mRNA_H-paniculata_contig1756.4166.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1756.4166.1
Unique NamemRNA_H-paniculata_contig1756.4166.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1756.4166.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1756contigH-paniculata_contig1756:1684..2751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1070
Cds size678
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929376.7164886-UTR-H-paniculata_contig1756:1683..20731622929376.7164886-UTR-H-paniculata_contig1756:1683..2073Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1756 1684..2073 +
1691480836.9079616-UTR-H-paniculata_contig1756:1683..20731691480836.9079616-UTR-H-paniculata_contig1756:1683..2073Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1756 1684..2073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929376.7324524-CDS-H-paniculata_contig1756:2073..27511622929376.7324524-CDS-H-paniculata_contig1756:2073..2751Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1756 2074..2751 +
1691480836.9197047-CDS-H-paniculata_contig1756:2073..27511691480836.9197047-CDS-H-paniculata_contig1756:2073..2751Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1756 2074..2751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1756.4166.1prot_H-paniculata_contig1756.4166.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1756 2074..2751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1756.4166.1

>prot_H-paniculata_contig1756.4166.1 ID=prot_H-paniculata_contig1756.4166.1|Name=mRNA_H-paniculata_contig1756.4166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=226bp
MGSSRTNAALGRLTQNHVTGESLRAEMDSKLRLNDVAQSRDGMLVARRAT
PPHDTATEEGGPTTCPTVRDPIGGTATASVTTAAPRVATATDDERPLVRQ
VRVEEVVGGTSAATTDGSEEQVMGLAGASSGGTVASGICNPPNGWASHAD
GPRRRDQRRGGNSGGETTTSGAWNAGSGGSNCYKLHASPHGPGGDRVWFF
RRSWGSRESKTRRRVRWIGRFRGWKW
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mRNA from alignment at H-paniculata_contig1756:1684..2751+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1756.4166.1 ID=mRNA_H-paniculata_contig1756.4166.1|Name=mRNA_H-paniculata_contig1756.4166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1068bp|location=Sequence derived from alignment at H-paniculata_contig1756:1684..2751+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTACCGGGGGCGCTATCGGTATAGTTATGGCTGAACGAAAGAAGCGCCC
TTTTCCCCTCGCGCCCTCTCAGATGCAGCAGCAGCTCACGGGAAGTAATG
GGCTATCAAATGAAGGAATGCCTACTCCTGAGGAAGGACGCATTTCATCA
CGAACGAGGTCTCGGACATACGCGCACGCAATGCCCCCCTCTGTCTCGCT
GACTCGGTGCCCGCCGTCGCAACCCGCCTCGCCGACGGAATTGCCGCAGT
CACCGACTGCCGCCCCGGATACACGAGAGGCCGCAACCACACAGAGACCG
