mRNA_H-paniculata_contig17560.4172.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17560.4172.1
Unique NamemRNA_H-paniculata_contig17560.4172.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17560.4172.1 vs. uniprot
Match: A0A8F0FD95_9PHAE (Cytochrome c oxidase subunit 1 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FD95_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 9.070e-25
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:    1 RWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLGNNQLYN 156
            RWLFSTNHKDIGTAYI+FGGVSGI+GTGMS+ IRIQLMSPGN FLGNNQLYN
Sbjct:   18 RWLFSTNHKDIGTAYIIFGGVSGIIGTGMSIFIRIQLMSPGNTFLGNNQLYN 69
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BLAST of mRNA_H-paniculata_contig17560.4172.1 vs. uniprot
Match: A0A8D5NJG3_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=3 Tax=Chordariaceae TaxID=66220 RepID=A0A8D5NJG3_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 5.920e-21
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 RWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLG-NNQLYN 156
            RWLFSTNHKDIGT Y++FGG SG++GT MS+LIR+QL SPGN FLG N+QLYN
Sbjct:   30 RWLFSTNHKDIGTLYLIFGGFSGVLGTAMSVLIRLQLASPGNQFLGGNHQLYN 82
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BLAST of mRNA_H-paniculata_contig17560.4172.1 vs. uniprot
Match: A0A8F0K0Q8_9PHAE (Cytochrome c oxidase subunit 1 n=5 Tax=Laminariales TaxID=2886 RepID=A0A8F0K0Q8_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.640e-19
Identity = 39/53 (73.58%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 RWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLG-NNQLYN 156
            RWLFSTNHKDIGT Y++FGG SG++GT MS+++R+QLMSPGN FLG N+QLYN
Sbjct:   29 RWLFSTNHKDIGTLYLIFGGFSGVLGTAMSVIVRLQLMSPGNQFLGGNHQLYN 81
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BLAST of mRNA_H-paniculata_contig17560.4172.1 vs. uniprot
Match: E6ZES6_ECTSI (Cytochrome c oxidase subunit 1 n=691 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES6_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 9.260e-19
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 RWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLG-NNQLYN 156
            RWLFSTNHKDIGT Y++FGG SG++GT MS+LIR+QL SPGN FLG N+QLYN
Sbjct:   30 RWLFSTNHKDIGTLYLIFGGFSGVLGTAMSVLIRLQLASPGNQFLGGNHQLYN 82
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BLAST of mRNA_H-paniculata_contig17560.4172.1 vs. uniprot
Match: A0A0S2I710_SACJA (Cytochrome c oxidase subunit 1 n=14 Tax=Saccharina japonica TaxID=88149 RepID=A0A0S2I710_SACJA)

HSP 1 Score: 87.4 bits (215), Expect = 9.290e-19
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 RWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLG-NNQLYN 156
            RWLFSTNHKDIGT Y++FGG SG++GT MS+LIR+QL SPGN FLG N+QLYN
Sbjct:   29 RWLFSTNHKDIGTLYLIFGGFSGVLGTAMSVLIRLQLASPGNQFLGGNHQLYN 81
[Close]
BLAST of mRNA_H-paniculata_contig17560.4172.1 vs. uniprot
Match: A0A2Z5XCH3_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=16 Tax=Chordariaceae TaxID=66220 RepID=A0A2Z5XCH3_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.060e-18
Identity = 39/53 (73.58%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 RWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLG-NNQLYN 156
            RWLFSTNHKDIG+ Y++FGG SG++GT MS+LIR+QL SPGN FLG N+QLYN
Sbjct:   30 RWLFSTNHKDIGSLYLIFGGFSGVLGTAMSVLIRLQLASPGNQFLGGNHQLYN 82
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BLAST of mRNA_H-paniculata_contig17560.4172.1 vs. uniprot
Match: Q2TUB0_DICDH (Cytochrome c oxidase subunit 1 n=32 Tax=Phaeophyceae TaxID=2870 RepID=Q2TUB0_DICDH)

