mRNA_H-paniculata_contig1764.4199.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1764.4199.1
Unique NamemRNA_H-paniculata_contig1764.4199.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1764.4199.1 vs. uniprot
Match: D8LQJ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQJ1_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 3.910e-21
Identity = 48/92 (52.17%), Postives = 71/92 (77.17%), Query Frame = 3 
Query:  615 AILAESVKMKGMLVCGRAMRMDGIFEGELFSTGSITIGPTGSVIGNLKGLDFLRVEGEVVGDILCNTVMVLNGGKVLGDITAVNLTVGPKTT 890
            A++A ++ + G+L CGR++RM+G F+G+L STG + + PTG + G+LKGL FL VEG+V GD++C  VMV+N GKV GDI++  +TVGP+ T
Sbjct:  118 AVVALTMSLTGLLECGRSLRMEGTFQGDLISTGRVVVAPTGKIKGHLKGLKFLLVEGQVDGDVVCEEVMVVNEGKVFGDISSARVTVGPQDT 209
[Close]
BLAST of mRNA_H-paniculata_contig1764.4199.1 vs. uniprot
Match: A0A6H5KXR1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXR1_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.650e-17
Identity = 46/105 (43.81%), Postives = 69/105 (65.71%), Query Frame = 3 
Query:  606 EPVAILAESVKMKGMLVCGRAMRMDGIFEGELFSTGSITIGPTGSVIGNLKGLDFLRVEGEVVGDILCNTVMVLNGGKVLGDITAVNLTVGPKTTVRGMLNVVDD 920
            EP A++A ++ +KGML CGR++RM+G F+G+L STG + + PTG                    D++C+ VMV+N GKV GDI++  +TVGP++T+RG L VV+D
Sbjct:  703 EPEAVVARTMSLKGMLECGRSLRMEGTFQGDLISTGRVVVAPTGXXXXXXXXXXXXXXXXXXXXDVVCDEVMVVNEGKVFGDISSARVTVGPQSTIRGRLTVVED 807
[Close]
BLAST of mRNA_H-paniculata_contig1764.4199.1 vs. uniprot
Match: D7G0L1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0L1_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 1.310e-14
Identity = 43/104 (41.35%), Postives = 70/104 (67.31%), Query Frame = 3 
Query:  600 EEEPVAILAESVKMKGMLVCGRAMRMDGIFEGELFST-GSITIGPTGSVIGNLKGLDFLRVEGEVVGDILCNTVMVLNGGKVLGDITAVNLTVGPKTTVRGMLN 908
            E++P +++AE+++MKG L   R +R+DG FEGEL +  GS+ +GP G V+G+LK +  + VEG V G++  N V + N G +LGD+  + LT+ P  ++R  +N
Sbjct:   88 EQKPESMVAETLRMKGELEFTRLLRVDGRFEGELITDKGSLVVGPKGEVVGDLKNMQEVYVEGIVRGNVFANDVKIKNAGMLLGDVQCMCLTLDPTASIRVSIN 191
[Close]
BLAST of mRNA_H-paniculata_contig1764.4199.1 vs. uniprot
Match: A0A7C1V0I5_9CHLR (Polymer-forming cytoskeletal protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C1V0I5_9CHLR)

HSP 1 Score: 58.5 bits (140), Expect = 4.790e-6
Identity = 32/102 (31.37%), Postives = 58/102 (56.86%), Query Frame = 3 
Query:  594 VPEEEPVAILAESVKMKGMLVCGRAMRMDGIFEGELFSTGSITIGPTGSVIGNLKGLDFLRVEGEVVGDILCNTVMVLNGGKVLGDITAVNLTVGPKTTVRG 899
            VP      ++  +  ++G +V    +R+DGIFEG + +TG++ IG +  VI  +K  + + + G + G+I+ N V +L  G+V GD+T  +L +     +RG
Sbjct:   17 VPSARIETVIGPNAHVRGDIVSEGGVRIDGIFEGSIETTGNLVIGESAKVIAEVKANN-ISISGAIKGNIIGNRVEILETGRVWGDLTISSLLLNEGAYLRG 117
[Close]
BLAST of mRNA_H-paniculata_contig1764.4199.1 vs. uniprot
Match: A0A7C7W035_9CHLR (Polymer-forming cytoskeletal protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7C7W035_9CHLR)

HSP 1 Score: 57.8 bits (138), Expect = 6.820e-6
Identity = 34/109 (31.19%), Postives = 59/109 (54.13%), Query Frame = 3 
