mRNA_H-paniculata_contig17601.4188.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17601.4188.1
Unique NamemRNA_H-paniculata_contig17601.4188.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17601.4188.1 vs. uniprot
Match: A0A6H5JZ11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ11_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 1.570e-11
Identity = 60/198 (30.30%), Postives = 97/198 (48.99%), Query Frame = 3 
Query:  390 FTDAGDAVLSSSVDRDSDLSWKVLKEGRTLVALVPQLSRLQPVTDDLAAACRENTRTGLWSTMQSADKSQKMVGSKLLPINVPESNV------RHSVHEEMASRQDRADGSPARQVAMMAAAVKGLEIKESDIHGVGLFAINDMDAGAFVDICCFGTFEVYDSVQEVHDALADGVPRYMV--TADVASLCVAGEVSRP 959
            F  AGD+VL ++ D ++ ++  VL  GRTL ALV  +S+   V   + AAC +  R G ++ +    K+  ++    LP  VPE+N+      RH   +E+A      + +     A + A    +EI+ S IHG+GLFA++D+     + I   G FE +         L D VPR+ +   +D + +      SRP
Sbjct:    6 FAVAGDSVLVTAFD-ENPIAPLVLGNGRTLCALVADMSKKDDVDKAVDAACTDAMRHGWFAELC---KANVIISGSTLPSIVPENNLSNEAVPRHLEGQELAGPDVETEETSCLYSARVFADEFHVEIEPSSIHGLGLFAVHDLPKDEAMPIPLMGDFEFHTPEGAFGMMLDDKVPRHPLLDASDFSVVIWTQRKSRP 199
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17601.4188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JZ11_9PHAE1.570e-1130.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17601contigH-paniculata_contig17601:2931..5405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1199
Cds size1122
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17601.4188.1prot_H-paniculata_contig17601.4188.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17601 2963..5360 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929379.0150359-UTR-H-paniculata_contig17601:2930..29621622929379.0150359-UTR-H-paniculata_contig17601:2930..2962Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17601 2931..2962 +
1691480837.9552104-UTR-H-paniculata_contig17601:2930..29621691480837.9552104-UTR-H-paniculata_contig17601:2930..2962Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17601 2931..2962 +
1622929379.0867324-UTR-H-paniculata_contig17601:5360..54051622929379.0867324-UTR-H-paniculata_contig17601:5360..5405Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17601 5361..5405 +
1691480838.0149715-UTR-H-paniculata_contig17601:5360..54051691480838.0149715-UTR-H-paniculata_contig17601:5360..5405Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17601 5361..5405 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929379.0288255-CDS-H-paniculata_contig17601:2962..29901622929379.0288255-CDS-H-paniculata_contig17601:2962..2990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17601 2963..2990 +
