mRNA_H-paniculata_contig17642.4201.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17642.4201.1
Unique NamemRNA_H-paniculata_contig17642.4201.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17642.4201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17642contigH-paniculata_contig17642:1483..2188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size707
Cds size381
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929380.940177-UTR-H-paniculata_contig17642:1482..18071622929380.940177-UTR-H-paniculata_contig17642:1482..1807Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17642 1483..1807 +
1691480838.5792913-UTR-H-paniculata_contig17642:1482..18071691480838.5792913-UTR-H-paniculata_contig17642:1482..1807Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17642 1483..1807 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929380.9524305-CDS-H-paniculata_contig17642:1807..21881622929380.9524305-CDS-H-paniculata_contig17642:1807..2188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17642 1808..2188 +
1691480838.5897574-CDS-H-paniculata_contig17642:1807..21881691480838.5897574-CDS-H-paniculata_contig17642:1807..2188Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17642 1808..2188 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17642.4201.1prot_H-paniculata_contig17642.4201.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17642 1808..2188 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17642.4201.1

>prot_H-paniculata_contig17642.4201.1 ID=prot_H-paniculata_contig17642.4201.1|Name=mRNA_H-paniculata_contig17642.4201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
MASVDVFSTMNQTHERAGARGPTFHRVFKMDTTYTPTSHALRVSGNCDLC
IDKIIDYYDYLQELPSISRKNNKKQRSNAWVLKCIEPLLKGKSVVTAPST
RKAVLKYFPTTVGVNLTIYICSNNNAS
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mRNA from alignment at H-paniculata_contig17642:1483..2188+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17642.4201.1 ID=mRNA_H-paniculata_contig17642.4201.1|Name=mRNA_H-paniculata_contig17642.4201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=706bp|location=Sequence derived from alignment at H-paniculata_contig17642:1483..2188+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGTTTCCTGTATCGTCATATTTACCTCATGCTCGACGTTTCCTGACAA
TTGACGCCGACCATTCTATGTTTAGGTCGAGGAGCACTTTTTCTACCAAG
TTGTTTGATGTTTCCGGCTCAAACCTCGCCTTCGACATTGTATTCTTTTT
TTTCGCCTGGGTTTTCTCTGCACTGCACCAGTGGGCGTCAATTTCCTTGC
CCCATATGGGGACTTCAACAGGGAGATTACGACCACCTCACTAGTAGTAG
TAACCCGCGGCTACGCCCATGTAACCAGTAACAAGAAATGGCCCTCTCTC
TCTCTTTCTCTCTCTCTCTGCCTTCATGGCATCGGTCGACGTCTTCTCTA
CTATGAACCAAACACACGAGAGAGCCGGAGCAAGGGGTCCCACGTTTCAC
CGAGTTTTTAAGATGGACACCACATACACCCCCACATCCCACGCACTCCG
AGTTTCGGGAAATTGCGACCTGTGCATTGACAAGATCATCGATTACTATG
ATTATCTACAAGAACTCCCATCAATCTCCCGGAAAAACAACAAAAAACAA
CGATCAAACGCATGGGTACTGAAGTGCATAGAACCCTTGCTAAAAGGGAA
ATCTGTCGTAACTGCACCAAGTACGAGAAAAGCAGTTCTCAAATATTTCC
CTACGACAGTCGGAGTAAATCTCACTATATACATTTGCTCAAATAACAAC
GCCAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig17642:1483..2188+

>mRNA_H-paniculata_contig17642.4201.1 ID=mRNA_H-paniculata_contig17642.4201.1|Name=mRNA_H-paniculata_contig17642.4201.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig17642:1483..2188+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCATCGGTCGACGTCTTCTCTACTATGAACCAAACACACGAGAGAGC
CGGAGCAAGGGGTCCCACGTTTCACCGAGTTTTTAAGATGGACACCACAT
ACACCCCCACATCCCACGCACTCCGAGTTTCGGGAAATTGCGACCTGTGC
ATTGACAAGATCATCGATTACTATGATTATCTACAAGAACTCCCATCAAT
CTCCCGGAAAAACAACAAAAAACAACGATCAAACGCATGGGTACTGAAGT
GCATAGAACCCTTGCTAAAAGGGAAATCTGTCGTAACTGCACCAAGTACG
AGAAAAGCAGTTCTCAAATATTTCCCTACGACAGTCGGAGTAAATCTCAC
TATATACATTTGCTCAAATAACAACGCCAGCATGGCATCGGTCGACGTCT
TCTCTACTATGAACCAAACACACGAGAGAGCCGGAGCAAGGGGTCCCACG
TTTCACCGAGTTTTTAAGATGGACACCACATACACCCCCACATCCCACGC
ACTCCGAGTTTCGGGAAATTGCGACCTGTGCATTGACAAGATCATCGATT
ACTATGATTATCTACAAGAACTCCCATCAATCTCCCGGAAAAACAACAAA
AAACAACGATCAAACGCATGGGTACTGAAGTGCATAGAACCCTTGCTAAA
AGGGAAATCTGTCGTAACTGCACCAAGTACGAGAAAAGCAGTTCTCAAAT
ATTTCCCTACGACAGTCGGAGTAAATCTCACTATATACATTTGCTCAAAT
AACAACGCCAGC
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