mRNA_H-paniculata_contig1762.4190.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1762.4190.1 vs. uniprot
Match: D8LT62_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT62_ECTSI) HSP 1 Score: 474 bits (1220), Expect = 2.260e-155 Identity = 368/669 (55.01%), Postives = 450/669 (67.26%), Query Frame = 1
Query: 37 EKVDRLLANQDTPDANFADSFIGDEAVWQITDALFNNSAKTRVFLDRNCIGAGGAAALGDMLKVVNNSISFLSLEWNNIGTFEQGIQSLADGLEVNGSLETLILCNNHIAVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGNKVDDYLMENIEAALSDRQSGAMAQTMLLDNLHVTREKAEKLEARLRRQTAEEETHRRVERERERKWQEEITRGKXXXXXXXXXXXXXXXXXXXXXAELEEKLVHEQSRTVNLSAKLEREGERRQTTQDELDQTKQARCPTRNESKHLTRQVEKLQEALDSANEDRRVTQAELERTRNVLEDELIALKDELRTANTAMETIKRASTRATAEAEQATSLLDTARAEVRLTAERADEATAGMARAARDGVTTLDETRRMYEERVEAIKLECEARMRAAEDRSRAVEHERQRAEMSRQATCKELTRLQVLMEERISQTEKRILTEAQKQFELELAELRERINAVHKARESKESQAREHLASLEELRLRSTAELRDFSRELAANGQELEKARDTARSHEGRASKLQTEVHILRRAVEGLQQRVEEAERDKHHASEVHSTNMSKIQLQHATELAEAERRGLETRKAYSAVEERATSTEERLAALKQTHLQDLHALQRSIDQVFTEAVVSTRQ 2043
++VDRLL N + DANFAD F+GDEAV QI+DAL +N +KTRV LDRNC+GA GAAALGDMLKV N+SI+ LSLEWNNIGT ++G+Q LADGLEVN SL L+LCNNHI Q XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +L E+I+AALSDR SG + +T L D+LHV+R KAE+LEARLRRQ EEE+H+R++RERE+KW+E++ K AELEE+L+HE+SR +L KLERE ERR+ Q ELD+TKQ TR E LTRQ E+L T ++ +RA+TRA AEAEQAT+L +TARAEVRLTAERADEA A +ARA RDG T L+ETRRMYEERVEA + + +AR+++AE+R+ RQA KEL RLQV +EERISQ EKR++ EAQKQF+LELAELRERI+AV K ESKE+Q+RE+LASLE+LRLRSTAELRDF RELAA G+ELEK+R++AR+ EG+ASKLQ ++ + +R EG +EL + ERR E R A A E+ A EER++AL+Q HL L L+ ++ Q +AV S RQ
Sbjct: 10 DEVDRLL-NDGSTDANFADKFVGDEAVRQISDALASNCSKTRVLLDRNCVGADGAAALGDMLKV-NSSIASLSLEWNNIGTCDEGLQRLADGLEVNRSLTALVLCNNHITAQGASCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLQESIQAALSDRDSGNLVKTALWDDLHVSRGKAEQLEARLRRQALEEESHKRLDREREQKWKEDLVTVKQDSARHRLDFERQMGASAKQMAELEEQLIHERSRGSSLGNKLERESERREAIQGELDKTKQTLLETRRE---LTRQTERLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVTTEIDASRRAATRAKAEAEQATALHETARAEVRLTAERADEAVAAVARATRDGATALEETRRMYEERVEASQADRDARVKSAEERAXXXXXXXXXXXAVRQAASKELARLQVSVEERISQNEKRVVVEAQKQFDLELAELRERIDAVQKITESKEAQSREYLASLEDLRLRSTAELRDFGRELAAAGEELEKSRNSARNSEGKASKLQADLGVQQRVTEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSELKDMERRLSEARAACRAAEKTAKENEERVSALRQVHLHSLRLLESTVGQALGDAVASARQ 673
BLAST of mRNA_H-paniculata_contig1762.4190.1 vs. uniprot
Match: A0A6H5KCD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD5_9PHAE) HSP 1 Score: 238 bits (607), Expect = 3.590e-69 Identity = 161/329 (48.94%), Postives = 208/329 (63.22%), Query Frame = 1