1691480837.966521-CDS-H-paniculata_contig17601:2962..29901691480837.966521-CDS-H-paniculata_contig17601:2962..2990Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17601 2963..2990 +
1622929379.0423162-CDS-H-paniculata_contig17601:3687..40151622929379.0423162-CDS-H-paniculata_contig17601:3687..4015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17601 3688..4015 +
1691480837.9764156-CDS-H-paniculata_contig17601:3687..40151691480837.9764156-CDS-H-paniculata_contig17601:3687..4015Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17601 3688..4015 +
1622929379.0580094-CDS-H-paniculata_contig17601:4346..47161622929379.0580094-CDS-H-paniculata_contig17601:4346..4716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17601 4347..4716 +
1691480837.993751-CDS-H-paniculata_contig17601:4346..47161691480837.993751-CDS-H-paniculata_contig17601:4346..4716Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17601 4347..4716 +
1622929379.0740592-CDS-H-paniculata_contig17601:4964..53601622929379.0740592-CDS-H-paniculata_contig17601:4964..5360Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17601 4965..5360 +
1691480838.0050619-CDS-H-paniculata_contig17601:4964..53601691480838.0050619-CDS-H-paniculata_contig17601:4964..5360Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17601 4965..5360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17601.4188.1

>prot_H-paniculata_contig17601.4188.1 ID=prot_H-paniculata_contig17601.4188.1|Name=mRNA_H-paniculata_contig17601.4188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=374bp
MLCDSSHLRALLKEAGLIMESVPLVSHYGNGNAGRKKKKQKLMLRNQGSI
ILTAHKGDVLICNGGTGSRSTPSAARASRRNAVGFPADTAFNAGAVVSQQ
HPPKGTYITENAAEVLIRRFTDAGDAVLSSSVDRDSDLSWKVLKEGRTLV
ALVPQLSRLQPVTDDLAAACRENTRTGLWSTMQSADKSQKMVGSKLLPIN
VPESNVRHSVHEEMASRQDRADGSPARQVAMMAAAVKGLEIKESDIHGVG
LFAINDMDAGAFVDICCFGTFEVYDSVQEVHDALADGVPRYMVTADVASL
CVAGEVSRPNAALFLVPLPCNFLWYMNSCGAEPDKTNVVGKTMFEPKNWI
LTRDRRMKGVVVEEPGKDPCGKH*
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mRNA from alignment at H-paniculata_contig17601:2931..5405+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17601.4188.1 ID=mRNA_H-paniculata_contig17601.4188.1|Name=mRNA_H-paniculata_contig17601.4188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2475bp|location=Sequence derived from alignment at H-paniculata_contig17601:2931..5405+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAGGGCACCATCGCCCTGGCTCTTCCTGACATGTTGTGTGACAGCTCA
CATCTGAGAGGTACGTTTGGCGTGATAATGGTGAATCCTTGTGCTCATGC
TTTTACATTAAAGTCTTGGTCCTTTGTTTTTGGACTGCATAACGGGTCTC
