSSMSGKVVKIERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGDREELFASLNK-KFPVKDLGE 160
[Close]
BLAST of mRNA_H-paniculata_contig17645.4202.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 3.050e-20
Identity = 52/138 (37.68%), Postives = 82/138 (59.42%), Query Frame = 1 
Query:   19 AASIRMLLATAAAKDGELRHFDAEQAFLKAIVGEEVY--------------IELNKAIYRLVQAVECWNIKFCDEMTAMGFEQSRADPCIFRKVVDGEVEIVVVVHVDDMLAHAKDRTTIEWFATQRGGRFKLKDLGD 390
            AAS++ ++A A  K  +L H+D +QA++ A + EE+Y              +++ +A+Y L Q+   W  +  D +   G+EQ R DPCIFRKVVDGEV  ++V++VDD+L  A +    + FA+    RF +KDLG+
Sbjct:  107 AASLKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIEYGYEQCRVDPCIFRKVVDGEVVGLIVINVDDILVAADEGEREDLFASLNN-RFPVKDLGE 243
[Close]
BLAST of mRNA_H-paniculata_contig17645.4202.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 6.790e-20
Identity = 53/146 (36.30%), Postives = 82/146 (56.16%), Query Frame = 1 
Query:    4 SPMSAAASIRMLLATAAAKDGELRHFDAEQAFLKAIVGEEVYIEL--------------NKAIYRLVQAVECWNIKFCDEMTAMGFEQSRADPCIFRKVVDGEVEIVVVVHVDDMLAHAKDRTTIEWFATQRGGRFKLKDLGDAEF 399
            SP  ++ASI+++LA A  K   L H+D +QA+  A + EE+++ L               +AIY L Q+   W     D +   GFEQ +ADPC+FRK+VD  V +++V++VDDML    D    E  A+ +  +F  K+LG+ E+
Sbjct:  248 SPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEIFLRLPAGCGDKSHKIGKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDMLVAESDEDCEELLASLKK-KFPTKNLGECEW 392
[Close]
BLAST of mRNA_H-paniculata_contig17645.4202.1 vs. uniprot
Match: A0A6H5JI74_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI74_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 9.880e-20
Identity = 52/138 (37.68%), Postives = 81/138 (58.70%), Query Frame = 1 
Query:   19 AASIRMLLATAAAKDGELRHFDAEQAFLKAIVGEEVY--------------IELNKAIYRLVQAVECWNIKFCDEMTAMGFEQSRADPCIFRKVVDGEVEIVVVVHVDDMLAHAKDRTTIEWFATQRGGRFKLKDLGD 390
            AASI+ ++A A  K  +L H+D +QA++ A + EE+Y              +++ +A+Y L Q    W  +  D +   G+EQ R DPC+FRKVVDGEV  ++V++VDD+L  A +    E FA+    +F +KDLG+
Sbjct:  591 AASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQGGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREELFASLNK-KFPVKDLGE 727
[Close]
BLAST of mRNA_H-paniculata_contig17645.4202.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.350e-19
Identity = 52/138 (37.68%), Postives = 82/138 (59.42%), Query Frame = 1 
Query:   19 AASIRMLLATAAAKDGELRHFDAEQAFLKAIVGEEVY--------------IELNKAIYRLVQAVECWNIKFCDEMTAMGFEQSRADPCIFRKVVDGEVEIVVVVHVDDMLAHAKDRTTIEWFATQRGGRFKLKDLGD 390
            AASI+ ++A A  K  +L H+D +QA++ A + EE+Y              +++ +A+Y L Q+   W  +  D +   G+EQ R DPC+FRKVVDGEV  ++V++VDD+L  A +    E FA+    +F +KDLG+
Sbjct:  450 AASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVMYVDDILVAADEGEREELFASLNK-KFPVKDLGE 586
[Close]
BLAST of mRNA_H-paniculata_contig17645.4202.1 vs. uniprot
Match: A0A6H5L9H4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9H4_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.650e-19
Identity = 52/138 (37.68%), Postives = 82/138 (59.42%), Query Frame = 1 
Query:   19 AASIRMLLATAAAKDGELRHFDAEQAFLKAIVGEEVY--------------IELNKAIYRLVQAVECWNIKFCDEMTAMGFEQSRADPCIFRKVVDGEVEIVVVVHVDDMLAHAKDRTTIEWFATQRGGRFKLKDLGD 390
            AASI+ ++A A  K  +L H+D +QAF+ A + EE+Y              +++ +A+Y L Q+   W  +  D +   G+EQ RADPC+FRK+VDGEV  ++V++VDD+L  A +    E FA+     F +K+LG+
Sbjct:  281 AASIKTVIAVATEKGKKLAHWDVKQAFIHAKLKEEIYLRFPEGCGSMFGKAVKVERALYGLKQSGREWGFEAADALIENGYEQCRADPCVFRKLVDGEVVGLIVIYVDDILVAADEGEREELFASFNKN-FPVKNLGE 417
[Close]
BLAST of mRNA_H-paniculata_contig17645.4202.1 vs. uniprot
Match: A0A6H5JTV6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTV6_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 1.850e-19
Identity = 53/146 (36.30%), Postives = 82/146 (56.16%), Query Frame = 1 