Query:  594 VPEEEPVAILAESVKMKGMLVCGRAMRMDGIFEGELFSTGSITIGPTGSVIGNLKGLDFLRVEGEVVGDILCNTVMVLNGGKVLGDITAVNLTVGPKTTVRGMLNVVDD 920
            VP      ++  +   +G +V    +R+DG+FEG + +TG++ IG +  VI ++K  + + V G V G+I  N V +L  G+V GD+T  +L +     +RG   +  D
Sbjct:    5 VPSARIETVIGPNAHFRGEIVSEGGIRVDGLFEGSIETTGNLVIGESAKVIADIKANN-VSVSGAVKGNITGNRVEILETGRVWGDLTINSLLLNEGAYLRGQTTMHAD 112
[Close]
BLAST of mRNA_H-paniculata_contig1764.4199.1 vs. uniprot
Match: A0A7V2VKP2_9CHLR (Polymer-forming cytoskeletal protein n=1 Tax=Thermoflexia bacterium TaxID=2420334 RepID=A0A7V2VKP2_9CHLR)

HSP 1 Score: 57.4 bits (137), Expect = 1.180e-5
Identity = 33/101 (32.67%), Postives = 56/101 (55.45%), Query Frame = 3 
Query:  618 ILAESVKMKGMLVCGRAMRMDGIFEGELFSTGSITIGPTGSVIGNLKGLDFLRVEGEVVGDILCNTVMVLNGGKVLGDITAVNLTVGPKTTVRGMLNVVDD 920
            ++  +   +G LV    +R+DGIFEG + +TG++ IG T  VI ++   + + + G V G+I  N V +L  G+V GD+T  +L +     +RG   +  D
Sbjct:   24 VIGPNAHFRGELVSEGGVRIDGIFEGTVNTTGNLVIGETAKVIADITANN-ISISGAVKGNISGNRVEILETGRVWGDLTVSSLLLNEGAYLRGQTTMHAD 123
[Close]
BLAST of mRNA_H-paniculata_contig1764.4199.1 vs. uniprot
Match: A0A661UAF5_9BACT (Polymer-forming cytoskeletal protein n=1 Tax=Candidatus Coatesbacteria bacterium TaxID=2250272 RepID=A0A661UAF5_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 2.220e-5
Identity = 40/124 (32.26%), Postives = 63/124 (50.81%), Query Frame = 3 
Query:  597 PEEEPVAILAESVKMKGMLVCGRAMRMDGIFEGELFSTGSITIGPTGSVIGNLKGLDFLRVEGEVVGDILCNTVMVLNG-GKVLGDITAVNLTVGPKTTVRGMLNV------VDDAGSIIDTAR 947
            P+ E  A LA+    KG L     +R+DGIF+G + S G++ +G TG + G +   + L   G V G I     + ++G GK+LG++   +L V P   V   L V      V   GS++ ++R
Sbjct:    5 PKTELNAYLAKGTNFKGELRFSGIVRLDGIFDGRIISDGTLVVGETGVLKGEIHVGELLS-SGVVEGTIKATRAIEVSGQGKLLGEVFTPSLNVAPGVLVEAQLRVGAGSGAVSSRGSVVGSSR 127
[Close]
BLAST of mRNA_H-paniculata_contig1764.4199.1 vs. uniprot
Match: A0A381DGS2_9PROT (Protein of uncharacterized function, DUF583 superfamily n=4 Tax=Campylobacter sputorum TaxID=206 RepID=A0A381DGS2_9PROT)

HSP 1 Score: 55.8 bits (133), Expect = 2.270e-5
Identity = 29/98 (29.59%), Postives = 51/98 (52.04%), Query Frame = 3 
Query:  618 ILAESVKMKGMLVCGRAMRMDGIFEGELFSTGSITIGPTGSVIGNLKGLDFLRVEGEVVGDILCNTVMVLNGGKVLGDITAVNLTVGPKTTVRGMLNV 911
            +++   K+KG       + +DGI EG++FS+  + IG  G + G LK    + V G  +GD  C ++ +L GG + G++ +    +  K T  G  +V
Sbjct:   17 VISSGAKIKGEFNFESMLHVDGILEGDIFSSSVVVIGNQGRIQGTLKAKKLI-VSGIFLGDADCGSIQILAGGSINGNVISEEFVIESKATFEGKSSV 113
[Close]
BLAST of mRNA_H-paniculata_contig1764.4199.1 vs. uniprot
Match: A0A7V4W7K6_9CHLR (Polymer-forming cytoskeletal protein n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A7V4W7K6_9CHLR)

HSP 1 Score: 55.5 bits (132), Expect = 3.710e-5
Identity = 31/93 (33.33%), Postives = 55/93 (59.14%), Query Frame = 3 
Query:  621 LAESVKMKGMLVCGRAMRMDGIFEGELFSTGSITIGPTGSVIGNLKGLDFLRVEGEVVGDILCNTVMVLNGGKVLGDITAVNLTVGPKTTVRG 899
            +AE+  + G + C   MR++G+  G +  TG++ IG   +V  +++  + + V+G V G+I    V +L+ G+VLGD+T V+L +     VRG
