mRNA_H-paniculata_contig17632.4196.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17632.4196.1
Unique NamemRNA_H-paniculata_contig17632.4196.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17632.4196.1 vs. uniprot
Match: A0A6H5KPH2_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPH2_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 4.250e-16
Identity = 66/150 (44.00%), Postives = 79/150 (52.67%), Query Frame = 1 
Query:    4 IASRRASVSVGSDWQGSP---------GLGRTVDSENSEAQFIMELAGSSEPPDSTAFRAWNRTRSVSAGSLEDA---------IRLRVTDPML---VGEENNEREKQGNLLRRTFTKARNIKRHDFPDDSVSPFLGDELSVHHNNYFAS 390
            +A R    S GS   GS          G+ R  DS  SE  F MEL+GS +          +R RS S GS+E A         I  R++DP L    G E +    + NLLR+TFT+ARN +  D PDDSVS FLGDELSVHHNNYF S
Sbjct:  118 LAGRGGGNSTGSGGYGSADDSEVFFHEGISRE-DSGWSELAFGMELSGSYDQH----HHHRSRLRSTSVGSVEKATTPLWTRGPINARLSDPTLGDGEGLEGDPTADRMNLLRKTFTQARNQRLRDVPDDSVSAFLGDELSVHHNNYFGS 262
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17632.4196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KPH2_9PHAE4.250e-1644.00Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17632contigH-paniculata_contig17632:1919..4261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size427
Cds size423
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17632.4196.1prot_H-paniculata_contig17632.4196.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17632 1919..4259 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929380.4034472-CDS-H-paniculata_contig17632:1918..20381622929380.4034472-CDS-H-paniculata_contig17632:1918..2038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17632 1919..2038 +
1691480838.4142509-CDS-H-paniculata_contig17632:1918..20381691480838.4142509-CDS-H-paniculata_contig17632:1918..2038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17632 1919..2038 +
1622929380.4163046-CDS-H-paniculata_contig17632:2907..30451622929380.4163046-CDS-H-paniculata_contig17632:2907..3045Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17632 2908..3045 +
1691480838.4232185-CDS-H-paniculata_contig17632:2907..30451691480838.4232185-CDS-H-paniculata_contig17632:2907..3045Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17632 2908..3045 +
1622929380.43086-CDS-H-paniculata_contig17632:4094..42591622929380.43086-CDS-H-paniculata_contig17632:4094..4259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17632 4095..4259 +
1691480838.4314704-CDS-H-paniculata_contig17632:4094..42591691480838.4314704-CDS-H-paniculata_contig17632:4094..4259Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17632 4095..4259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17632.4196.1

>prot_H-paniculata_contig17632.4196.1 ID=prot_H-paniculata_contig17632.4196.1|Name=mRNA_H-paniculata_contig17632.4196.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp
PIASRRASVSVGSDWQGSPGLGRTVDSENSEAQFIMELAGSSEPPDSTAF
RAWNRTRSVSAGSLEDAIRLRVTDPMLVGEENNEREKQGNLLRRTFTKAR
NIKRHDFPDDSVSPFLGDELSVHHNNYFASIFNNGGSGGGG
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mRNA from alignment at H-paniculata_contig17632:1919..4261+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17632.4196.1 ID=mRNA_H-paniculata_contig17632.4196.1|Name=mRNA_H-paniculata_contig17632.4196.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2343bp|location=Sequence derived from alignment at H-paniculata_contig17632:1919..4261+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCATCGCTTCTCGGCGTGCCTCGGTGTCGGTGGGGTCCGATTGGCAGGG
TAGCCCCGGGCTGGGTCGGACAGTGGACTCGGAGAACAGTGAGGCGCAGT
