prot_H-paniculata_contig17551.4164.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig17551.4164.1
Unique Nameprot_H-paniculata_contig17551.4164.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length840
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17551.4164.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 389..423
e-value: 2.1E-7
score: 28.7
coord: 600..633
e-value: 7.2E-6
score: 23.8
coord: 670..702
e-value: 6.0E-5
score: 21.0
coord: 424..457
e-value: 1.3E-7
score: 29.3
coord: 635..668
e-value: 1.5E-4
score: 19.7
coord: 779..811
e-value: 6.3E-4
score: 17.8
coord: 495..527
e-value: 4.0E-6
score: 24.7
coord: 459..493
e-value: 4.0E-6
score: 24.7
coord: 529..562
e-value: 0.0012
score: 16.8
coord: 320..353
e-value: 2.2E-4
score: 19.2
coord: 564..598
e-value: 4.3E-5
score: 21.4
coord: 249..278
e-value: 5.7E-7
score: 27.3
coord: 285..316
e-value: 1.1E-6
score: 26.5
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 389..418
e-value: 5.5E-4
score: 20.0
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 655..715
e-value: 4.0E-4
score: 20.4
coord: 764..819
e-value: 2.5E-4
score: 21.1
coord: 515..573
e-value: 1.1E-8
score: 35.0
coord: 585..643
e-value: 1.3E-7
score: 31.6
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 421..468
e-value: 1.7E-10
score: 40.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 702..739
score: 6.588
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 387..421
score: 11.301
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 317..351
score: 8.934
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 282..316
score: 11.203
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 776..810
score: 10.424
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 457..491
score: 10.556
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 632..666
score: 10.622
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 422..456
score: 12.288
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 492..526
score: 11.027
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 247..281
score: 11.235
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 352..386
score: 9.712
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 667..701
score: 11.115
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 597..631
score: 10.556
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 527..561
score: 11.553
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 212..246
score: 7.596
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 562..596
score: 9.854
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 740..775
score: 8.769
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 224..381
e-value: 1.0E-9
score: 38.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 358..468
e-value: 5.2E-33
score: 115.9
coord: 469..573
e-value: 3.1E-30
score: 106.9
coord: 574..715
e-value: 2.7E-28
score: 100.5
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 723..828
e-value: 2.0E-18
score: 68.8
coord: 175..349
e-value: 4.4E-36
score: 126.8
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 696..820
coord: 215..326
coord: 549..724
coord: 395..570
coord: 285..415
NoneNo IPR availablePRODOMPD104036coord: 474..569
e-value: 0.001
score: 105.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17551contigH-paniculata_contig17551:1606..4125 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17551.4164.1mRNA_H-paniculata_contig17551.4164.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig17551 343..4731 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig17551.4164.1 ID=prot_H-paniculata_contig17551.4164.1|Name=mRNA_H-paniculata_contig17551.4164.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=840bp
MTFFYVARAAQRSVYTIGRLSRFYRLRSPAHLERTAGISSCRCCGRGADI
FSDVPNIKEQSFSAVAPLHPTQCDREQPGPPPCPRIDKDGGDGVVGQMPA
VSEAGGFDRAKQSGAEEGGGKRGGLGVGESGSISERVATPFEDGDMGLRV
GGAQVSSVAKQTDDQYVPAEVRTLQTEIMRNLKNAGDRKDWVRADRILKD
ALVHPEWKVLVHDKMYGATIAVFAKCQKWQIALEVLDAMDLNGTHPTVVV
YNSVIQACCNGGQWDQAVAILKRMQTEGTARSTGSYHTLLKMCARNGQWE
QVLDILGQMHAEGLVPHLSTCNAAIKACGDASHWQQALVVLGQMQAMGTA
PDVVSYNRAMKACGDHGRWKRVLTLLRTMRNGHTAPDVVSYNIAMNACGR
ARQWKQVVSLMRQMREDQIVPDIVSYNTAMKACGDGGQLDKALDFLRQMR
VEGVTPTVITYTTAINVCRNGGRWEQALGILVQMQAEGVAPNIATYNSAI
TACGNGGNWEKSLDLLRKMEVNQIQPDMVSYNAAMKACRDSGQWKPALGL
LQKMRSDGVPPGVVTYDMAIGACRKDGQWRHALDILLHLQEEGIKPDVAL
YTTAMILCVENGQWEQALDVWKRLQAEGITPDVASYNRAMEACAVGGQWQ
QTLLLWQQMLSQGVEPNAKSYAAAIAACGSGGQWQQALDLLRRMNRQGFV
PGVAEFNMAIAICVDFGRWEEALGAFDLLRETQATGNKPNAASFKLAMDA
CAGGGQWEKALHLLLTEMPANRIMPDVGSYNTVATICGNAGRWDRTLDIL
RRMGSENITPSPASFNAAIFALTLSPKYGGRGGGETLDS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long
IPR011990TPR-like_helical_dom_sf