Sbjct:   17 IAENTSVSGEIKCDGNMRIEGLVTGSIECTGNVIIGERATVKADIRAHN-VSVQGTVEGNIDGERVEILSSGRVLGDVTVVDLLLDEGGVVRG 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1764.4199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LQJ1_ECTSI3.910e-2152.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXR1_9PHAE2.650e-1743.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0L1_ECTSI1.310e-1441.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7C1V0I5_9CHLR4.790e-631.37Polymer-forming cytoskeletal protein n=1 Tax=Chlor... [more]
A0A7C7W035_9CHLR6.820e-631.19Polymer-forming cytoskeletal protein n=1 Tax=Anaer... [more]
A0A7V2VKP2_9CHLR1.180e-532.67Polymer-forming cytoskeletal protein n=1 Tax=Therm... [more]
A0A661UAF5_9BACT2.220e-532.26Polymer-forming cytoskeletal protein n=1 Tax=Candi... [more]
A0A381DGS2_9PROT2.270e-529.59Protein of uncharacterized function, DUF583 superf... [more]
A0A7V4W7K6_9CHLR3.710e-533.33Polymer-forming cytoskeletal protein n=1 Tax=Anaer... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1764contigH-paniculata_contig1764:1772..11344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue3.6e-12
Seed eggNOG ortholog2880.D7FMX5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Polymer-forming cytoskeletal
EggNOG OGs2RXV0@2759,COG1664@1
Ec32 ortholog descriptionProtein of unknown function DUF583
Ec32 orthologEc-10_005860.1
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size4245
Cds size1290
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929380.7563972-UTR-H-paniculata_contig1764:1771..46911622929380.7563972-UTR-H-paniculata_contig1764:1771..4691Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1764 1772..4691 -
1691480838.4982266-UTR-H-paniculata_contig1764:1771..46911691480838.4982266-UTR-H-paniculata_contig1764:1771..4691Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1764 1772..4691 -
1622929380.829868-UTR-H-paniculata_contig1764:11309..113441622929380.829868-UTR-H-paniculata_contig1764:11309..11344Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1764 11310..11344 -
1691480838.5451782-UTR-H-paniculata_contig1764:11309..113441691480838.5451782-UTR-H-paniculata_contig1764:11309..11344Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1764 11310..11344 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929380.7704237-CDS-H-paniculata_contig1764:4691..51321622929380.7704237-CDS-H-paniculata_contig1764:4691..5132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1764 4692..5132 -
1691480838.5077293-CDS-H-paniculata_contig1764:4691..51321691480838.5077293-CDS-H-paniculata_contig1764:4691..5132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1764 4692..5132 -
1622929380.7815855-CDS-H-paniculata_contig1764:5624..57201622929380.7815855-CDS-H-paniculata_contig1764:5624..5720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1764 5625..5720 -
1691480838.5155668-CDS-H-paniculata_contig1764:5624..57201691480838.5155668-CDS-H-paniculata_contig1764:5624..5720Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1764 5625..5720 -
