mRNA_H-paniculata_contig1762.4191.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1762.4191.1
Unique NamemRNA_H-paniculata_contig1762.4191.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1762.4191.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 4.010e-45
Identity = 92/259 (35.52%), Postives = 143/259 (55.21%), Query Frame = 2 
Query:   38 ILFEP-----RVPEKGATHTHCPCDDVDRVFISITARQEKHHLPFSSKCPMRHGPGIAPLGLVPCIFADGSEPANFNEIVSCMQEVMCPPNDERQQLVVFRDPRPAVVSTFFHLKRKALSTPDDTAIFSMTIDEYVLKMLPTLCQWLAVRYMLFETFLVKQSNVFWYDDARTDPLTWHKEFLASVGVHLPIEVVETATRAAVQLDFAFPIKQIDVHPGGDNSVN-RTYVDEISAETLSSFDDILRTWLPPVLLARLGVS 796
             +F+P     R    G + + CPC  VD+V I +++   KH LP    CP +H   + P     C   +G    N+ + V C+Q+  C   D+R Q+++ RDPR   VS+FFHLK      P    +   ++D +VL+MLPT+C ++ +RY++    L  ++  F YD++  DPL WH+ +L+SVG+  P  VV  AT  +++ ++ F  K +D HPGG  +   RT+ DEIS +     + I R WLPPVLL + G+ 
Sbjct:  169 FVFKPNRQHGRSSAGGPSASPCPCSTVDKVSIMVSSLF-KHDLPVPPSCPWQHVDNVTPENKG-CTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAVSSFFHLKTH--HHPFWKHLTDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPGVVLQATNTSLRREYGFAGKGVDKHPGGKEATEKRTWEDEISHDVAEQLEGICREWLPPVLLEKFGIG 423
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BLAST of mRNA_H-paniculata_contig1762.4191.1 vs. uniprot
Match: A0A6H5JG38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG38_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 1.020e-28
Identity = 70/173 (40.46%), Postives = 93/173 (53.76%), Query Frame = 2 
Query:  296 DERQQLVVFRDPRPAVVSTFFHLKRKALSTPDDTAIFSMTIDEYVLKMLPTLCQWLAVRYMLFETFLVKQSNVFWYDDARTDPLTWHKEFLASVGVHLPIEVVETATRAAVQLDFAFPIKQI----DVHPGGDN-SVNRTYVDEISAETLSSFDDILRTWLPPVLLARLGVSL 799
            D+  Q  V RDPR   VST+F++K       D  +    ++DE VL +LP LCQ+  +R++LF+  L  +S +FWY+DA  DPL WH  + +  G  LP   ++        +D   P  Q     D HPGG   S  RT+ DEIS       D ILRTWLP VLL RLG+ L
Sbjct:   27 DDSLQFAVLRDPRAVAVSTYFYVKSHPAFYSDHVSR-GKSLDEAVLLILPQLCQFTTIRHLLFDGQLSDKSEIFWYEDAMRDPLGWHYRWASFAGFALPASWIK-------DIDATLPEAQQKVKRDPHPGGQQVSSKRTWEDEISPAIREEMDSILRTWLPGVLLERLGIPL 191
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BLAST of mRNA_H-paniculata_contig1762.4191.1 vs. uniprot
Match: A0A6H5JP89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP89_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 3.220e-28
Identity = 61/151 (40.40%), Postives = 91/151 (60.26%), Query Frame = 2 
Query:  347 STFFHLKRKALSTPDDTAIFSMTIDEYVLKMLPTLCQWLAVRYMLFETFLVKQSNVFWYDDARTDPLTWHKEFLASVGVHLPIEVVETATRAAVQLDFAFPIKQIDVHPGGDNSVN-RTYVDEISAETLSSFDDILRTWLPPVLLARLGVS 796