Query:    4 SPMSAAASIRMLLATAAAKDGELRHFDAEQAFLKAIVGEEVYIEL--------------NKAIYRLVQAVECWNIKFCDEMTAMGFEQSRADPCIFRKVVDGEVEIVVVVHVDDMLAHAKDRTTIEWFATQRGGRFKLKDLGDAEF 399
            SP  ++ASI+++LA A  K   L H+D +QA+  A + EEV+++L               +AIY L Q+   W     D +   GFEQ +ADPC+FRK+VD  V +++V++VDD+L    D    E  A+    +F  K+LG+ E+
Sbjct:  623 SPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNK-KFPTKNLGECEW 767
[Close]
BLAST of mRNA_H-paniculata_contig17645.4202.1 vs. uniprot
Match: A0A6H5JIS9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIS9_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 2.270e-19
Identity = 52/146 (35.62%), Postives = 80/146 (54.79%), Query Frame = 1 
Query:    4 SPMSAAASIRMLLATAAAKDGELRHFDAEQAFLKAIVGEEVYIEL--------------NKAIYRLVQAVECWNIKFCDEMTAMGFEQSRADPCIFRKVVDGEVEIVVVVHVDDMLAHAKDRTTIEWFATQRGGRFKLKDLGDAEF 399
            SP  ++ASI+++LA A  K   L H+D +QA+  A + EEV++ +               +AIY L Q+   W     D +   GFEQ +ADPC+FRK+VD  V +V+V++VDD+L    D    E  A+    +F  K+ G+ E+
Sbjct:   42 SPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLRIPAGYGDKSHKIVQAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMVIVIYVDDILVAGSDEDCEELLASLNK-KFPTKNRGEYEW 186
[Close]
BLAST of mRNA_H-paniculata_contig17645.4202.1 vs. uniprot
Match: A0A6H5JMA7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA7_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 2.650e-19
Identity = 50/138 (36.23%), Postives = 82/138 (59.42%), Query Frame = 1 
Query:   19 AASIRMLLATAAAKDGELRHFDAEQAFLKAIVGEEVY--------------IELNKAIYRLVQAVECWNIKFCDEMTAMGFEQSRADPCIFRKVVDGEVEIVVVVHVDDMLAHAKDRTTIEWFATQRGGRFKLKDLGD 390
            AASI+ ++  A+ K  +L H+D +QA++ A + E +Y              +++ +A+Y L Q+   W  +  D +   G+EQ R DPC+FRKVVDGEV  ++V++VDD+L  A +    E+FA+    +F +KDLG+
Sbjct:   70 AASIKTVITVASEKGKKLAHWDVKQAYIHAKLKEGLYLRFPEGCGSMSGKVVKVERALYGLKQSGHEWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVAADEGEREEFFASLNK-KFPVKDLGE 206
[Close]
BLAST of mRNA_H-paniculata_contig17645.4202.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 3.300e-19
Identity = 50/138 (36.23%), Postives = 82/138 (59.42%), Query Frame = 1 
Query:   19 AASIRMLLATAAAKDGELRHFDAEQAFLKAIVGEEVY--------------IELNKAIYRLVQAVECWNIKFCDEMTAMGFEQSRADPCIFRKVVDGEVEIVVVVHVDDMLAHAKDRTTIEWFATQRGGRFKLKDLGD 390
            AASI+ ++A A  K  +L H+D +QA++ A + EE+Y              +++ +A+Y L Q+   W  +  D +   G+EQ R DPC+FRKVVDGEV  ++V++VDD++  A +    E FA+    +F +KD+G+
Sbjct:  304 AASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDIIVAADEGEREELFASLNK-KFPVKDVGE 440
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17645.4202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXU1_9PHAE2.730e-2037.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUN0_9PHAE3.050e-2037.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JLS1_9PHAE6.790e-2036.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JI74_9PHAE9.880e-2037.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1I0_9PHAE1.350e-1937.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L9H4_9PHAE1.650e-1937.68Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JTV6_9PHAE1.850e-1936.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JIS9_9PHAE2.270e-1935.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JMA7_9PHAE2.650e-1936.23Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE3.300e-1936.23Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17645contigH-paniculata_contig17645:3363..3804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score89.7
Seed ortholog evalue1.1e-15
Seed eggNOG ortholog5111.M1VW57
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs21AV1@147550,38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelSordariomycetes
Best eggNOG OGNA|NA|NA
Exons2
Model size399
Cds size390