1622929380.7921944-CDS-H-paniculata_contig1764:6919..70691622929380.7921944-CDS-H-paniculata_contig1764:6919..7069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1764 6920..7069 -
1691480838.523309-CDS-H-paniculata_contig1764:6919..70691691480838.523309-CDS-H-paniculata_contig1764:6919..7069Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1764 6920..7069 -
1622929380.8058448-CDS-H-paniculata_contig1764:8165..85851622929380.8058448-CDS-H-paniculata_contig1764:8165..8585Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1764 8166..8585 -
1691480838.5304992-CDS-H-paniculata_contig1764:8165..85851691480838.5304992-CDS-H-paniculata_contig1764:8165..8585Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1764 8166..8585 -
1622929380.8174844-CDS-H-paniculata_contig1764:11126..113091622929380.8174844-CDS-H-paniculata_contig1764:11126..11309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1764 11127..11309 -
1691480838.537812-CDS-H-paniculata_contig1764:11126..113091691480838.537812-CDS-H-paniculata_contig1764:11126..11309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1764 11127..11309 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1764.4199.1prot_H-paniculata_contig1764.4199.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1764 4692..11309 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1764.4199.1

>prot_H-paniculata_contig1764.4199.1 ID=prot_H-paniculata_contig1764.4199.1|Name=mRNA_H-paniculata_contig1764.4199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=430bp
MDRSAAVVGNVSRQQKLGLGMNEDDESRSITRDSSQRGSSYRLSARRLSA
KNLRGYLSRWSSSQQAKGQQPDGSVHASFRVMGSTSSKSSSPSRGGIMKH
RKRSFTRRHSHESAVVPPPQAAVDQAQSFVGGAAKAYDPQELTRRKSSPE
PTRRGLAPEKEDSANSPEEKDESRESGDYGVEELEVVPEEEPVAILAESV
KMKGMLVCGRAMRMDGIFEGELFSTGSITIGPTGSVIGNLKGLDFLRVEG
EVVGDILCNTVMVLNGGKVLGDITAVNLTVGPKTTVRGMLNVVDDAGSII
DTARQQNASAAANSSKAEEEKADGESGRAHGSREVGDGSVEHGDAGNTTM
EEDSDEERLSMYQHASKDSVGTASETDAASDHDGSSDTLPSKAESSTMKM
ATSKGKLKERRVHVLREAYSSGGSGVDVM*
back to top

mRNA from alignment at H-paniculata_contig1764:1772..11344-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1764.4199.1 ID=mRNA_H-paniculata_contig1764.4199.1|Name=mRNA_H-paniculata_contig1764.4199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9573bp|location=Sequence derived from alignment at H-paniculata_contig1764:1772..11344- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TAGACGAGGTGCGGAGGGAAGGGCAAGGGGATGCTATGGATAGATCGGCG
GCCGTGGTCGGCAACGTTAGTCGGCAACAGAAGTTAGGATTAGGGATGAA
CGAGGATGATGAGAGCCGATCGATCACAAGGGATTCTTCGCAGAGGGGGT
CTTCGTACAGATTGAGTGCTAGGCGATTGTCGGCGAAGAACTTGCGTGGG
TATCTGTCTCGATGGTCGGTGAGTTGAGTTGGTACTGGTGGTTTGGTGTT
GCTTGGGTTGTTGGAAGCGACCGCGGTGGATAGGACGGTCGGGCGCGGAT
GTGCTTAGGCTTAGTGCTGATGTATGTCCGAGGATTCGGTCCTGCTGAAT
CTTTCGTTTGGTGCGACGGTATGTAGGTTATATTGTCCAACTCTGTTCTG
TGTAGCACCAAACACAACTAACCGAACCGAACCGTTGCTTGGTTTGAAAA
GTGGTTGAATATTGATTATAGAGTTGATGACTATGACGGACTTCGGTGTT
GTTGCGCGCATACTGAGTTTCGCTCTGTTGGCAGTCCTGAGCAGAGCGAT
TTCGCTGCACCACCAACACACAATACATGGCACAGTGGGACAGCACAGCT
GAAACTGCTGATGAAAAGGGATATGGCTTGCTGCTAAAGATACCAAATTG
TGTTATCGTTCAGTCTCACTTGTGTTCAAGAACCTCTTACCCTTGACTGC