            S+FFHLK     TP        ++D +VL+MLPT+C ++ +RY++    L  ++  F YD++  DPL WH+ +L+SVG+  P  VV  AT  +++ ++ F  K +D HPGG  +   RT+ DEIS E     +DI R WLPPVLL + G+ 
Sbjct:    8 SSFFHLKTH--HTPLWKYWHDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPAVVLQATNTSLRREYGFVGKGVDKHPGGKEATEKRTWEDEISREVAEQLEDICREWLPPVLLEKFGIG 156
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1762.4191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LJE4_ECTSI4.010e-4535.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG38_9PHAE1.020e-2840.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP89_9PHAE3.220e-2840.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1762contigH-paniculata_contig1762:13473..17469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size901
Cds size633
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929379.8158112-UTR-H-paniculata_contig1762:13472..135801622929379.8158112-UTR-H-paniculata_contig1762:13472..13580Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1762 13473..13580 +
1691480838.202541-UTR-H-paniculata_contig1762:13472..135801691480838.202541-UTR-H-paniculata_contig1762:13472..13580Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1762 13473..13580 +
1622929379.8366778-UTR-H-paniculata_contig1762:15533..155971622929379.8366778-UTR-H-paniculata_contig1762:15533..15597Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1762 15534..15597 +
1691480838.2126813-UTR-H-paniculata_contig1762:15533..155971691480838.2126813-UTR-H-paniculata_contig1762:15533..15597Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1762 15534..15597 +
1622929379.8877852-UTR-H-paniculata_contig1762:17373..174691622929379.8877852-UTR-H-paniculata_contig1762:17373..17469Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1762 17374..17469 +
1691480838.2433927-UTR-H-paniculata_contig1762:17373..174691691480838.2433927-UTR-H-paniculata_contig1762:17373..17469Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1762 17374..17469 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929379.8489563-CDS-H-paniculata_contig1762:15597..157021622929379.8489563-CDS-H-paniculata_contig1762:15597..15702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1762 15598..15702 +
1691480838.2204065-CDS-H-paniculata_contig1762:15597..157021691480838.2204065-CDS-H-paniculata_contig1762:15597..15702Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1762 15598..15702 +
1622929379.861621-CDS-H-paniculata_contig1762:16123..163571622929379.861621-CDS-H-paniculata_contig1762:16123..16357Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1762 16124..16357 +
1691480838.228174-CDS-H-paniculata_contig1762:16123..163571691480838.228174-CDS-H-paniculata_contig1762:16123..16357Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1762 16124..16357 +
1622929379.8738456-CDS-H-paniculata_contig1762:17079..173731622929379.8738456-CDS-H-paniculata_contig1762:17079..17373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1762 17080..17373 +
1691480838.235721-CDS-H-paniculata_contig1762:17079..173731691480838.235721-CDS-H-paniculata_contig1762:17079..17373Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1762 17080..17373 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1762.4191.1prot_H-paniculata_contig1762.4191.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1762 15598..17373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1762.4191.1

>prot_H-paniculata_contig1762.4191.1 ID=prot_H-paniculata_contig1762.4191.1|Name=mRNA_H-paniculata_contig1762.4191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=211bp
MRHGPGIAPLGLVPCIFADGSEPANFNEIVSCMQEVMCPPNDERQQLVVF
RDPRPAVVSTFFHLKRKALSTPDDTAIFSMTIDEYVLKMLPTLCQWLAVR
YMLFETFLVKQSNVFWYDDARTDPLTWHKEFLASVGVHLPIEVVETATRA
AVQLDFAFPIKQIDVHPGGDNSVNRTYVDEISAETLSSFDDILRTWLPPV
LLARLGVSLT*
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mRNA from alignment at H-paniculata_contig1762:13473..17469+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1762.4191.1 ID=mRNA_H-paniculata_contig1762.4191.1|Name=mRNA_H-paniculata_contig1762.4191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3997bp|location=Sequence derived from alignment at H-paniculata_contig1762:13473..17469+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGGACAGAGACAGAGGAGAGATTGGGTATTTGGACATTCTCTTCGAAC
CTCGAGTGCCTGAAAAAGGCGCTACCCATACTCATTGTCCATGCGATGAT
GTCGACAGGTGAAACGGTCTAAGCTACGTTTATGTGCCACACAAGGGTTG
AGTTTTAATACGTTATCGCCGTATGCAGTGCTTGAATCTTTTCTCCTCCG
TTCAGTAAGCTAATGAACTAAGATTTATGTGAGACATCAGTGACGTCTGA
TTTTGTGTTGTTTGCATATTTGGAATCGTCGATGTTTTGGGGGTTGGACC
CCAACATTTCACGGCACTCCGTGGAGCCTAATGCGTGCACGAGCGGACCT
ACGCTCGAACGGGTAGGGTAGCTCATGAATTGAGCATGACTGGAAATCTA
GTCAGAGGTCTTTTAGTGGGTGCAATCCTCACACTGCCTACTTGTTTCGG
ACGAACCGTGGTGGCGCCTACCGCGCAGAGGAATCAATATCTCTGTTCTG
TTAAAGGAAATGCAGAAATACTTCGGTATGGAAGCATCCGTAAAGGTTTT
GCCTCAGCCTTCTGGGGGTTAAAAAACACCGAGCGGCTAAAAAAGAAGCA
AATGACCTAGAAATCACCCCAAAAAGGTGCATGTTGGGATTCAACCACGC
ATTCTACCGATTCGTGACAACTCGGTGCAGTGAACGGCTGCGTCCCAAAA
TGAACCGTCTTTTGGCTGATTTTGGCGCGATTTTTACTGTTTTGGAGCCG
CTCGTGCACGCCGTGGGCTGCATGTATTGCCGTGAAATTTTGGAGTCCAA
TTAGAAATACGTCAAGGATTTCAAATCTGTAAAAATAAAAACAGGATAGG
TGATGAATGCCTCACACCAATCTGAGTTCCTTTGCTTGATGAACGGAGGA
GGTATTAGTGTTTGACGGGCATTTGTCCAGCCGCCGAGGACTGAAGATAC
TTCGACATCGTGACACTTATTGCCGAGCATATGAATGTCACCCTTGCATA
CGGGATAGTATGGTAATTGAAGGTCAGAAAAGCTCCAACACACAGCTTAT
TCTCTGCACAGTACCAGTAGGCTTCGGGGATTTATTGTGTACACACCAGG
TTGATGTACCGAAGGAGTTTCAGGTGGCCAGAGAGTTAGTTCAGTATCGT
ATATTTCTGAGATATACTTCTTAGTATGTTTAGGTCTTGCGGTAAATGTC
TTTGGTCCCATCTTTTCCTGTGCTTATTTTTTGTGATAACTTTTCGTTCA
CTTGTGCTTGAGAGGGAATGGAGCAGGTGTAATTTTTGGTTTCATCTATA
CTTTCAATAGTGTACACGAAAGAACGCAAGCAATCTCTGCCTTACCTGTT
GCAGTAAGTTTGTGCCAGTAGTAAGTTCAAGTTACAGCAGCCGGGTGTGC
TATTTATAGACGCGCAAAACTCGAAGCGATGTTGTGACAAAATGCTTGGA
TGAGTATATTTTTATGCGCACATTCACACACAACGGAACAGTACAGGCAG
GTTCACGGTACCAATGCAGAATAGTGTTTTTCTTCTCGCCCGTCTTCTTG
AGTGTTGGACGAAATTTCCTGTACGATTTCCTTGTTTGATACCCAACCAA
GTACCTGTGTCGAGCCTCTTTTTTCGATTCTGATCAACGCACAGTTGGAG
TTCCGCGGATCCCTCAGGCCGAACATTACGCTAGGACTTCAGAAAGCCGA
TGTTTCACGATCACCGTGGTATCGACACACGTGTTGCTCACGGATTTGCA
TGTGTCATCTAGGCAATCTTCAAAAGAAGGGGAGGATAGTGTCTTTTCGA
ATTCATTCTGTGTGTGGACCGATACGGAAGCTGAAAACCAGTAGAAAATA
CAACAGGAAGGATCAACCACACTTGATGATCCGCGGTATGGCGGCCCCAA
ACTTCGAGTGAAAACGACAAACAGATCAACGCATACAGATTCACTGTCAA
AACTTACATTTTCTGGCGTCCCTGCAATGACCTCGCACGTCATGGACGCT
TCGTTCGCTGTTGCGTCGCATGTTCTTGAATTCCGCACATATTCAATCCG
CCCGAGAAAAGGGTATTCATCAGCATCACTGCTAGACAAGAAAAACATCA
TCTTCCTTTTTCAAGCAAATGCCCCATGAGGCATGGTCCTGGAATTGCGC
CATTAGGCTTGGTTCCCTGTATATTTGCGGATGGTTCTGAGCCGGCCAAT
TTCAACGAGATTGTGAGCTGCATGCAAGAGGTGAGGCGGAGTGGGATGTA
CTCACTGTTCTACCTGTTACCGTGGTGTCTGCAAGTGTACTGCAATTCAT
GGTCACGCAACACTTGTGAGAATCTCCTGTGTAATAATTGTAGATTAGGT
TTTCAAAACCTCAGACGTGACGGCTAGGTATTCATGACAGTGCATCTCGA
GTAGGGCTATTAATTTAAGTAAGGAGATGCAGTGACATTTCATCCTACCT
CGACGTATTTTCGAAACTCTGGCTTCCGCGATGATGCGAATATGATCAGG
TCAGGAGAAACGTGTACCAAACCTTATCGCTGTATGTGATCTATCGGAGT
GTTACGAAGGCCGCAATGCTGCTGCATTGCCAGGAACTACCAAGTACCTT
TTTGCAACGTGATACACAGGAATCACATGTTTTACTTTTTGCGTATCACA
GGTAATGTGCCCGCCTAACGATGAGAGACAGCAATTGGTGGTGTTTCGCG
ATCCGCGGCCTGCAGTCGTTTCAACATTTTTTCACCTGAAGAGGAAAGCC
CTGAGCACGCCCGACGATACGGCTATTTTCTCGATGACCATCGACGAGTA
CGTGCTGAAGATGCTCCCAACACTTTGCCAATGGCTGGCGGTTAGGTACA
TGCTATTCGAAACCTTCCTCGTCAAGCAATCAAACGTGAGTCGGTCATGA
CGCAAAATGAGTCATTCTTCAATCGTTGAACGGGTCTCTCAACTTTTGGT
TGATACTTACTATTAGGGGTAATAATGAAGAGTAGCTCTCCAACCTGCTC
CCATTAGAGCGCATGAAGCTCTATCCAGGAATCAGCCATCAGCACATTTT
GCATCAGTAGAGTATCTTGTCGCTGTCCTGGAGCAGGAATTTCGTGTCAC
AAGGAAGTCCGAAAAGCAGCAGCTGTGCCTGTATCATTTTATACGTGCGG
TTGGTGAAGCGCCGGTCGTCGTAGAACGGACACAATGTAGTTCAACAGGC
CCCCGAACCATTTGCGTTCCATTTTTTTTGTTACAGTGCATCACGGCACT
GGTGACATGTGGAGCGTTCCCTGCTCACCCTTGACCATTATCATCTGTCT
CCCACTTAGTTCCGTTTTGGCTTCAGTCTCCAATTCTTTGTTTTTTCATC
TGCTCGTCCCAAGTTCGCACTTCTTATCATATGCACATTTCTTGATAATT
GGGCCAACACTTCAAACACAGCTTACAGCGTGCAACCCCGTATATACGAG
GCGGCTTTTACAGATGGGTGAAGGCATCCGTTGTTTCCATGCAGCCACCG
CGCAGTGGTAGCACCTCTGACATGCATGTGAAGGGTCCTCGCCTGTTCAC
GTTTCGCCTTCACATGTGAGACCGACGCATCTATTGATATATACGTTCAT
TTTGCAGGTTTTCTGGTATGACGACGCGCGAACGGATCCGTTGACGTGGC
ACAAAGAATTCTTGGCTTCGGTGGGCGTGCACCTGCCGATTGAAGTGGTG
GAAACTGCGACAAGAGCTGCAGTGCAACTAGATTTTGCTTTCCCAATAAA
GCAAATAGATGTACATCCTGGAGGAGACAACTCGGTGAATAGAACGTACG
TTGACGAGATCTCCGCCGAAACTTTGTCGAGCTTTGATGACATTTTGAGG
ACTTGGTTGCCTCCTGTCCTGCTGGCTAGATTGGGTGTGTCGCTCACGTA
GCGGCAGATTGATACCATGTGTGTACGCATTGCGAAGTGAGGTCGCGTCG
CGTTCGCTAGCATTGCTATTGATGTAATTATTGAGAACAACACGACA
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Coding sequence (CDS) from alignment at H-paniculata_contig1762:13473..17469+

>mRNA_H-paniculata_contig1762.4191.1 ID=mRNA_H-paniculata_contig1762.4191.1|Name=mRNA_H-paniculata_contig1762.4191.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1266bp|location=Sequence derived from alignment at H-paniculata_contig1762:13473..17469+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGCATGGTCCTGGAATTGCGCCATTAGGCTTGGTTCCCTGTATATT
TGCGGATGGTTCTGAGCCGGCCAATTTCAACGAGATTGTGAGCTGCATGC
AAGAGATGAGGCATGGTCCTGGAATTGCGCCATTAGGCTTGGTTCCCTGT
ATATTTGCGGATGGTTCTGAGCCGGCCAATTTCAACGAGATTGTGAGCTG
CATGCAAGAGGTAATGTGCCCGCCTAACGATGAGAGACAGCAATTGGTGG
TGTTTCGCGATCCGCGGCCTGCAGTCGTTTCAACATTTTTTCACCTGAAG
AGGAAAGCCCTGAGCACGCCCGACGATACGGCTATTTTCTCGATGACCAT
CGACGAGTACGTGCTGAAGATGCTCCCAACACTTTGCCAATGGCTGGCGG
TTAGGTACATGCTATTCGAAACCTTCCTCGTCAAGCAATCAAACGTAATG
TGCCCGCCTAACGATGAGAGACAGCAATTGGTGGTGTTTCGCGATCCGCG
GCCTGCAGTCGTTTCAACATTTTTTCACCTGAAGAGGAAAGCCCTGAGCA
CGCCCGACGATACGGCTATTTTCTCGATGACCATCGACGAGTACGTGCTG
AAGATGCTCCCAACACTTTGCCAATGGCTGGCGGTTAGGTACATGCTATT
CGAAACCTTCCTCGTCAAGCAATCAAACGTTTTCTGGTATGACGACGCGC
GAACGGATCCGTTGACGTGGCACAAAGAATTCTTGGCTTCGGTGGGCGTG
CACCTGCCGATTGAAGTGGTGGAAACTGCGACAAGAGCTGCAGTGCAACT
AGATTTTGCTTTCCCAATAAAGCAAATAGATGTACATCCTGGAGGAGACA
ACTCGGTGAATAGAACGTACGTTGACGAGATCTCCGCCGAAACTTTGTCG
AGCTTTGATGACATTTTGAGGACTTGGTTGCCTCCTGTCCTGCTGGCTAG
ATTGGGTGTGTCGCTCACGTAGGTTTTCTGGTATGACGACGCGCGAACGG
ATCCGTTGACGTGGCACAAAGAATTCTTGGCTTCGGTGGGCGTGCACCTG
CCGATTGAAGTGGTGGAAACTGCGACAAGAGCTGCAGTGCAACTAGATTT
TGCTTTCCCAATAAAGCAAATAGATGTACATCCTGGAGGAGACAACTCGG
TGAATAGAACGTACGTTGACGAGATCTCCGCCGAAACTTTGTCGAGCTTT
GATGACATTTTGAGGACTTGGTTGCCTCCTGTCCTGCTGGCTAGATTGGG
TGTGTCGCTCACGTAG
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