ATCGTCTACCTCGAGTAAAATGCAGTGTACTATAATAATACGTTGATCGG
GATTGAGAACCTGTGTGCGTTGGCGTGGCGGCTCCTCGAATAACTTCATT
AAGCCGTGTGCCTTGATGTTGAGTGTGGTGTGTGTACAGCAGCCTCCCCC
CTCTCTACTTTTGTGTTCTATTTTGGGGGCACATCCCTGGGCACCACTGC
TGTGCCCCCCAAAAAATAACGAAAAATCACAACCACCAGCCGCCGTAAAA
TACCCCTGATTATTTGAGGCACCCTCAAGCAGAAACACTCTTGGATTTTC
CGCACAAAATATCATAACCAATTGCGACGTCGGTATGAATGAGAAGCCGC
GGTGTTCTAATACAATATTCGTTTGGTAATTGAACAGCGAACTGTAGACG
GTTACCGTATCTGTAAGTCCCAGTATTTCTAGGCGGTTGATGCCGGTACT
GCGTAGCGCTCGCTATTGTATACTGTGCTGCTATTATAGTATTAGTGCTC
GAATACCAAATTCAAAAATGTGCACCGTTTGTTGTTTTTGTAGAAGAGGG
AAGTTCACGATTCGTACTCCTGTTACTATGCTGTACTGCGTTTACCGTGT
GTCGCAGCTTTGCTGAAAGAGGCTGGGCTTATCATGGAGTCCGTGCCTCT
CGTCTCGCATTATGGTAACGGAAACGCGGGCCGTAAGAAAAAGAAGCAGA
AGCTCATGCTCCGCAACCAGGGCTCCATCATCCTCACAGCGCACAAAGGA
GATGTGCTCATCTGCAACGGCGGTACCGGGTCGAGATCGACGCCTTCGGC
AGCGCGGGCGTCAAGACGCAACGCCGTCGGTTTTCCTGCTGACACCGCCT
TCAACGCAGGGGCTGTGGTATCCCAGCAGCACCCACCGAAGGGAACGTAT
ATCACCGAAAACGCGGCAGAGGTTCTGATCCGACGGTAAGGATACGATGG
GGGGGGCGTTCTTTTGGCTATTCTTGGTGTCTGCCTTTAGTCTAAGTTTG
CTGTTTTTAGGGCCGTCATGCCGTTGCTGTGTGTTCGCCCGTTGCATTTT
TCTATAGCACTGTCGAATACGATAGCAAGGTAATTGTTGTATTCAACATG
CTACTCCGTGCAGTTCAGTTCATCAAACTGAAAATACCGCGCCTCCGCCA
CTGCAAAATCGATCGCATCAGTGATTTGATATTTGATGTACTCTACTACC
TCTATTCGTTATACTCGTTTTTTAACAGAGGTGTTCATCATTCCCGCTTC
CCTCGATTTGTACCAGATTTACGGATGCGGGTGATGCGGTCCTATCTTCT
TCCGTTGATCGAGACAGCGACCTCTCGTGGAAGGTGCTTAAGGAGGGCCG
GACCCTTGTCGCACTCGTGCCCCAACTTTCGAGGCTCCAACCTGTAACTG
ATGACTTGGCTGCTGCCTGCCGCGAGAACACCCGGACAGGGCTGTGGTCG
ACGATGCAATCGGCGGACAAGTCCCAGAAAATGGTGGGAAGTAAACTCCT
ACCCATCAACGTCCCGGAGTCCAACGTTCGGCACTCCGTACACGAGGAGA
TGGCGTCCAGACAGGACAGAGCGGATGGCTCCCCTGCCCGGCAGGTCGCC
ATGATGGCGGCTGCTGTCAAGGGCCTCGAGATAAAGGTATGTACCTCGAT
TAGAGCTGTGCATGGGACAGCCGGACTTCATGTTGTGCGATTATCGGGGC
TAGTTTGCTGTTGCTGAATAGTGGTACATACCATGTAAATATTTGAGCTT
ATGTGTGAATCGGGTGGAAAGTCTAAGTTAAGTACTTAGCCCACCTCCTC
CGCGACCATGTTATCACACTAATTACGAACTTGCTTGTGACGCCTTTCCA
CCCTTCCGTCCGATATATTCACCTTTCGTTACAGGAGTCTGACATTCATG
GTGTTGGGCTGTTTGCGATCAACGACATGGATGCTGGGGCCTTTGTCGAC
ATTTGTTGCTTCGGAACATTCGAAGTGTACGACTCTGTTCAGGAGGTGCA
TGACGCTCTGGCTGATGGCGTTCCTCGGTACATGGTGACAGCGGACGTGG
CTTCTTTGTGTGTAGCCGGTGAAGTGTCGCGGCCGAACGCCGCCCTGTTT
TTAGTCCCGCTACCTTGCAACTTTTTGTGGTACATGAACTCTTGCGGGGC
AGAACCGGATAAGACGAATGTGGTTGGAAAGACGATGTTTGAACCCAAAA
ACTGGATCTTGACAAGGGATCGACGGATGAAGGGCGTGGTGGTGGAAGAG
CCCGGAAAGGACCCATGTGGAAAGCACTGAGTCACCCACCAAACACGCTG
AGGTTCTAGCTAGGCAGAAACGTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig17601:2931..5405+