TGTCGCCATCATATCCTATTTAGTTGATCTTCCTGCTGTTCCAGTCGCTG
GATCAACTTTGTTTCACACGTCGGAATAACTAATTCTTGAAAAGTGTATT
CGATTGTTGGCTCAAACAGTACAGAGAAGATCATACAGTGACAAGGGACA
AAGGGATCTTGTATCGCGAGCGATCTTGAAAACGGCCTAAATGAAATTTC
ACAGCGGGGACAGTACGAGGCACATCAAGTCTCCATTCCAGACTTTCGTT
GATTTGACTCCACCACCCTGTCTAGAATCTGGAACTCAACATCTAGGTGT
CACACACACCGCTGTATTTAGTTGGAATGTACAAGGCTGTCATCAATATA
CGGTCGTTTGAGACCAACAGATAATATTGTAACTGAACTGGAGACGGCCG
TACCACTACCGTCCAAGTGTCCACATATTCATACTGAAGACAACGACATT
GGAGTTTGCTATGCATGGCAACACCAACCTGACTTTACGGTACTGTGAGC
ACGAATCTTTGAAGTTGGAACGATGTGTCCTCCCTCTAGCGGTCACCCCA
ACTCCTATATCCCTACCGGTTTGTAGTGTATCTATTTCGAAATTTCGGCT
CGAGACATTCCATGTACATCTGTCATCGTTCATCAGTACCTCCTCAATTA
CTCAAACTTTTGTTGAGGTGCACAAGTATCTCGTATCTTCATCGTCCGGT
TGTGCGTGTACCCTCCCACTCCATCGTAAAAAACGGCATTACGCGCATCG
TGGAGATTGGCGAGTGCCAGCATGTTTGACCTCAGTACTACAAAGATAAA
GTATTGCGGAACACATTTTTTTTCATGTATGATGATTAAGCTCTGATTAG
AGCTCGGGTTGATTCCTGCCACAACCCCAGTTTTACCGTTCAACACAGAG
TACACGATATCCATTTGCCAAGATGGAGTTTGCTCCCCCCCGTTCTCTCT
CCCTCTCCCTTTCCTTCCCCCTCTTCCGCTCTGTGCGTGTGCGTGTGCGT
GCTCCGTGAAAAGCGCTCGGCAATCGCAGGTGAACTGTCGACAACACATT
TTCCATGACACTCACTTCTGTCACATCAACTGCATGAAGAAATCACATAT
GTGAGGTGCACCACAAAAAATATGAAGTGGCGAGACAATTGGTCAACCCC
ACTTCAGTTCAAACTTCTTACTGGGGAAATTTTCGGATCAATAACCTGAT
CGCTACCGTCGTTGTTCCGTGATTGATGAAAAAAACATCACATGGGACAA
TCGAATGAGGTACAAAACTACAGCGCACAGCACAGTACCGAAGACAAAGA
ACCAACTGTGAGGAGGTGGCTCACGACGAAGCAGATGTGAGAAGATGCTG
CAGTCAGCACGTGTGATAACATGTCCTCCATAGTGTAATTTGTTTGCGCT
GGAAGGTCTGATGAGGAGGTCAGCTCCGCCATTTTAAGGTCGTTGTCGGG
CAGGCCTGGCTCCAACCTTGGGTTTTTCCAATTTATTGTGCATGTGCACA
TCTATGTAATAACACTACTGTACTCTTCGATGTTTTATTCTTTTCTGCAC
AAGTCAGTACACCTGCTACTCTTGTGCATCCTAATGTGACCACATTGGAC
ACATCATCTGTACGTTAGCCGACAGCACAAAATTAGCCTCTATACTAACC
AAAATATTTGTCTTGAGAATGACTTGATTACAATGAACTCAGTCGATATC
GACCATCTGCTGCTTTCGTATTTTATTCTTCTCGGCAGAATTCAATTTTA
CCTCTTGTATTGTGATCACAATCGCAGTATACGTGTGTGCAGACAGTCCA
GTAACCAGAATCTCCCTACCTATATTATTTTCCAGTGTTTTCGGGCGAAC
ATCTGTATGCAAAGCTATCTATTCTTTCCAAGGCACAAACCGGAAGCGCT
TTGCGACCACAACGACAACCATCCCCTCCAGGCCTCTCATTTCTTCTCTC
CCGCCCTGTCTTATCTCTCTGTCTATCTTGTATCTGCGTGGTGGTGGTGG
CGCTGCGATTTGATCACGACCACGCTGGCCAACGCACGATGATGTTCAAC
AAAAAAAAGTCGTCTCAGCAGGCGAAAGGACAACAGCCGGACGGTTCGGT
GCACGCTTCTTTTCGTGTGATGGGATCGACCTCTAGCAAGTCCTCCTCAC
CATCTAGGGGTGGGATCATGAAGCATCGGAAGAGGTCATTCACAAGGCGT
CATTCGCATGAGAGCGCGGTTGTGCCCCCTCCTCAGGCAGCCGTTGACCA
GGCTCAATCTTTCGTAGGGGGAGCAGCGAAGGCATACGACCCGCAGGAGC
TGACTAGGCGAAAGTCCTCTCCAGAGCCCACGAGGCGCGGGCTGGCCCCA
GAAAAGGAAGACTCAGCTAATTCGCCAGAGGAGAAGGATGAGTCTCGAGA
GAGCGGTGACTATGGAGTGGAAGAGTTAGAGGTGGTCCCTGAGGAGGAGC
CTGTAGCTATCCTCGCGGAGTCTGTTAAGGTAATTGCGTAATTTTGTTCA
TTTCCCATGTGTGCACCTCTGCATCCCTAGAGCCCATGATAGTATGACAG
AGATATCTAGTCCGAGTAAATATATTGCGGTGACTACGTGCTTGTCTCTC
GTGAAGATTGGGGTGATGTTGTGTTGAATGTACTTTTCCCAGGCCTTTGG
TGTTGATTGTCGCAAAAGTCTCGGGGAGAAAGTGGTGTCAGTTTTGTGTA
GGTGACGTGATGTACCTGTTGATTCGACCAGATATGCTAGCGGACCGTAC
ATGTCTTCCGCTATACATGTAAACGCAGAACAATGGTATCCGACGACGGT
TTTTGGAAGAGAAGAAGTGCCTAATGAATGCATTTTGTTCCGATACAGCA
TGTGCATGTGACAGCTTGCGAAGAACATGTAGGTATCAAACTCTCCGCTC
AGGGGCTGTCTTCGATCAGGAATGACTTCACAGTACAAATGGTATCATGC
