mRNA_H-paniculata_contig1756.4170.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1756.4170.1
Unique NamemRNA_H-paniculata_contig1756.4170.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1756.4170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1756contigH-paniculata_contig1756:21745..23092 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size471
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1756.4170.1prot_H-paniculata_contig1756.4170.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1756 21779..23066 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929376.5950582-UTR-H-paniculata_contig1756:21744..217781622929376.5950582-UTR-H-paniculata_contig1756:21744..21778Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1756 21745..21778 -
1691480836.8536608-UTR-H-paniculata_contig1756:21744..217781691480836.8536608-UTR-H-paniculata_contig1756:21744..21778Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1756 21745..21778 -
1622929376.6621406-UTR-H-paniculata_contig1756:23066..230921622929376.6621406-UTR-H-paniculata_contig1756:23066..23092Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1756 23067..23092 -
1691480836.8989038-UTR-H-paniculata_contig1756:23066..230921691480836.8989038-UTR-H-paniculata_contig1756:23066..23092Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1756 23067..23092 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929376.6169727-CDS-H-paniculata_contig1756:21778..220061622929376.6169727-CDS-H-paniculata_contig1756:21778..22006Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1756 21779..22006 -
1691480836.8661525-CDS-H-paniculata_contig1756:21778..220061691480836.8661525-CDS-H-paniculata_contig1756:21778..22006Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1756 21779..22006 -
1622929376.632194-CDS-H-paniculata_contig1756:22380..225001622929376.632194-CDS-H-paniculata_contig1756:22380..22500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1756 22381..22500 -
1691480836.880422-CDS-H-paniculata_contig1756:22380..225001691480836.880422-CDS-H-paniculata_contig1756:22380..22500Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1756 22381..22500 -
1622929376.6454031-CDS-H-paniculata_contig1756:23003..230661622929376.6454031-CDS-H-paniculata_contig1756:23003..23066Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1756 23004..23066 -
1691480836.8904986-CDS-H-paniculata_contig1756:23003..230661691480836.8904986-CDS-H-paniculata_contig1756:23003..23066Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1756 23004..23066 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1756.4170.1

>prot_H-paniculata_contig1756.4170.1 ID=prot_H-paniculata_contig1756.4170.1|Name=mRNA_H-paniculata_contig1756.4170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
MDEGARGKIGMAGFDQYLEDAKRECIARGQHVEDIPHIKQVIAQYMDRLG
VKDDQEYVTLKDMIKLGNVTPTGRFFEELFSGTDMEARQYIQDSGIGFST
SSPLPVSMLLGNDVYPNSALEFERELAEISGCFIQN*