GCGGACGCGGCCGTTGACCAAGGACGGACAACGCTGGTGACCACTAGTGG
GACAGTAGCTAGAGCGGCGGACGCCCAAAGGGGGTAAGCGATGGGATCGA
GTAGGACGAACGCGGCACTTGGACGACTCACGCAAAATCATGTAACGGGG
GAGTCGCTACGAGCGGAAATGGATTCGAAACTTCGGCTGAATGACGTCGC
GCAGAGTCGAGATGGAATGTTAGTGGCCAGACGAGCGACGCCACCGCATG
ATACTGCGACGGAGGAAGGAGGACCGACGACTTGTCCCACGGTACGGGAC
CCTATCGGGGGGACTGCGACTGCGTCGGTGACAACAGCTGCACCCCGGGT
TGCTACAGCCACGGATGACGAACGCCCTTTAGTGAGGCAGGTGCGTGTTG
AAGAGGTGGTCGGCGGTACATCTGCAGCCACGACCGACGGTAGCGAGGAG
CAGGTGATGGGGCTGGCAGGGGCGAGCAGCGGTGGAACGGTGGCAAGCGG
CATCTGCAATCCGCCGAACGGGTGGGCCTCCCACGCCGATGGCCCACGGC
GGAGGGACCAACGACGAGGGGGTAATAGCGGAGGCGAAACCACCACCAGC
GGCGCATGGAATGCAGGAAGTGGGGGAAGTAACTGCTACAAACTGCACGC
CAGTCCGCATGGTCCAGGAGGCGACAGGGTTTGGTTTTTCCGTCGATCGT
GGGGAAGTAGGGAGTCAAAGACGCGACGACGGGTGCGATGGATTGGTAGA
TTCAGAGGATGGAAGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1756:1684..2751+

>mRNA_H-paniculata_contig1756.4166.1 ID=mRNA_H-paniculata_contig1756.4166.1|Name=mRNA_H-paniculata_contig1756.4166.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1356bp|location=Sequence derived from alignment at H-paniculata_contig1756:1684..2751+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGATCGAGTAGGACGAACGCGGCACTTGGACGACTCACGCAAAATCA
TGTAACGGGGGAGTCGCTACGAGCGGAAATGGATTCGAAACTTCGGCTGA
ATGACGTCGCGCAGAGTCGAGATGGAATGTTAGTGGCCAGACGAGCGACG
CCACCGCATGATACTGCGACGGAGGAAGGAGGACCGACGACTTGTCCCAC
GGTACGGGACCCTATCGGGGGGACTGCGACTGCGTCGGTGACAACAGCTG
CACCCCGGGTTGCTACAGCCACGGATGACGAACGCCCTTTAGTGAGGCAG
GTGCGTGTTGAAGAGGTGGTCGGCGGTACATCTGCAGCCACGACCGACGG
TAGCGAGGAGCAGGTGATGGGGCTGGCAGGGGCGAGCAGCGGTGGAACGG
TGGCAAGCGGCATCTGCAATCCGCCGAACGGGTGGGCCTCCCACGCCGAT
GGCCCACGGCGGAGGGACCAACGACGAGGGGGTAATAGCGGAGGCGAAAC
CACCACCAGCGGCGCATGGAATGCAGGAAGTGGGGGAAGTAACTGCTACA
AACTGCACGCCAGTCCGCATGGTCCAGGAGGCGACAGGGTTTGGTTTTTC
CGTCGATCGTGGGGAAGTAGGGAGTCAAAGACGCGACGACGGGTGCGATG
GATTGGTAGATTCAGAGGATGGAAGTGGATGGGATCGAGTAGGACGAACG
CGGCACTTGGACGACTCACGCAAAATCATGTAACGGGGGAGTCGCTACGA
GCGGAAATGGATTCGAAACTTCGGCTGAATGACGTCGCGCAGAGTCGAGA
TGGAATGTTAGTGGCCAGACGAGCGACGCCACCGCATGATACTGCGACGG
AGGAAGGAGGACCGACGACTTGTCCCACGGTACGGGACCCTATCGGGGGG
ACTGCGACTGCGTCGGTGACAACAGCTGCACCCCGGGTTGCTACAGCCAC
GGATGACGAACGCCCTTTAGTGAGGCAGGTGCGTGTTGAAGAGGTGGTCG
GCGGTACATCTGCAGCCACGACCGACGGTAGCGAGGAGCAGGTGATGGGG
CTGGCAGGGGCGAGCAGCGGTGGAACGGTGGCAAGCGGCATCTGCAATCC
GCCGAACGGGTGGGCCTCCCACGCCGATGGCCCACGGCGGAGGGACCAAC
GACGAGGGGGTAATAGCGGAGGCGAAACCACCACCAGCGGCGCATGGAAT
GCAGGAAGTGGGGGAAGTAACTGCTACAAACTGCACGCCAGTCCGCATGG
TCCAGGAGGCGACAGGGTTTGGTTTTTCCGTCGATCGTGGGGAAGTAGGG
AGTCAAAGACGCGACGACGGGTGCGATGGATTGGTAGATTCAGAGGATGG
AAGTGG
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