mRNA_H-paniculata_contig1754.4161.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1754.4161.1
Unique NamemRNA_H-paniculata_contig1754.4161.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1754.4161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1754contigH-paniculata_contig1754:17649..18226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size579
Cds size576
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929375.9938595-CDS-H-paniculata_contig1754:17648..182241622929375.9938595-CDS-H-paniculata_contig1754:17648..18224Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1754 17649..18224 +
1691480836.596345-CDS-H-paniculata_contig1754:17648..182241691480836.596345-CDS-H-paniculata_contig1754:17648..18224Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1754 17649..18224 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1754.4161.1prot_H-paniculata_contig1754.4161.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1754 17649..18224 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1754.4161.1

>prot_H-paniculata_contig1754.4161.1 ID=prot_H-paniculata_contig1754.4161.1|Name=mRNA_H-paniculata_contig1754.4161.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=192bp
PTEAKAKQRRSASQDSGHESDIVVAFSSSASPPPPPPPLSVAVSEHVDEG
EQRNARRLEKYGDEMRDTDDSPCEGISTEQCQDEMMPTTTGTSFASLADD
AQAFGPSAESFTRKADEKLMTAAGCGVGKPSTASAAAVEETAVVPTAEDG
QTSVVVVVTCEMESLSEQEQAKVYEDKGLNPIVADKMRQERE
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mRNA from alignment at H-paniculata_contig1754:17649..18226+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1754.4161.1 ID=mRNA_H-paniculata_contig1754.4161.1|Name=mRNA_H-paniculata_contig1754.4161.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=578bp|location=Sequence derived from alignment at H-paniculata_contig1754:17649..18226+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAACTGAAGCCAAGGCGAAGCAGCGAAGGAGTGCCTCCCAGGACAGCGG
TCACGAAAGCGATATAGTGGTTGCCTTCTCGTCATCTGCATCGCCGCCGC
CGCCGCCGCCGCCGCTGTCGGTCGCCGTCAGCGAACATGTGGATGAAGGG
GAGCAAAGAAACGCCCGCAGGTTGGAGAAATATGGCGATGAAATGCGAGA
CACTGATGACAGCCCGTGCGAAGGTATCAGCACGGAACAGTGCCAGGACG
AGATGATGCCGACGACGACAGGGACCTCCTTTGCTTCCTTGGCTGATGAC
GCCCAAGCTTTCGGACCTTCGGCTGAGAGTTTCACAAGAAAGGCTGACGA
GAAGTTGATGACTGCTGCGGGTTGTGGTGTCGGGAAGCCTTCAACCGCCT
CCGCCGCCGCCGTAGAGGAGACCGCGGTAGTACCGACAGCCGAAGATGGT
CAAACATCGGTCGTGGTGGTTGTGACATGCGAAATGGAGTCGCTCTCGGA
GCAAGAGCAGGCAAAGGTATATGAAGACAAAGGTTTAAACCCGATAGTGG
CAGACAAGATGCGGCAGGAAAGAGAAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1754:17649..18226+

>mRNA_H-paniculata_contig1754.4161.1 ID=mRNA_H-paniculata_contig1754.4161.1|Name=mRNA_H-paniculata_contig1754.4161.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1152bp|location=Sequence derived from alignment at H-paniculata_contig1754:17649..18226+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAACTGAAGCCAAGGCGAAGCAGCGAAGGAGTGCCTCCCAGGACAGCGG
TCACGAAAGCGATATAGTGGTTGCCTTCTCGTCATCTGCATCGCCGCCGC
CGCCGCCGCCGCCGCTGTCGGTCGCCGTCAGCGAACATGTGGATGAAGGG
GAGCAAAGAAACGCCCGCAGGTTGGAGAAATATGGCGATGAAATGCGAGA
CACTGATGACAGCCCGTGCGAAGGTATCAGCACGGAACAGTGCCAGGACG
AGATGATGCCGACGACGACAGGGACCTCCTTTGCTTCCTTGGCTGATGAC
GCCCAAGCTTTCGGACCTTCGGCTGAGAGTTTCACAAGAAAGGCTGACGA
GAAGTTGATGACTGCTGCGGGTTGTGGTGTCGGGAAGCCTTCAACCGCCT
CCGCCGCCGCCGTAGAGGAGACCGCGGTAGTACCGACAGCCGAAGATGGT
CAAACATCGGTCGTGGTGGTTGTGACATGCGAAATGGAGTCGCTCTCGGA
GCAAGAGCAGGCAAAGGTATATGAAGACAAAGGTTTAAACCCGATAGTGG
CAGACAAGATGCGGCAGGAAAGAGAACCAACTGAAGCCAAGGCGAAGCAG
CGAAGGAGTGCCTCCCAGGACAGCGGTCACGAAAGCGATATAGTGGTTGC
CTTCTCGTCATCTGCATCGCCGCCGCCGCCGCCGCCGCCGCTGTCGGTCG
CCGTCAGCGAACATGTGGATGAAGGGGAGCAAAGAAACGCCCGCAGGTTG
GAGAAATATGGCGATGAAATGCGAGACACTGATGACAGCCCGTGCGAAGG
TATCAGCACGGAACAGTGCCAGGACGAGATGATGCCGACGACGACAGGGA
CCTCCTTTGCTTCCTTGGCTGATGACGCCCAAGCTTTCGGACCTTCGGCT
GAGAGTTTCACAAGAAAGGCTGACGAGAAGTTGATGACTGCTGCGGGTTG
TGGTGTCGGGAAGCCTTCAACCGCCTCCGCCGCCGCCGTAGAGGAGACCG
CGGTAGTACCGACAGCCGAAGATGGTCAAACATCGGTCGTGGTGGTTGTG
ACATGCGAAATGGAGTCGCTCTCGGAGCAAGAGCAGGCAAAGGTATATGA
AGACAAAGGTTTAAACCCGATAGTGGCAGACAAGATGCGGCAGGAAAGAG
AA
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