AAAGTCGCCTTCGACAAGAAATTTGGAGAAAATTCTCTAGCCGGGGGGGC
GTGCACTAGCTAGGTTTGCGATGGCTTGCTCTATCGCTTATGCTCCCGGC
GCGAACTGAACCGAAAGGGACAATCGAATACGGAATAAATACACATCGTT
GGTGTAATTTGTAACCATAATAGAACATGGATGCAATATAACCCGTCCTT
CACATGAAAAAACGCCAGTGACGCGCGCAAATACTTTTTTCCACGTGGCT
ATGCCCTTCGGTTTTCGTGAGAAACCATCCCTAGCTGAGCCGTACATCTG
AGCCAGAGTACACCCTACTGTGTATATGGTCGAATACGATATGCCCTTCC
TAAAGAAATAATTTACAAAGCCATCAAAATATTTCATATACTGATGATGG
GTTTTCTTACGGCCCTTTTTATGTGCGCCGGTTCCTGGCTTTTTCCCTGG
AAACGGTCACGATCACTTAGCGTGCACGTTTCAGTTGTCGTGAGAGCCGT
CCATAGCAACGAAATGTCTTCATTGGGGTGTGCTTTGTCAGCGAAATGTG
AGCGAAGTGCTCAAATCCTTAGCAATGCTCATTAGAAGGTTGGTATTGTG
ACTACTGGTTTTATTTTTTTCTCAGATGAAGGGGATGCTTGTGTGCGGGC
GTGCCATGAGGATGGATGGCATATTTGAGGGGGAACTTTTCTCGACTGGC
AGCATCACTATTGGGCCGACGGGCTCAGTGATCGGCAACTTGAAGGGGCT
TGACTTCTTGCGCGTGGAAGGGGAGGTAAGAAGGAAGGCAAGACTAGTGG
CATTGGGAAGGAGGTCTCTCTACGTGATGGTTCTGGAGAAATCATTTTGT
GCATATTCGTTGGATATGACTAGAGTAGTACCATTCTACTTCCGAAAGAC
GTTTGGCGGCTAATTTGTCGTCAACCACTCACGGATTACCTGAATCTGCT
GAAAAGTTCATCGCAAATTTGTGGTGGAGAGGAAGAATTACCTGTGTCAA
ATGAAGCACACATTTATAGATGCACTTTTCGATAAACCTTGAGTATTGCA
GTTCGCGTTTGGCAGAGGACATTAAAAAAAAATCATCTTATATATATGAT
TCCTTACCTTCTCAGGTACGAACTGCGTGTTGACATTGTTCTCAGCACCT
GCTTGATCAGATCTTGCATTAGTCATGTTGAAATTTTCGACCGATGATGC
CATTTGTACGATGGATACAGCTGACAGGCAACCAACTCTACTCTAGTTGG
TATGTACAGCATTCTTCAGTCAAAAGTTCTTATACAGAAGTTACCGAGGT
ACTGAAGTGGTATACTCCGATTTAGTCATCTTCGCTTTGTTGCTTGAGTA
AATATGTGCGCAGATGCGATGAAGCTGATGTCCAGTAGGGGAGAGATTGA
TGAAGAGGTTTATTGGTCATTTCATGGTTTGTATCATGTTTTCCATGGGT
GGGCTTCAGCAGTCAACCATGCTGAATGTCACAGCACCCGGTCGTACGAG
TTCTCTCTTCAGTGGCGATCAAAACGAAAAATTATTCCATAATATAACGA
GAGGAAGGCTGAGGCAAAAACCTCTATCCGGTGCTTCCATACTATGGTAT
TTTCACCAAAGCATTTCTACATTTCCTTCAACAGAGCAGAGTTATTTGTT
CCTCTACGGGGTAGGTGCCACCCCGGTTCGGCTGACCGAAGTGGGTAGTG
TGGGGGTTTCACCCACTGAACAACCTCTGACTAGACTTCCAGTCGTGCTC
AGTTCACGAGCTACCCTACCCGTTCGGGCGTAGGTCCGTGGATCACCCCT
GATGATGCTCCGACGCTTTCTGAGCGAGTTTTTCTCGACAAGAAAGACCT
TGAACTCCTTTGACCGAATACTCATTGTTGAAAAAGAGGAGAGGGGTACA
TCTCGTGGACTGAAGTCGAAGTATATCGGCTTTTGGTCCTTCCGGCGGTA
TGTGCCCAAACTTGTGCAATGCAGGTGGTTGGTGATATCTTGTGCAACAC
GGTGATGGTACTAAACGGAGGCAAGGTGCTTGGCGATATCACGGCAGTGA
ACCTCACCGTCGGTCCCAAGGTTGGTGCTATACTTGTGTGTCGAATGGCT
GAGATAACGCCTCCATTCTATTTCATATTATAGGTTGTAGATGGATTCAA
GTATTCTTTTTTTCTTGGAGAAATCTTTCTTGCCTACGATTACTCATGGA
TGACACATTGCGCACGTGATCTTTTCCCCCACGTAGTGATGAGTGTGGAA
TGAACCACGACTCGTTAATGGTGAAGCGTTTGCAGCGGCATAATGGCATA
CCCTCCCATGTAGCTTGTCAGTACACTGCAGCCCATACATGCACCGATTA
AAGCTGAGGGCATTTTCAGGAAAATGCAAAATATTGCCATTGCTCAGCTC
CTTGGCGAGTGTAAGTAACCAGGAAACGTCATCCACATCAAGTCAGCCAT
TTTCCACACTTCATTCGCCCCGACTGAAGAATTGTCACCGGAACTACGTT
CATATTCATACCTTGAAGTTAAACCATCAACCCTCGGCTTGATCATATTT
CGATTCCTTTAGACAACTGTTCGGGGGATGCTGAATGTGGTGGACGATGC
GGGTTCTATCATCGATACGGCAAGACAACAAAACGCTTCTGCAGCGGCTA
ATTCTTCGAAGGCTGAAGAGGAGAAGGCCGATGGAGAATCGGGAAGGGCT
CATGGTTCTCGGGAAGTTGGGGATGGATCAGTGGAGCATGGTGATGCAGG
CAACACAACAATGGAGGAAGATTCTGACGAAGAGCGGTTGTCCATGTATC
AGCATGCTTCCAAGGACTCCGTTGGAACAGCATCCGAAACGGATGCCGCG
TCGGACCATGACGGTTCATCGGATACTTTGCCCTCGAAAGCTGAATCATC
GACTATGAAGATGGCCACAAGCAAGGGTAAACTCAAGGAGAGGAGGGTTC
