mRNA_H-paniculata_contig1756.4167.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1756.4167.1
Unique NamemRNA_H-paniculata_contig1756.4167.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1756.4167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1756contigH-paniculata_contig1756:5222..5897 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size676
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1756.4167.1prot_H-paniculata_contig1756.4167.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1756 5378..5878 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929376.7782977-UTR-H-paniculata_contig1756:5221..53771622929376.7782977-UTR-H-paniculata_contig1756:5221..5377Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1756 5222..5377 +
1691480836.932395-UTR-H-paniculata_contig1756:5221..53771691480836.932395-UTR-H-paniculata_contig1756:5221..5377Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1756 5222..5377 +
1622929376.8064592-UTR-H-paniculata_contig1756:5878..58971622929376.8064592-UTR-H-paniculata_contig1756:5878..5897Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1756 5879..5897 +
1691480836.9515224-UTR-H-paniculata_contig1756:5878..58971691480836.9515224-UTR-H-paniculata_contig1756:5878..5897Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1756 5879..5897 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929376.790812-CDS-H-paniculata_contig1756:5377..58781622929376.790812-CDS-H-paniculata_contig1756:5377..5878Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1756 5378..5878 +
1691480836.9426355-CDS-H-paniculata_contig1756:5377..58781691480836.9426355-CDS-H-paniculata_contig1756:5377..5878Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1756 5378..5878 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1756.4167.1

>prot_H-paniculata_contig1756.4167.1 ID=prot_H-paniculata_contig1756.4167.1|Name=mRNA_H-paniculata_contig1756.4167.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=167bp
MKTATAAVAAPATLEAEGQEDLPAALLVRPGMSLVTGRGMEQGNYGRRKT
PKAATVEGVAKEAVAQVMPTASETKQRLESTWTPRGGPPAAQTPKDRDEW
GTGMTSGVGKKTAVIAQEAETASARKTAAAQMKADAGAETEMVWGESAAA
DLKAEEQEEAVAPPRV*
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mRNA from alignment at H-paniculata_contig1756:5222..5897+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1756.4167.1 ID=mRNA_H-paniculata_contig1756.4167.1|Name=mRNA_H-paniculata_contig1756.4167.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=676bp|location=Sequence derived from alignment at H-paniculata_contig1756:5222..5897+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGGGGGAGTGTGGATCGAGGATAACGGAGGGACTACTGATTGGAGAGG
TGGAGATAGCAGCAGCGACGTCGGCACCTTTGGTGGCGCAGGAGCCGGCG
AAGGTCGTGGAAACATCAGCGGATCAGGCGGCCGCGATGAAAGCGGAGGA
AGTACGATGAAGACGGCCACGGCGGCGGTAGCGGCGCCGGCGACCTTGGA
GGCGGAGGGTCAGGAAGACCTACCAGCCGCGCTGCTGGTGCGACCGGGCA
TGTCGCTGGTGACGGGGAGAGGAATGGAACAAGGGAACTACGGAAGACGG
AAGACCCCGAAAGCGGCAACGGTGGAGGGAGTTGCGAAGGAAGCGGTGGC
GCAGGTAATGCCGACGGCTTCAGAAACGAAGCAGAGGCTGGAGTCAACGT
GGACACCGCGGGGTGGACCGCCCGCGGCGCAGACGCCGAAGGACAGGGAC
GAGTGGGGGACAGGGATGACATCGGGAGTGGGGAAGAAGACGGCGGTGAT
AGCACAAGAGGCGGAAACGGCATCAGCACGGAAGACCGCGGCCGCACAGA
TGAAGGCAGACGCAGGAGCAGAGACGGAGATGGTGTGGGGGGAGTCGGCG
GCGGCGGATTTGAAAGCGGAGGAACAAGAGGAGGCAGTGGCGCCGCCGCG
GGTTTAACCCGGGGTGAATACGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1756:5222..5897+

>mRNA_H-paniculata_contig1756.4167.1 ID=mRNA_H-paniculata_contig1756.4167.1|Name=mRNA_H-paniculata_contig1756.4167.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at H-paniculata_contig1756:5222..5897+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGACGGCCACGGCGGCGGTAGCGGCGCCGGCGACCTTGGAGGCGGA
GGGTCAGGAAGACCTACCAGCCGCGCTGCTGGTGCGACCGGGCATGTCGC
TGGTGACGGGGAGAGGAATGGAACAAGGGAACTACGGAAGACGGAAGACC
CCGAAAGCGGCAACGGTGGAGGGAGTTGCGAAGGAAGCGGTGGCGCAGGT
AATGCCGACGGCTTCAGAAACGAAGCAGAGGCTGGAGTCAACGTGGACAC
CGCGGGGTGGACCGCCCGCGGCGCAGACGCCGAAGGACAGGGACGAGTGG
GGGACAGGGATGACATCGGGAGTGGGGAAGAAGACGGCGGTGATAGCACA
AGAGGCGGAAACGGCATCAGCACGGAAGACCGCGGCCGCACAGATGAAGG
CAGACGCAGGAGCAGAGACGGAGATGGTGTGGGGGGAGTCGGCGGCGGCG
GATTTGAAAGCGGAGGAACAAGAGGAGGCAGTGGCGCCGCCGCGGGTTTA
AATGAAGACGGCCACGGCGGCGGTAGCGGCGCCGGCGACCTTGGAGGCGG
AGGGTCAGGAAGACCTACCAGCCGCGCTGCTGGTGCGACCGGGCATGTCG
CTGGTGACGGGGAGAGGAATGGAACAAGGGAACTACGGAAGACGGAAGAC
CCCGAAAGCGGCAACGGTGGAGGGAGTTGCGAAGGAAGCGGTGGCGCAGG
TAATGCCGACGGCTTCAGAAACGAAGCAGAGGCTGGAGTCAACGTGGACA
CCGCGGGGTGGACCGCCCGCGGCGCAGACGCCGAAGGACAGGGACGAGTG
GGGGACAGGGATGACATCGGGAGTGGGGAAGAAGACGGCGGTGATAGCAC
AAGAGGCGGAAACGGCATCAGCACGGAAGACCGCGGCCGCACAGATGAAG
GCAGACGCAGGAGCAGAGACGGAGATGGTGTGGGGGGAGTCGGCGGCGGC
GGATTTGAAAGCGGAGGAACAAGAGGAGGCAGTGGCGCCGCCGCGGGTTT
AA
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