>mRNA_H-paniculata_contig17601.4188.1 ID=mRNA_H-paniculata_contig17601.4188.1|Name=mRNA_H-paniculata_contig17601.4188.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2244bp|location=Sequence derived from alignment at H-paniculata_contig17601:2931..5405+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGTGTGACAGCTCACATCTGAGAGATGTTGTGTGACAGCTCACATC
TGAGAGCTTTGCTGAAAGAGGCTGGGCTTATCATGGAGTCCGTGCCTCTC
GTCTCGCATTATGGTAACGGAAACGCGGGCCGTAAGAAAAAGAAGCAGAA
GCTCATGCTCCGCAACCAGGGCTCCATCATCCTCACAGCGCACAAAGGAG
ATGTGCTCATCTGCAACGGCGGTACCGGGTCGAGATCGACGCCTTCGGCA
GCGCGGGCGTCAAGACGCAACGCCGTCGGTTTTCCTGCTGACACCGCCTT
CAACGCAGGGGCTGTGGTATCCCAGCAGCACCCACCGAAGGGAACGTATA
TCACCGAAAACGCGGCAGAGGTTCTGATCCGACGCTTTGCTGAAAGAGGC
TGGGCTTATCATGGAGTCCGTGCCTCTCGTCTCGCATTATGGTAACGGAA
ACGCGGGCCGTAAGAAAAAGAAGCAGAAGCTCATGCTCCGCAACCAGGGC
TCCATCATCCTCACAGCGCACAAAGGAGATGTGCTCATCTGCAACGGCGG
TACCGGGTCGAGATCGACGCCTTCGGCAGCGCGGGCGTCAAGACGCAACG
CCGTCGGTTTTCCTGCTGACACCGCCTTCAACGCAGGGGCTGTGGTATCC
CAGCAGCACCCACCGAAGGGAACGTATATCACCGAAAACGCGGCAGAGGT
TCTGATCCGACGATTTACGGATGCGGGTGATGCGGTCCTATCTTCTTCCG
TTGATCGAGACAGCGACCTCTCGTGGAAGGTGCTTAAGGAGGGCCGGACC
CTTGTCGCACTCGTGCCCCAACTTTCGAGGCTCCAACCTGTAACTGATGA
CTTGGCTGCTGCCTGCCGCGAGAACACCCGGACAGGGCTGTGGTCGACGA
TGCAATCGGCGGACAAGTCCCAGAAAATGGTGGGAAGTAAACTCCTACCC
ATCAACGTCCCGGAGTCCAACGTTCGGCACTCCGTACACGAGGAGATGGC
GTCCAGACAGGACAGAGCGGATGGCTCCCCTGCCCGGCAGGTCGCCATGA
TGGCGGCTGCTGTCAAGGGCCTCGAGATAAAGATTTACGGATGCGGGTGA
TGCGGTCCTATCTTCTTCCGTTGATCGAGACAGCGACCTCTCGTGGAAGG
TGCTTAAGGAGGGCCGGACCCTTGTCGCACTCGTGCCCCAACTTTCGAGG
CTCCAACCTGTAACTGATGACTTGGCTGCTGCCTGCCGCGAGAACACCCG
GACAGGGCTGTGGTCGACGATGCAATCGGCGGACAAGTCCCAGAAAATGG
TGGGAAGTAAACTCCTACCCATCAACGTCCCGGAGTCCAACGTTCGGCAC
TCCGTACACGAGGAGATGGCGTCCAGACAGGACAGAGCGGATGGCTCCCC
TGCCCGGCAGGTCGCCATGATGGCGGCTGCTGTCAAGGGCCTCGAGATAA
AGGAGTCTGACATTCATGGTGTTGGGCTGTTTGCGATCAACGACATGGAT
GCTGGGGCCTTTGTCGACATTTGTTGCTTCGGAACATTCGAAGTGTACGA
CTCTGTTCAGGAGGTGCATGACGCTCTGGCTGATGGCGTTCCTCGGTACA
TGGTGACAGCGGACGTGGCTTCTTTGTGTGTAGCCGGTGAAGTGTCGCGG
CCGAACGCCGCCCTGTTTTTAGTCCCGCTACCTTGCAACTTTTTGTGGTA
CATGAACTCTTGCGGGGCAGAACCGGATAAGACGAATGTGGTTGGAAAGA
CGATGTTTGAACCCAAAAACTGGATCTTGACAAGGGATCGACGGATGAAG
GGCGTGGTGGTGGAAGAGCCCGGAAAGGACCCATGTGGAAAGCACTGAGA
GTCTGACATTCATGGTGTTGGGCTGTTTGCGATCAACGACATGGATGCTG
GGGCCTTTGTCGACATTTGTTGCTTCGGAACATTCGAAGTGTACGACTCT
GTTCAGGAGGTGCATGACGCTCTGGCTGATGGCGTTCCTCGGTACATGGT
GACAGCGGACGTGGCTTCTTTGTGTGTAGCCGGTGAAGTGTCGCGGCCGA
ACGCCGCCCTGTTTTTAGTCCCGCTACCTTGCAACTTTTTGTGGTACATG
AACTCTTGCGGGGCAGAACCGGATAAGACGAATGTGGTTGGAAAGACGAT
GTTTGAACCCAAAAACTGGATCTTGACAAGGGATCGACGGATGAAGGGCG
TGGTGGTGGAAGAGCCCGGAAAGGACCCATGTGGAAAGCACTGA
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