ACGTGTTGCGTGAAGCGTACAGTTCCGGGGGCTCAGGAGTCGATGTAATG
TAACGAAGTTTTATTGTTTGATTTTCCACCGATAAACAGCTCTTGGTCGA
CATGCTACGTCTACAGCTCCGCCACTAGTTAATATCTTGATATTTTCTCT
CGGGTGACATGTTGGGTTATAATCGATTACAAGTTTGTGCGGGAAAGGTC
CCGCAAGGTTTCCATGTAGTCATGATTCTTTCAGATGACGCAGCGATTGG
GTTGATCAAGACCTGCTTGCCTTGTTCTGGAGATGCCGACTGTAAAATGG
CATTTCCGATGGTGTCAGGAATCGAGTGTGGAAGACGTGCACGAAATTTT
ATTTCGTGACGTTTTGTTTGGGGTAGTTTCAAATGGGTGAATGGCTGCAG
GTAACGTTGTGCCGTGGAGGCCCGGCGTGGATATACATAGTTGGAATCTT
TTTCATAGCCCGAAGTTGCGTTTGCTATTGAGTCATGTTTTGCAACGTCC
GAACCCGTTTGCGTCTTGACATTGCCGCTGGGGCTCGGGTGAGTGTCTTT
TTTCTCCTAAAGGAGTGTTACTTCAGGTATTTTCAGCATCGTTTCGTCCA
GGTCCCTCTTGAGTAATCTTATGTATGGGATTCCCCAATAATATATGTTA
CACTCGATGGTTCACCAATGACCTTGCATTTTTGTACTGTATGAACTTGG
TGCTGTCGTGATGATATTTTTAGTGTTGTGGAATAGTGTTGCTTTGTGGT
CTGGAGGGACAGGCTTGTTGGGGTGGAATTCTTCAGCCCAATGGTGCTAT
AGTATTCGCGAGGAGAACCTTGAGGTAGGTGTCTGGAAGTTGATCGAAAT
TAGGGGGTGTTGGTGTTTAGTGTCCATATGTTGGCCATTTTTTGTTTTCA
TGTTGCAATTGTGTATTTGTCGTTCACGTTGCGCTGTATGGGTGCATGTC
GAGATTGAACAACCACAACGTCTCTCCCCCCTACCCTCCGTCACGGGCAC
CTGATCATCTTGGGTTCTGTATACCGAAGTAATCCGCTCCCAAATGAAGG
TTTTGTCGTCCAGCTCTTGTATTTTCACGAGCTTTTGTGCATTTTCGACA
GCGTGGTTTTTGCAAATATTTGCGGGGCGCAGCATACGGTGGGCCATCAC
GTCCGAATCCCATAATGGGTAAAATGATGGGTAGCGTGGTGCGAATTTAT
TTGGTTTGGACATTTTTTTTTTTCATCGTACGTGTTTTTTCTTGCGGTAC
GTTTCAAGTGTCCATGCGGCATACGCATGTAAAACTAGTATAAAGCCGTA
CAGCAAACAACCCTGAACTCTTGCGTTTATTAAATGCCCTAATGAATATT
CCATTTTGATGCTGACGTTGCATTTCCCGAGTTTCGTTCCCTGGTATGAT
GGAATTCGTAGGTAGAGGGCATAGTGTATGAGGAATGTGTGTTCCGCCCC
CGAATCTGGCCAGTTACCGTAAGGGTTGTGCGTACTCCATGCCAAAAAGA
ATTGGCGAAAACCTTTCCGGTGCATCTGGAGATTTTTACCGCATTTGATG
TGGTCTGTTTTGTTGTGGCGATTCCTGGTGGGGGTCGATGCTGTCACGAG
AGAAGTATATGTTGGGTAAGAGTCAATGATTTGAAGAGCGGGACGGTGGA
AGGTGTTACTCGATGAACACTCTGACTTCGTGCATATTCGTCCACAGGTA
GGAGTACACTAGTACATCATGCCATACAGTAGTAGTTAACCCGTGGCATT
CACCAAGATTAGGTTAAAGGAGACGCCCTTGGCTGTAGGAGCAAGCTGAT
GAGAGCTCAATGGTGTTTTGGCCGGTGCACACACATCTTCCCAAAAATTA
AATGAACAACTAAAAATAGAAGGAAAGTCGGTGGGTGCGAATGATATCAT
GAGCACCATGTTTTAATTCATTTGTGCCGGTAGTTTTTCTTGGAGTACTG
TACATGGCAATTTTTTTAAAGAAACTGCCGAAAATATTATTGTACTCGGT
CGATTTGCATGATAGATGCTGTAGGAACCATGGTTTCCCCTTATTCTTGT
AGTGTGTTGCGTGATTACGTGTCGTGGTTGATCCATGTATTTTTCATGTC
CCCTCGATTTTGTTTTGCTCCCTGGTCGCAAGTTTCAAAGCATGTGTCCT
CTGTTCGATTGTATTCGCACATATCAGATCGTGGCTCTTGTGCGGTGGAG
GTACTAAGTCATGCAATGTTGTCTGACTACGCCCTGACGTGTCATCACGT
TGTTTTTTTCGTTGGCGATTACTTGCACATGTATATTACAGGGGTGTAAT
TCGACTGCTGGGACCGGGAACAGTGACCAAATATTTGTACCATCGATCAC
CAATTGACGGTAGTACATCAACGCGCACATCGAGAAGTGTGAGCTTTGGG
CTGAAACGTTTTGATGACTTGAGTCATCCGTCTGTAGTTTTAATATGCAT
ATCTATAAGTGATGGGACATCAGATAGATGGAGATTTTAACGTTGAACAG
TTCTTGAGTCGCATAACTTCCCCAGTCGGGTAACTATTTTATGAAGGGGA
GCTGTGCACTGCATATTATTTAATATATCATACAAAAAAACTGTAAACGG
TAGAAATGAGCATCTCGGTAGGCGCTCAAGTGTGTGTCATGACTTTTTCA
AGAAATATCAACAACTCTCGGGTATTCAACCCTAAGTCAGGTGTATCTTC
GTGTAAGTATTCGGTCGTGCTTCCCATGGATGGAGGTGAGCTACGGTAAG
TTCGTAGGACAGCGGTTACTCGCAAGGGACGCTATTTACCCCCCCCTTCG
TTTTCAAGCATGTATCTGTCGGAAAACGTAGAGGTTTTGCTATACTGCTG
ACACCTCAGTGCCTAGCAGGTAAATCTTAGTCGCACGAGTTATTGGGGGT
GGTGCTGAGTACAGATGCCTGGAGGAGGAAACGTCGCACCGCCGTCTGTG