HSP 1 Score: 86.3 bits (212), Expect = 2.330e-18
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 RWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLGNN-QLYN 156
            RWLFSTNHKDIGT Y++FGG SG++GTGMS+LIR+QL SP N FL NN QLYN
Sbjct:   28 RWLFSTNHKDIGTLYLLFGGFSGVLGTGMSVLIRLQLASPSNQFLSNNHQLYN 80
[Close]
BLAST of mRNA_H-paniculata_contig17560.4172.1 vs. uniprot
Match: A0A5K7TLP3_9PHAE (Cytochrome c oxidase subunit 1 n=55 Tax=Phaeophyceae TaxID=2870 RepID=A0A5K7TLP3_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.420e-18
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 RWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLG-NNQLYN 156
            RWLFSTNHKDIGT Y++FGG SG++GT MS+LIR+QL SPGN FLG N+QLYN
Sbjct:   34 RWLFSTNHKDIGTLYLIFGGFSGVLGTTMSVLIRLQLASPGNDFLGGNHQLYN 86
[Close]
BLAST of mRNA_H-paniculata_contig17560.4172.1 vs. uniprot
Match: A0A7S1BPC9_9STRA (Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BPC9_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.160e-18
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    1 RWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFL-GNNQLYN 156
            RWLFSTNHKDIGT Y++FG  SG+ GT +S+LIR++LM PGN+ L GN+QLYN
Sbjct:    6 RWLFSTNHKDIGTLYLIFGAFSGVAGTTLSVLIRMELMQPGNLILSGNHQLYN 58
[Close]
BLAST of mRNA_H-paniculata_contig17560.4172.1 vs. uniprot
Match: K9ZWM2_9STRA (Cytochrome c oxidase subunit 1 n=17 Tax=Ochrophyta TaxID=2696291 RepID=K9ZWM2_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 4.350e-18
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 RWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFL-GNNQLYN 156
            RWLFSTNHKDIGT Y++FGGV+GI GT +S+LIR++L  PGN FL GNNQLYN
Sbjct:   20 RWLFSTNHKDIGTLYLIFGGVAGIAGTTLSVLIRLELAQPGNQFLSGNNQLYN 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17560.4172.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0FD95_9PHAE9.070e-2590.38Cytochrome c oxidase subunit 1 n=1 Tax=Protohalopt... [more]
A0A8D5NJG3_9PHAE5.920e-2175.47Cytochrome c oxidase subunit 1 (Fragment) n=3 Tax=... [more]
A0A8F0K0Q8_9PHAE3.640e-1973.58Cytochrome c oxidase subunit 1 n=5 Tax=Laminariale... [more]
E6ZES6_ECTSI9.260e-1975.47Cytochrome c oxidase subunit 1 n=691 Tax=Phaeophyc... [more]
A0A0S2I710_SACJA9.290e-1975.47Cytochrome c oxidase subunit 1 n=14 Tax=Saccharina... [more]
A0A2Z5XCH3_9PHAE1.060e-1873.58Cytochrome c oxidase subunit 1 (Fragment) n=16 Tax... [more]
Q2TUB0_DICDH2.330e-1875.47Cytochrome c oxidase subunit 1 n=32 Tax=Phaeophyce... [more]
A0A5K7TLP3_9PHAE2.420e-1875.47Cytochrome c oxidase subunit 1 n=55 Tax=Phaeophyce... [more]
A0A7S1BPC9_9STRA3.160e-1867.92Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=... [more]
K9ZWM2_9STRA4.350e-1873.58Cytochrome c oxidase subunit 1 n=17 Tax=Ochrophyta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17560contigH-paniculata_contig17560:4688..4858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score75.9
Seed ortholog evalue6.9e-12
Seed eggNOG ortholog218851.Aquca_023_00094.1
Preferred namecox1
KEGG koko:K02256
KEGG TC3.D.4.11,3.D.4.7,3.D.4.8
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00154
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0006091,GO:0006119,GO:0006123,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015672,GO:0015980,GO:0015988,GO:0015990,GO:0016310,GO:0017144,GO:0019637,GO:0019646,GO:0019693,GO:0022900,GO:0022904,GO:0034220,GO:0034641,GO:0042773,GO:0042775,GO:0044237,GO:0044238,GO:0044281,GO:0045333,GO:0046034,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0098655,GO:0098660,GO:0098662,GO:1901135,GO:1901360,GO:1901564,GO:1902600
EggNOG free text desc.Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
EggNOG OGs37QZZ@33090,3GEEJ@35493,COG0843@1,KOG4769@2759
EC1.9.3.1
COG Functional cat.C
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929377.031874-CDS-H-paniculata_contig17560:4687..48581622929377.031874-CDS-H-paniculata_contig17560:4687..4858Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17560 4688..4858 -
1691480837.0582573-CDS-H-paniculata_contig17560:4687..48581691480837.0582573-CDS-H-paniculata_contig17560:4687..4858Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17560 4688..4858 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17560.4172.1prot_H-paniculata_contig17560.4172.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17560 4688..4858 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17560.4172.1

>prot_H-paniculata_contig17560.4172.1 ID=prot_H-paniculata_contig17560.4172.1|Name=mRNA_H-paniculata_contig17560.4172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
RWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLGNNQL
YNGAPSH
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mRNA from alignment at H-paniculata_contig17560:4688..4858-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17560.4172.1 ID=mRNA_H-paniculata_contig17560.4172.1|Name=mRNA_H-paniculata_contig17560.4172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=171bp|location=Sequence derived from alignment at H-paniculata_contig17560:4688..4858- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATGGTTGTTTTCGACTAATCATAAAGATATTGGGACAGCTTACATTGT
TTTTGGGGGTGTCTCTGGTATTGTTGGAACTGGTATGTCTATGCTTATTC
GTATTCAATTAATGTCACCTGGAAATGTTTTTTTAGGTAATAATCAATTA
TATAACGGTGCGCCGTCTCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig17560:4688..4858-

>mRNA_H-paniculata_contig17560.4172.1 ID=mRNA_H-paniculata_contig17560.4172.1|Name=mRNA_H-paniculata_contig17560.4172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig17560:4688..4858- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATGGTTGTTTTCGACTAATCATAAAGATATTGGGACAGCTTACATTGT
TTTTGGGGGTGTCTCTGGTATTGTTGGAACTGGTATGTCTATGCTTATTC
GTATTCAATTAATGTCACCTGGAAATGTTTTTTTAGGTAATAATCAATTA
TATAACGGTGCGCCGTCTCACAGATGGTTGTTTTCGACTAATCATAAAGA
TATTGGGACAGCTTACATTGTTTTTGGGGGTGTCTCTGGTATTGTTGGAA
CTGGTATGTCTATGCTTATTCGTATTCAATTAATGTCACCTGGAAATGTT
TTTTTAGGTAATAATCAATTATATAACGGTGCGCCGTCTCAC
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