Query: 1057 VLEDELIALKDELRTANTAMETIKRASTRATAEAEQATSLLDTARAEVRLTAERADEATAGMARAARDGVTTLDETRRMYEERVEAIKLECEARMRAAEDRSRAVEHERQRAEMSRQATCKELTRLQVLMEERISQTEKRILTEAQKQFELELAELRERINAVHKARESKESQAREHLASLEELRLRSTAELRDFSRELAANGQELEKARDTARSHEGRASKLQTEVHILRRAVEGLQQRVEEAERDKHHASEVHSTNMSKIQLQHATELAEAERRGLETRKAYSAVEERATSTEERLAALKQTHLQDLHALQRSIDQVFTEAVVSTRQ 2043
+ E+E+ LK+ELR TA+ +TARAEVRLTAERADEA A + RA RDG T L+ETRRMYEERVEA + + +AR+++AE+R+ QA KEL RLQV +EER++Q EKR++ EAQKQF+LEL ELRERI+AV + ESKE+Q+RE+LASLEELRLRSTAELRDF RELAA G+ELEK+R++AR+ EG+ASKLQ ++ + +R EGL QH +EL + ERR E R A A E+ A EER++AL+Q HL L L+ ++ Q +AV S RQ
Sbjct: 1 MFENEVAGLKEELRAVITALH--------------------ETARAEVRLTAERADEAVAAVTRATRDGATALEETRRMYEERVEASQADRDARVKSAEERAXXXXXXXXXXXXXXQAASKELARLQVSVEERLAQNEKRVVAEAQKQFDLELVELRERIDAVQRITESKEAQSREYLASLEELRLRSTAELRDFGRELAAAGEELEKSRNSARNSEGKASKLQADLGVQQRVAEGLXXXXXXXXXXXXXXXXXXXXXXXXXXXQHGSELKDMERRLSEARAACRAAEKNAKENEERVSALRQVHLHSLRLLESTVGQALGDAVASARQ 309
BLAST of mRNA_H-paniculata_contig1762.4190.1 vs. uniprot
Match: A0A836CKE5_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKE5_9STRA) HSP 1 Score: 198 bits (504), Expect = 4.000e-51 Identity = 246/701 (35.09%), Postives = 339/701 (48.36%), Query Frame = 1
Query: 67 DTPDANFADSFIGDEAVWQITDALFNNSAKTRVFLDRNC-IGAGGAAALGDMLKVVNNSISFLSLEWNNIGTFEQGIQSLADGLEVNGSLETLILCNNHIAVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGNK----------------------------------------VDDYLMENIEAALSDRQSGAMAQTMLLDNLHVTREKAEKLEARLRRQTAEEETHRRVERERERKWQEEITRGKXXXXXXXXXXXXXXXXXXXXXAELEEKLVHEQSRTVNLSAKLEREGERRQTTQDELDQTKQARCPTRNESKHLTRQVEKLQEALDSANEDRRVTQAELERTRNVLEDELIALKDELRTANTAMETIKRASTRATAEAEQATSLLDTARAEVRLTAERADEATAGMARAARDGVTTLDETRRMYEERVEAIKLECEARMRAAEDRSRAVEHERQRAEMSRQATCKELTRLQVLMEERISQTEKRILTEAQKQFELELAELRERINAVHKARESKESQAREHLASLEELRLRSTAELRDFSRELAANGQELEKARDTARSHEGRASKLQTEVHILRRAVEGLQQRVEEAERDKHHASEVHSTNMSKIQLQHATELAEAERRGLETRKAYSAVEERATSTEERLAALKQTHLQDLHALQRSIDQVFTEAVVSTRQR 2046
D + N +D+ + + V I D+L + + R + A GAAAL D L+V N+SI+ +SLEWN+IG FE G++ NN I+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +GNK VD L+ENIEA L+DR + D+LHV RE+AE+LEARLRR A+E R E ERER+W E+ R +H +++ + L RQVE+LQ A+D ANEDRR Q + E R+ L+ EL +E R T ++ R R +Q + LDTA AEVRL ER DE A ARAA +G ++ET +EL RLQVL+EE++++ E+ + E + +++ E+ EL ERI +V K RE +E + + A L+ R +S AELR+ ++EL +L+ AR+ +R+ EG+A+KL T+V +L+R E LQ + + ERD+ H +E H + K+Q QHA+E+ ER+ E R A SA+E + T E +AA + H + L L +SI Q EA + R R
Sbjct: 30 DQDELNLSDTILNEADVQHIADSLRHTDCTQHALILRGSQVSAEGAAALADALRV-NDSITTVSLEWNSIGLFESGLEXXXXXXXXXXXXXXXXXRNNCISPAGGRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLAGNKAMLCLTIVLPQICHWWTPHEKRNQRSATVPALHFVTPLLKVDPMLLENIEALLNDRGAAGELALATRDDLHVARERAEQLEARLRRTAADEAALRSKEAEREREWHAELAR------------------------------IHAETK------------------------------------RGLERQVERLQAAVDGANEDRRSEQRQSELARSSLDKELAETVEEARRLQTELDRALRNGKRLQTLTDQLQASLDTAHAEVRLLHERVDEHAALAARAASEGRAAVEETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRELARLQVLLEEKVAEAERSVRDEQRNRYDAEVKELVERIESVQKMRELQEGELKGLTAQLDAQRSQSAAELRELNKELLRYRDQLDAAREGSRAAEGKAAKLSTDVGVLQRKAEVLQSKCDSLERDRQHTAEAHQGSTDKLQAQHASEVRALERQLQEARAAISALEGKLTDCAEEMAAARAQHTRTLGVLDKSIAQSLAEAFEAARAR 663