CCTGCTAAATAACGAAGATTCGT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1764:1772..11344-

>mRNA_H-paniculata_contig1764.4199.1 ID=mRNA_H-paniculata_contig1764.4199.1|Name=mRNA_H-paniculata_contig1764.4199.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2580bp|location=Sequence derived from alignment at H-paniculata_contig1764:1772..11344- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATAGATCGGCGGCCGTGGTCGGCAACGTTAGTCGGCAACAGAAGTT
AGGATTAGGGATGAACGAGGATGATGAGAGCCGATCGATCACAAGGGATT
CTTCGCAGAGGGGGTCTTCGTACAGATTGAGTGCTAGGCGATTGTCGGCG
AAGAACTTGCGTGGGTATCTGTCTCGATGGTCGATGGATAGATCGGCGGC
CGTGGTCGGCAACGTTAGTCGGCAACAGAAGTTAGGATTAGGGATGAACG
AGGATGATGAGAGCCGATCGATCACAAGGGATTCTTCGCAGAGGGGGTCT
TCGTACAGATTGAGTGCTAGGCGATTGTCGGCGAAGAACTTGCGTGGGTA
TCTGTCTCGATGGTCGTCGTCTCAGCAGGCGAAAGGACAACAGCCGGACG
GTTCGGTGCACGCTTCTTTTCGTGTGATGGGATCGACCTCTAGCAAGTCC
TCCTCACCATCTAGGGGTGGGATCATGAAGCATCGGAAGAGGTCATTCAC
AAGGCGTCATTCGCATGAGAGCGCGGTTGTGCCCCCTCCTCAGGCAGCCG
TTGACCAGGCTCAATCTTTCGTAGGGGGAGCAGCGAAGGCATACGACCCG
CAGGAGCTGACTAGGCGAAAGTCCTCTCCAGAGCCCACGAGGCGCGGGCT
GGCCCCAGAAAAGGAAGACTCAGCTAATTCGCCAGAGGAGAAGGATGAGT
CTCGAGAGAGCGGTGACTATGGAGTGGAAGAGTTAGAGGTGGTCCCTGAG
GAGGAGCCTGTAGCTATCCTCGCGGAGTCTGTTAAGTCGTCTCAGCAGGC
GAAAGGACAACAGCCGGACGGTTCGGTGCACGCTTCTTTTCGTGTGATGG
GATCGACCTCTAGCAAGTCCTCCTCACCATCTAGGGGTGGGATCATGAAG
CATCGGAAGAGGTCATTCACAAGGCGTCATTCGCATGAGAGCGCGGTTGT
GCCCCCTCCTCAGGCAGCCGTTGACCAGGCTCAATCTTTCGTAGGGGGAG
CAGCGAAGGCATACGACCCGCAGGAGCTGACTAGGCGAAAGTCCTCTCCA
GAGCCCACGAGGCGCGGGCTGGCCCCAGAAAAGGAAGACTCAGCTAATTC
GCCAGAGGAGAAGGATGAGTCTCGAGAGAGCGGTGACTATGGAGTGGAAG
AGTTAGAGGTGGTCCCTGAGGAGGAGCCTGTAGCTATCCTCGCGGAGTCT
GTTAAGATGAAGGGGATGCTTGTGTGCGGGCGTGCCATGAGGATGGATGG
CATATTTGAGGGGGAACTTTTCTCGACTGGCAGCATCACTATTGGGCCGA
CGGGCTCAGTGATCGGCAACTTGAAGGGGCTTGACTTCTTGCGCGTGGAA
GGGGAGATGAAGGGGATGCTTGTGTGCGGGCGTGCCATGAGGATGGATGG
CATATTTGAGGGGGAACTTTTCTCGACTGGCAGCATCACTATTGGGCCGA
CGGGCTCAGTGATCGGCAACTTGAAGGGGCTTGACTTCTTGCGCGTGGAA
GGGGAGGTGGTTGGTGATATCTTGTGCAACACGGTGATGGTACTAAACGG
AGGCAAGGTGCTTGGCGATATCACGGCAGTGAACCTCACCGTCGGTCCCA
AGGTGGTTGGTGATATCTTGTGCAACACGGTGATGGTACTAAACGGAGGC
AAGGTGCTTGGCGATATCACGGCAGTGAACCTCACCGTCGGTCCCAAGAC
AACTGTTCGGGGGATGCTGAATGTGGTGGACGATGCGGGTTCTATCATCG
ATACGGCAAGACAACAAAACGCTTCTGCAGCGGCTAATTCTTCGAAGGCT
GAAGAGGAGAAGGCCGATGGAGAATCGGGAAGGGCTCATGGTTCTCGGGA
AGTTGGGGATGGATCAGTGGAGCATGGTGATGCAGGCAACACAACAATGG
AGGAAGATTCTGACGAAGAGCGGTTGTCCATGTATCAGCATGCTTCCAAG
GACTCCGTTGGAACAGCATCCGAAACGGATGCCGCGTCGGACCATGACGG
TTCATCGGATACTTTGCCCTCGAAAGCTGAATCATCGACTATGAAGATGG
CCACAAGCAAGGGTAAACTCAAGGAGAGGAGGGTTCACGTGTTGCGTGAA
GCGTACAGTTCCGGGGGCTCAGGAGTCGATGTAATGTAAACAACTGTTCG
GGGGATGCTGAATGTGGTGGACGATGCGGGTTCTATCATCGATACGGCAA
GACAACAAAACGCTTCTGCAGCGGCTAATTCTTCGAAGGCTGAAGAGGAG
AAGGCCGATGGAGAATCGGGAAGGGCTCATGGTTCTCGGGAAGTTGGGGA
TGGATCAGTGGAGCATGGTGATGCAGGCAACACAACAATGGAGGAAGATT
CTGACGAAGAGCGGTTGTCCATGTATCAGCATGCTTCCAAGGACTCCGTT
GGAACAGCATCCGAAACGGATGCCGCGTCGGACCATGACGGTTCATCGGA
TACTTTGCCCTCGAAAGCTGAATCATCGACTATGAAGATGGCCACAAGCA
AGGGTAAACTCAAGGAGAGGAGGGTTCACGTGTTGCGTGAAGCGTACAGT
TCCGGGGGCTCAGGAGTCGATGTAATGTAA
back to top