TCATCATGGAGCTTGCGGGAGTGAGTACTTGCGTCTGCTTCTACTATTGT
TGTTGTTGTTGTTGTTGTTGTTGATGTTTATGCTCATGTGGCGTTGGGGT
TTGTACTACGTTGGTTTGGTCACTGTGCCACAACGTCCACCACGCGGTCG
CATGTTTTTTTGTACCGCTGTAGTTGATGTATCGCTGCCTACTGTGTGGG
ACAAGACCTGCGTTTGATGCAGATGTACAAAAAACTTTTCACTTCTACAT
AAAACGACCGTTTTACCTTGTTGGGACAAAACGAGTGAAAACGTCGACGT
GAATTAAGTATTGAGTACTACCGCAGAAATCAATCCCTCACCCTGACGGA
GTGCTTTTGAGGGACCACTAAAGTTGTTAACCTATTCAGTCTTTTTCGCC
AAGGATTTGTGGTGCTGGTCAGACGCACATGTTCACAAAAATGTTCAATT
GTTTATTACCTCGGAAGCTAAAGCGCTTGCTTGGTAAATTTGCATGTCTA
CCCCCAAAATATAGTCCGACAGTGCTTCTATTAATCCTGCAGTAGTAGCT
TCATGGTGTTGCCATTCACCTACATATGACACAAGGCAGACGTCCACGTT
TACCGCGTAACTGCTGTTTAGTTGCTCATCGTCCCCCAAACACTCGCTTA
CAAATGCGGTATACACGGCCAGGTCTGTTTATGGACTGCATAGCTGCAGC
ATAAAATTTCGGAAGTACTAGGAAGTGAGGACTCCCAAGTTCGATATTGT
GTCAAGCGTTAACACTATGGGTCATGATACGCCTATGCACAGTACACACA
TACCCTCCCTGCCCCCCCCTCTCTTGCACCCTGCACGTGCCGCCGCCGCC
GCCGCCGCCGCCAACACACCAACCCGACGGCCTTCCCAGTCGTCCGAACC
ACCAGATTCGACGGCGTTCCGCGCGTGGAACAGGACGAGGTCGGTGTCGG
CGGGCTCCCTAGAGGACGCCATCCGCCTAAGAGTGACCGACCCTATGCTC
GTGGGGGAGGAAAACAATGAGAGAGAGGTGAGTACATGATGCTGTATTCC
TGCGGCTGCGGCCGGCACTGCCGCTGTGGTGTTGATAGCTTACAGTATGT
GGAGCGAAAAGCCTCTGGCAGCCGTCGGCGAGGAAGCGGGGGCAGGGACG
GAGATGGGTATCAGTAAAAACAACCTCGTCGAGGGAGGGGGGACGAATTC
AAGCATTGTGAGAGACCGATGGTATCGTTATATTGTGGGAGAAATGAACG
ATGTTGCTCAGACAGGCGCTGAATTTAGTCGTTCGTTGGTGAGTGATTTC
GAAGGTTGGTTTAAGCTCTTCAGTGACATGGATGACCACATCGTGTCATC
GATCGCACTATGTCCTGTTCGCTCTGTGAAGGGAAGCGGTGTCGGGGTCG
GCCAGTATGACGGTGAGGACTCGCGTGGGAAAAAACCTGGCGGTATTCCT
TTCGTGCGCTTCTTGTATAGTGCTTTCCCCACTTCTCTTTTTCAACCGTT
ACATCTAGCTGCCTGTAACAGAGAACTCTCCTCCTTCACAGAGAGTATGT
GCCGTGCTCTGTTTCTCTATTTGTACGCCTTTTACATGGCATTTTTCTAG
TCTGTTCCTTCTTTCGACCACCCACGCATTCGTGCTGTGGTTCTGCGAGA
AAGGTCTTGCCCGATAACTATTCCTTGTGTATGCGCTTGGTTTACTTAAA
AACGTGCACTGAAGAAATGTTCGTGTGGGCATGTGTCGATGAGTCGGATC
CAGTCCGGAGTATCTGTTGCATGGTGCTGAGGAGACGCAGATTCACGCGC
ATGCATGTTCTATTTGAGCCGCTTTTTCTTTCAGCGGTTCTTTGGTGCCG
GTAGAGGTGCAGGCCCAGGCCGAAACAAACAATTGATCTTCGGACAATAG
CCGCTCGTAGCTCGCTGTTCCCTACTCCCTGCTCCCCCGCCACGCCAAAT
CATTTTCGCGATGTGCCTCATCACTGAATGCGTTGCATCGCCAAGCTATT
GACTCAATCCATCCTACCCACTGATTTCCCTCTGCCCCCATCGCCTACGC
TGCCCCTGCCCTCGATAAACGCACAGAAACAGGGCAATCTACTCCGGCGG
ACGTTCACAAAGGCACGCAACATCAAGCGCCATGACTTCCCCGACGACAG
CGTGTCACCCTTCCTTGGTGATGAGCTCTCCGTTCACCACAACAACTACT
TCGCGTCGATTTTCAATAACGGTGGCAGTGGCGGCGGCGGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig17632:1919..4261+

>mRNA_H-paniculata_contig17632.4196.1 ID=mRNA_H-paniculata_contig17632.4196.1|Name=mRNA_H-paniculata_contig17632.4196.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig17632:1919..4261+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCATCGCTTCTCGGCGTGCCTCGGTGTCGGTGGGGTCCGATTGGCAGGG
TAGCCCCGGGCTGGGTCGGACAGTGGACTCGGAGAACAGTGAGGCGCAGT
TCATCATGGAGCTTGCGGGACCCATCGCTTCTCGGCGTGCCTCGGTGTCG
GTGGGGTCCGATTGGCAGGGTAGCCCCGGGCTGGGTCGGACAGTGGACTC
GGAGAACAGTGAGGCGCAGTTCATCATGGAGCTTGCGGGATCGTCCGAAC
CACCAGATTCGACGGCGTTCCGCGCGTGGAACAGGACGAGGTCGGTGTCG
GCGGGCTCCCTAGAGGACGCCATCCGCCTAAGAGTGACCGACCCTATGCT
CGTGGGGGAGGAAAACAATGAGAGAGAGTCGTCCGAACCACCAGATTCGA
CGGCGTTCCGCGCGTGGAACAGGACGAGGTCGGTGTCGGCGGGCTCCCTA
GAGGACGCCATCCGCCTAAGAGTGACCGACCCTATGCTCGTGGGGGAGGA
AAACAATGAGAGAGAGAAACAGGGCAATCTACTCCGGCGGACGTTCACAA
AGGCACGCAACATCAAGCGCCATGACTTCCCCGACGACAGCGTGTCACCC
TTCCTTGGTGATGAGCTCTCCGTTCACCACAACAACTACTTCGCGTCGAT
TTTCAATAACGGTGGCAGTGGCGGCGGCGGCAAACAGGGCAATCTACTCC
GGCGGACGTTCACAAAGGCACGCAACATCAAGCGCCATGACTTCCCCGAC
GACAGCGTGTCACCCTTCCTTGGTGATGAGCTCTCCGTTCACCACAACAA
CTACTTCGCGTCGATTTTCAATAACGGTGGCAGTGGCGGCGGCGGC
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