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17645.4202.1prot_H-paniculata_contig17645.4202.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17645 3363..3795 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929380.9931512-CDS-H-paniculata_contig17645:3362..36261622929380.9931512-CDS-H-paniculata_contig17645:3362..3626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17645 3363..3626 -
1691480838.6008618-CDS-H-paniculata_contig17645:3362..36261691480838.6008618-CDS-H-paniculata_contig17645:3362..3626Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17645 3363..3626 -
1622929381.0054483-CDS-H-paniculata_contig17645:3669..37951622929381.0054483-CDS-H-paniculata_contig17645:3669..3795Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17645 3670..3795 -
1691480838.6103437-CDS-H-paniculata_contig17645:3669..37951691480838.6103437-CDS-H-paniculata_contig17645:3669..3795Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17645 3670..3795 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929381.0160234-UTR-H-paniculata_contig17645:3795..38041622929381.0160234-UTR-H-paniculata_contig17645:3795..3804Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17645 3796..3804 -
1691480838.6188316-UTR-H-paniculata_contig17645:3795..38041691480838.6188316-UTR-H-paniculata_contig17645:3795..3804Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17645 3796..3804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17645.4202.1

>prot_H-paniculata_contig17645.4202.1 ID=prot_H-paniculata_contig17645.4202.1|Name=mRNA_H-paniculata_contig17645.4202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
MSAAASIRMLLATAAAKDGELRHFDAEQAFLKAIVGEEVYIELNKAIYRL
VQAVECWNIKFCDEMTAMGFEQSRADPCIFRKVVDGEVEIVVVVHVDDML
AHAKDRTTIEWFATQRGGRFKLKDLGDAEF
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mRNA from alignment at H-paniculata_contig17645:3363..3804-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17645.4202.1 ID=mRNA_H-paniculata_contig17645.4202.1|Name=mRNA_H-paniculata_contig17645.4202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=442bp|location=Sequence derived from alignment at H-paniculata_contig17645:3363..3804- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACTCACCAATGTCGGCGGCCGCGTCCATCCGGATGCTCTTGGCGACCGC
AGCGGCGAAGGACGGAGAGCTGCGACATTTCGACGCAGAACAGGCGTTTC
TGAAGGCGATCGTTGGCGAGGAGGTGTACATCGAGGTCCCCCGAAAGATT
CCAACATTTCCCGGAAGCAGTGGGTAAGCTGAACAAGGCAATCTACCGGC
TCGTTCAGGCGGTGGAATGCTGGAACATCAAATTCTGCGACGAAATGACA
GCAATGGGGTTCGAGCAGTCAAGGGCAGACCCGTGCATATTCAGGAAGGT
CGTCGACGGAGAGGTGGAAATAGTGGTAGTCGTGCACGTGGACGATATGC
TTGCCCACGCAAAGGACCGCACGACGATAGAGTGGTTCGCAACCCAGCGA
GGGGGAAGGTTCAAGCTGAAAGACTTGGGTGACGCCGAGTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig17645:3363..3804-

>mRNA_H-paniculata_contig17645.4202.1 ID=mRNA_H-paniculata_contig17645.4202.1|Name=mRNA_H-paniculata_contig17645.4202.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig17645:3363..3804- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGGCGGCCGCGTCCATCCGGATGCTCTTGGCGACCGCAGCGGCGAA
GGACGGAGAGCTGCGACATTTCGACGCAGAACAGGCGTTTCTGAAGGCGA
TCGTTGGCGAGGAGGTGTACATCGAGATGTCGGCGGCCGCGTCCATCCGG
ATGCTCTTGGCGACCGCAGCGGCGAAGGACGGAGAGCTGCGACATTTCGA
CGCAGAACAGGCGTTTCTGAAGGCGATCGTTGGCGAGGAGGTGTACATCG
AGCTGAACAAGGCAATCTACCGGCTCGTTCAGGCGGTGGAATGCTGGAAC
ATCAAATTCTGCGACGAAATGACAGCAATGGGGTTCGAGCAGTCAAGGGC
AGACCCGTGCATATTCAGGAAGGTCGTCGACGGAGAGGTGGAAATAGTGG
TAGTCGTGCACGTGGACGATATGCTTGCCCACGCAAAGGACCGCACGACG
ATAGAGTGGTTCGCAACCCAGCGAGGGGGAAGGTTCAAGCTGAAAGACTT
GGGTGACGCCGAGTTCCTGAACAAGGCAATCTACCGGCTCGTTCAGGCGG
TGGAATGCTGGAACATCAAATTCTGCGACGAAATGACAGCAATGGGGTTC
GAGCAGTCAAGGGCAGACCCGTGCATATTCAGGAAGGTCGTCGACGGAGA
GGTGGAAATAGTGGTAGTCGTGCACGTGGACGATATGCTTGCCCACGCAA
AGGACCGCACGACGATAGAGTGGTTCGCAACCCAGCGAGGGGGAAGGTTC
AAGCTGAAAGACTTGGGTGACGCCGAGTTC
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