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mRNA from alignment at H-paniculata_contig1756:21745..23092-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1756.4170.1 ID=mRNA_H-paniculata_contig1756.4170.1|Name=mRNA_H-paniculata_contig1756.4170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1348bp|location=Sequence derived from alignment at H-paniculata_contig1756:21745..23092- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGACGTGAAGTACTGCTTTAATGTGATGGACGAGGGTGCAAGGGGGAAG
ATCGGAATGGCGGGCTTCGACCAGTATTTGGAAGATGCGGTGAGAAAGCA
AGCCGGGGTTTTCATGGTGTGAGACGCGAGGTGTTGGTATACTGCGAGGT
GGGGCGTGGAGTTTGAGTTCGGTGTTTTTTCGTGTGTTTTTGCTGCTGGT
CTTGTGCTGTCCCCCCGAGAGCATAACATAGTGGCGCGCTTGTACTAGAA
TACTTGGTTGCCCTTCACATGCTTTGGAGCTGCAGCGCTTTCCGTCGAAT
CTTGTTGAGGAAGGCTTCGAGCTCTAGGGCTGACACGTTTGGTGGGAGAG
CGCGTTGCAGGGCTCAAAACCCACCGGAGTAACAGCCCACAACAGGCGAG
ACGTGTGCGGACGTTCCACTGTACATGCAGGCACCTAAATGCGTAGAGTT
GCACCAATCCACACCAGCGCGGCCAGCGGCACCAACGTGATGTCCTGTGT
AAACCGGGTTAACCCTTTCCCTTCACGCGTAGCCTTAGCCTTGATAATGC
TCCCTTATACTGATTACATTCGCGTTCTTTGACAACCGACAGAAGAGGGA
GTGCATAGCACGGGGACAACATGTTGAGGATATCCCGCACATCAAGCAAG
TTATTGCACAGTACATGGATCGGCTCGGCGTGAAGGACGATCAGGAGTAT
GTAACCCTGAAGGTGAGCGAGTACTTGAGTTTTTGTGTGTTGCTAGTGTA
ATCTACGAAGGCTGTAGCTGGGTGGATGTACTTCATAAAGTCAAGGTCTT
GAAATCGGAAGTAGAAATTTCATTACTTCCCAGAGAGGCTGTTCGTCGAC
TCGACTGACAGCCTTTATTTTTGTCATGATATTGAAACACTATTTGACGA
ATCTCTCTGACAACGCATATACGCATAGAGTTGGGCAGCTATCACACATT
GAGAGTGTGATTGACAAACTCCATGCACGTACAACGTGCACCAAACAAGT
AAACGTTCTACAACGCAATGCAGTAGATTAAACCATATATTTCCAGGCTT
CGTTCTCGTCCGCCGCTAATCGTTTTCTGCTCTCAGGATATGATCAAACT
CGGAAATGTGACGCCAACGGGTAGGTTCTTCGAAGAGCTGTTTTCCGGCA
CAGACATGGAGGCCCGTCAGTACATCCAGGACTCTGGGATTGGGTTTTCG
ACCTCGTCGCCACTACCTGTGTCTATGCTGCTGGGCAACGACGTGTACCC
GAATTCTGCCCTTGAGTTTGAAAGGGAACTGGCGGAGATTTCTGGTTGTT
TTATTCAGAATTGATCAAACGTCTGGATGGATTAGTCCGTGTGTCCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1756:21745..23092-

>mRNA_H-paniculata_contig1756.4170.1 ID=mRNA_H-paniculata_contig1756.4170.1|Name=mRNA_H-paniculata_contig1756.4170.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig1756:21745..23092- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACGAGGGTGCAAGGGGGAAGATCGGAATGGCGGGCTTCGACCAGTA
TTTGGAAGATGCGATGGACGAGGGTGCAAGGGGGAAGATCGGAATGGCGG
GCTTCGACCAGTATTTGGAAGATGCGAAGAGGGAGTGCATAGCACGGGGA
CAACATGTTGAGGATATCCCGCACATCAAGCAAGTTATTGCACAGTACAT
GGATCGGCTCGGCGTGAAGGACGATCAGGAGTATGTAACCCTGAAGAAGA
GGGAGTGCATAGCACGGGGACAACATGTTGAGGATATCCCGCACATCAAG
CAAGTTATTGCACAGTACATGGATCGGCTCGGCGTGAAGGACGATCAGGA
GTATGTAACCCTGAAGGATATGATCAAACTCGGAAATGTGACGCCAACGG
GTAGGTTCTTCGAAGAGCTGTTTTCCGGCACAGACATGGAGGCCCGTCAG
TACATCCAGGACTCTGGGATTGGGTTTTCGACCTCGTCGCCACTACCTGT
GTCTATGCTGCTGGGCAACGACGTGTACCCGAATTCTGCCCTTGAGTTTG
AAAGGGAACTGGCGGAGATTTCTGGTTGTTTTATTCAGAATTGAGATATG
ATCAAACTCGGAAATGTGACGCCAACGGGTAGGTTCTTCGAAGAGCTGTT
TTCCGGCACAGACATGGAGGCCCGTCAGTACATCCAGGACTCTGGGATTG
GGTTTTCGACCTCGTCGCCACTACCTGTGTCTATGCTGCTGGGCAACGAC
GTGTACCCGAATTCTGCCCTTGAGTTTGAAAGGGAACTGGCGGAGATTTC
TGGTTGTTTTATTCAGAATTGA
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