BLAST of mRNA_H-paniculata_contig1762.4190.1 vs. uniprot
Match: A0A3R7G9A2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G9A2_9STRA) HSP 1 Score: 77.4 bits (189), Expect = 4.880e-11 Identity = 41/94 (43.62%), Postives = 61/94 (64.89%), Query Frame = 1
Query: 82 NFADSFIGDEAVWQITDALFNNSAKTRVFLDRNCIGAGGAAALGDMLKVVNNSISFLSLEWNNIGTFEQGIQSLADGLEVNGSLETLILCNNHI 363
+F++S++GD+ +I + S TR+ L NC AG A AL +L+ +N +S +SLEWNN+G +QG+ +LAD LEV+ L TL L NN+I
Sbjct: 30 DFSNSYLGDDKFAEIVEKARLTSVSTRLDLRGNCFEAGAARALAALLRSSHNIVS-ISLEWNNVGLLDQGVDALADALEVDTRLVTLDLRNNNI 122
BLAST of mRNA_H-paniculata_contig1762.4190.1 vs. uniprot
Match: A0A2P4XN77_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XN77_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 1.010e-9 Identity = 38/94 (40.43%), Postives = 63/94 (67.02%), Query Frame = 1
Query: 82 NFADSFIGDEAVWQITDALFNNSAKTRVFLDRNCIGAGGAAALGDMLKVVNNSISFLSLEWNNIGTFEQGIQSLADGLEVNGSLETLILCNNHI 363
++++S++GD+ +I + + +A TR+ L NC AG A AL +L+ +N ++ +SLEWNN+G +QG+++LA LEV+ L TL L NN+I
Sbjct: 34 DYSNSYLGDDKFAEIVETVRLANAPTRLDLRGNCFEAGAARALAALLRSSHNVVA-ISLEWNNVGLLDQGVEALAGALEVDKRLLTLDLRNNNI 126
BLAST of mRNA_H-paniculata_contig1762.4190.1 vs. uniprot
Match: W2PQA2_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2PQA2_PHYPN) HSP 1 Score: 72.8 bits (177), Expect = 1.350e-9 Identity = 43/115 (37.39%), Postives = 67/115 (58.26%), Query Frame = 1
Query: 19 AAVLDTEKVDRLLANQDTPDANFADSFIGDEAVWQITDALFNNSAKTRVFLDRNCIGAGGAAALGDMLKVVNNSISFLSLEWNNIGTFEQGIQSLADGLEVNGSLETLILCNNHI 363
AA L K+ L N ++++S++GD+ +I + S TR+ L NC AG A AL +L+ +N ++ +SLEWNN+G +QG+++LA LEV+ L L L NN+I
Sbjct: 16 AAALVHPKLVSSLVNPANTVLDYSNSYLGDDKFGEIIEKARRASVPTRLDLRGNCFEAGAARALATLLRSSHNVVA-ISLEWNNVGLLDQGVEALAGALEVDNRLLILDLRNNNI 129
BLAST of mRNA_H-paniculata_contig1762.4190.1 vs. uniprot
Match: A0A6A3LJL6_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LJL6_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 3.090e-9 Identity = 38/94 (40.43%), Postives = 61/94 (64.89%), Query Frame = 1
Query: 82 NFADSFIGDEAVWQITDALFNNSAKTRVFLDRNCIGAGGAAALGDMLKVVNNSISFLSLEWNNIGTFEQGIQSLADGLEVNGSLETLILCNNHI 363
++++S++GD+ +I + S TR+ L NC AG A AL +L+ +N ++ +SLEWNN+G +QG+++LA LEV+ L TL L NN+I
Sbjct: 35 DYSNSYLGDDKFAEIVEKARLASVPTRLDLRGNCFEAGAARALAALLRSSHNVVA-ISLEWNNVGLLDQGVEALAGALEVDKRLLTLDLRNNNI 127
BLAST of mRNA_H-paniculata_contig1762.4190.1 vs. uniprot
Match: A0A329SZB0_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SZB0_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 5.390e-9 Identity = 37/94 (39.36%), Postives = 61/94 (64.89%), Query Frame = 1
Query: 82 NFADSFIGDEAVWQITDALFNNSAKTRVFLDRNCIGAGGAAALGDMLKVVNNSISFLSLEWNNIGTFEQGIQSLADGLEVNGSLETLILCNNHI 363
++++S++GD+ +I + S TR+ L NC AG A AL +++ +N ++ +SLEWNN+G +QG+++LA LEV+ L TL L NN+I
Sbjct: 37 DYSNSYLGDDKFAEIVEKTRLASVPTRLDLRGNCFEAGAARALAALMRSSHNVVA-ISLEWNNVGLLDQGVEALAGALEVDKRLLTLDLRNNNI 129
BLAST of mRNA_H-paniculata_contig1762.4190.1 vs. uniprot
Match: H3GJ95_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJ95_PHYRM) HSP 1 Score: 69.7 bits (169), Expect = 1.300e-8 Identity = 37/94 (39.36%), Postives = 60/94 (63.83%), Query Frame = 1
Query: 82 NFADSFIGDEAVWQITDALFNNSAKTRVFLDRNCIGAGGAAALGDMLKVVNNSISFLSLEWNNIGTFEQGIQSLADGLEVNGSLETLILCNNHI 363
++++ ++GD+ +I + S TR+ L NC AG A AL +L+ +N ++ +SLEWNN+G +QG+++LA LEV+ L TL L NN+I
Sbjct: 31 DYSNLYLGDDKFTEIVEKARLASVPTRLDLRGNCFEAGAARALAALLRSSHNVVA-ISLEWNNVGLLDQGVEALAGALEVDKRLLTLDLRNNNI 123
BLAST of mRNA_H-paniculata_contig1762.4190.1 vs. uniprot
Match: UPI000A2A4C00 (leucine-rich repeat-containing protein 45 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A4C00) HSP 1 Score: 63.9 bits (154), Expect = 7.500e-7 Identity = 37/93 (39.78%), Postives = 54/93 (58.06%), Query Frame = 1
Query: 85 FADSFIGDEAVWQITDALFNNSAKTRVFLDRNCIGAGGAAALGDMLKVVNNSISFLSLEWNNIGTFEQGIQSLADGLEVNGSLETLILCNNHI 363
F+D + +E+ + L N + T + L N I GGA LG LK N S+ L LEWN++G ++ GI++LA+GL +N +L L L NN I
Sbjct: 68 FSDCLLSEESCKLVLLGLMPNRSITSLNLKGNNIRCGGAEVLGQFLKK-NTSVHSLRLEWNSLGLWDSGIETLAEGLALNQTLMILDLRNNQI 159 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1762.4190.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1762.4190.1 >prot_H-paniculata_contig1762.4190.1 ID=prot_H-paniculata_contig1762.4190.1|Name=mRNA_H-paniculata_contig1762.4190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=688bp MVTKTVAAVLDTEKVDRLLANQDTPDANFADSFIGDEAVWQITDALFNNSback to top mRNA from alignment at H-paniculata_contig1762:737..10304+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1762.4190.1 ID=mRNA_H-paniculata_contig1762.4190.1|Name=mRNA_H-paniculata_contig1762.4190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9568bp|location=Sequence derived from alignment at H-paniculata_contig1762:737..10304+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1762:737..10304+ >mRNA_H-paniculata_contig1762.4190.1 ID=mRNA_H-paniculata_contig1762.4190.1|Name=mRNA_H-paniculata_contig1762.4190.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4128bp|location=Sequence derived from alignment at H-paniculata_contig1762:737..10304+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |