mRNA_H-paniculata_contig1754.4159.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1754.4159.1
Unique NamemRNA_H-paniculata_contig1754.4159.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1754.4159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1754contigH-paniculata_contig1754:10831..13725 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1510
Cds size1251
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1754.4159.1prot_H-paniculata_contig1754.4159.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1754 10831..12081 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929375.9122355-CDS-H-paniculata_contig1754:10830..120811622929375.9122355-CDS-H-paniculata_contig1754:10830..12081Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1754 10831..12081 -
1691480836.568832-CDS-H-paniculata_contig1754:10830..120811691480836.568832-CDS-H-paniculata_contig1754:10830..12081Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1754 10831..12081 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929375.928832-UTR-H-paniculata_contig1754:12081..121331622929375.928832-UTR-H-paniculata_contig1754:12081..12133Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1754 12082..12133 -
1691480836.5772216-UTR-H-paniculata_contig1754:12081..121331691480836.5772216-UTR-H-paniculata_contig1754:12081..12133Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1754 12082..12133 -
1622929375.945923-UTR-H-paniculata_contig1754:13520..137251622929375.945923-UTR-H-paniculata_contig1754:13520..13725Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1754 13521..13725 -
1691480836.5868335-UTR-H-paniculata_contig1754:13520..137251691480836.5868335-UTR-H-paniculata_contig1754:13520..13725Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1754 13521..13725 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1754.4159.1

>prot_H-paniculata_contig1754.4159.1 ID=prot_H-paniculata_contig1754.4159.1|Name=mRNA_H-paniculata_contig1754.4159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=417bp
MSGSSGSNGNSRTGNARRDTNSSGGRGNLHPSRRNAPAPAAAAAAHAETS
RQTQRGVLPAAPPIASTLVRHSPIVGGAVTRGGAGWTAPGLPHQQQHVWV
GSSGGGGVGRASGTASSSSGGGSSNGSCGTGVAKKVKPQVNTRAAVGFLK
SSKRIREARLKEEQERQAVGTVTAAVAVAGTVAALPAPALDPAANPVNSR
TLEPLERVSSSPTPRMANGTTTAVNGRASPASPTGASALAVVPSARSRDE
SLEGSSGRLAMDRYRGLARNSDSEAAVAARVAAAVEAVAGTATAATGLYP
RPPGFASSASLPPQHQQQHSVTALPAPGSHSSSSPGVSTSLPQRQRRSQR
DITGRHGGPTLTAPPLVQTNRTAAPAASGVLRAGLASGAAAEPWAEENRF
SGTGIRAAHLGLVGHRG
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mRNA from alignment at H-paniculata_contig1754:10831..13725-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1754.4159.1 ID=mRNA_H-paniculata_contig1754.4159.1|Name=mRNA_H-paniculata_contig1754.4159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2895bp|location=Sequence derived from alignment at H-paniculata_contig1754:10831..13725- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGGCAATCCGACGACCAGACCTCGCACTCTTGAACGAAACTACCGCGA
CCTATCGATTGGGGGGCTGCACGCTCGCAGAAGGAGATGGACAGCGGGCT
AGAGTACAACGTGACGTGCGTGGCGTGCTAATATCAATGCAGGTCCTGAG
AACGGTCGATCTACTGCGTAGCATTTAGCGGCACCAATTCGTCTATATTT
TGAAGGTGACTCCAAGAGTGTGTATTTTAGGTAACAAGTGCATATGATAT
GGCTTTTGCTACTTCTGCCAGTTATGTAGATGGTAAGGGAAGTGCTGTGC
CAGAGCGTTGGACTGCGATCACCGGACAGATTGTGAAGATAATTGATTTG
GTGATAACCATGCTGTTGTCGTAGTTGTTGGTTGGACGTCGCTGATGTCA
CTTAGACACATAGAGTTGCTAATTTCAGCCTAGTGCTCCGTGAATACTTC
CGTCTTCTTTTTGAATCCACGGCCCTGCTTTGGCAAATTGCATGTCACGG
TTGCAGACACTCTCGAGGCACTATGGGAAATCGACAGCCCAATTGCAACC
GACCAAACGCCGATAGGTTCCCGATGGTCATCCTTGTGCAATTTTGTCAT
GCTGACCCTACCTAGTCTACTGCACGTCCTTGGTCATTTGTTGGGGCGCT
GTTCGTTTGTTACAGCAGTCCTGTTTTTACGCGCCATGACTTCCGCAGTT
TTCAGGGTAGGAAAAAAGAAAAAACACGCCCGGGTGAAATACTTTTCCAA
ATTCAATTTCTCCAGAAGGCTAGACCCTGCACTGCTGTTTTGTAACTCAG
TCTGTGGAAACAGTACGTCTGTTGTCAGATCTTGACAAACGTCACTACCT
GCTGTGGCACGTGCGCTGCATTTCTCAAGGGAATCCAAGTCAGAAACTTT
TGACTGTGTACCCGTGTTCCAGGAGATCGCTCTATGGTACGGACACAACA
GTACATCAATTGTGATTTGGAGTTTTCAAACAGCGACGGGCCTGGAACCC
GAAAAGGTCTTCTTACAGGTGGCATGTTCTCCATGACGAGACAAATCTGG
CCGTCGCCCGCACGCCGCTGCAAAAAGTTCGCTGACGACAGTGCATTGCC
ACCGTGAACGGCACTGGGAATACAACCTGCTGCGAAGTGATCTACCCCGT
CGTAAAAAACATAGTTGGTGTGTGACTGACCTGAACGCGGTGTGATTTTT
GGCTGGACGAAACGCCACCTCCAATGGTTCATGTGTGTAAGGAACAAAAG
ACACAAGACAATTAGTAGCGAAGAAACTGACCTTCTAACTTTCATCTAAA
CTTCGAGTGCTCTCCTTGCTGACTGTCATTGAGTGCGCATCACACGGCTA
TTATCCTAGCTAAGGTAGTTTTACGTCCAGTGTGGTTTGCCGTCTCGTAG
CGTCTCTCGCGTGGTGGATGTATTTCCACGAACACTGTCGCCCTTGAAAA
CCCAACTTACAGATTGTATAACTCACAATCCTCGTGCTGCCATGCACTTC
AAGTTCGTTTGATCACCGCCTTCTCTGCCGTGTGTGTCGTTGGCCCCTAC
TCTGCGGCAAAACCTTTAAACTGCATGGCGCACCGTTGTCAGTGCGAACC
GATTCTTACGTAGGGAAAATCCAATTCTTCACCCAACATTCCTGATGAGT
GGGAGTAGCGGCAGCAACGGTAATAGCAGGACCGGCAACGCCCGCAGGGA
CACTAACTCCTCTGGAGGCAGGGGAAATCTACACCCGTCAAGAAGAAATG
CCCCCGCTCCGGCCGCGGCGGCGGCGGCACATGCGGAAACGAGTAGGCAA
ACCCAGCGGGGAGTTCTTCCCGCTGCCCCCCCAATCGCTTCGACGCTGGT
AAGACACTCTCCCATCGTTGGCGGCGCTGTCACGCGTGGCGGTGCGGGGT
GGACCGCGCCAGGGTTACCACATCAACAGCAGCATGTCTGGGTCGGATCC
AGCGGAGGAGGGGGTGTCGGGAGAGCTTCTGGTACTGCTAGTAGCAGCAG
CGGCGGCGGGAGCAGCAATGGTAGCTGCGGCACCGGGGTGGCGAAGAAAG
TGAAACCGCAGGTGAACACGCGCGCGGCTGTAGGCTTCCTGAAGTCGAGT
AAGAGAATACGCGAGGCGAGACTCAAGGAAGAACAGGAGAGACAGGCTGT
CGGGACGGTGACAGCGGCCGTGGCCGTGGCGGGGACTGTGGCAGCTCTGC
CCGCTCCCGCCTTGGACCCTGCTGCAAACCCGGTCAACTCTAGAACGCTG
GAGCCGTTGGAACGCGTGTCTAGTTCACCGACGCCCCGGATGGCTAACGG
GACAACGACAGCTGTGAATGGTCGAGCGTCGCCGGCATCGCCGACGGGTG
CTTCTGCTCTGGCGGTGGTCCCGAGCGCACGCAGCAGGGACGAATCTTTG
GAAGGTTCTTCTGGGAGGCTGGCCATGGATCGTTATCGTGGGTTGGCTAG
AAACAGTGACTCCGAAGCCGCTGTAGCTGCTCGAGTGGCGGCGGCGGTGG
AGGCGGTGGCAGGGACGGCGACGGCAGCGACAGGCTTATATCCTCGGCCG
CCGGGGTTCGCTTCTTCCGCTTCGCTGCCGCCGCAGCATCAGCAGCAGCA
TTCTGTGACAGCTTTACCTGCGCCGGGTAGTCATAGCAGCAGTAGCCCCG
GGGTTTCGACAAGTCTTCCTCAACGGCAGCGACGTTCGCAACGAGATATT
ACAGGGAGGCACGGAGGTCCAACCCTGACAGCACCACCACTCGTGCAAAC
AAATAGAACCGCGGCGCCGGCGGCCAGTGGAGTGTTGCGTGCAGGGTTGG
CGAGCGGTGCAGCGGCAGAGCCTTGGGCCGAAGAAAATCGTTTTTCAGGA
ACTGGCATCCGAGCTGCACATCTGGGACTAGTGGGACACCGGGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1754:10831..13725-

>mRNA_H-paniculata_contig1754.4159.1 ID=mRNA_H-paniculata_contig1754.4159.1|Name=mRNA_H-paniculata_contig1754.4159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2502bp|location=Sequence derived from alignment at H-paniculata_contig1754:10831..13725- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTGGGAGTAGCGGCAGCAACGGTAATAGCAGGACCGGCAACGCCCG
CAGGGACACTAACTCCTCTGGAGGCAGGGGAAATCTACACCCGTCAAGAA
GAAATGCCCCCGCTCCGGCCGCGGCGGCGGCGGCACATGCGGAAACGAGT
AGGCAAACCCAGCGGGGAGTTCTTCCCGCTGCCCCCCCAATCGCTTCGAC
GCTGGTAAGACACTCTCCCATCGTTGGCGGCGCTGTCACGCGTGGCGGTG
CGGGGTGGACCGCGCCAGGGTTACCACATCAACAGCAGCATGTCTGGGTC
GGATCCAGCGGAGGAGGGGGTGTCGGGAGAGCTTCTGGTACTGCTAGTAG
CAGCAGCGGCGGCGGGAGCAGCAATGGTAGCTGCGGCACCGGGGTGGCGA
AGAAAGTGAAACCGCAGGTGAACACGCGCGCGGCTGTAGGCTTCCTGAAG
TCGAGTAAGAGAATACGCGAGGCGAGACTCAAGGAAGAACAGGAGAGACA
GGCTGTCGGGACGGTGACAGCGGCCGTGGCCGTGGCGGGGACTGTGGCAG
CTCTGCCCGCTCCCGCCTTGGACCCTGCTGCAAACCCGGTCAACTCTAGA
ACGCTGGAGCCGTTGGAACGCGTGTCTAGTTCACCGACGCCCCGGATGGC
TAACGGGACAACGACAGCTGTGAATGGTCGAGCGTCGCCGGCATCGCCGA
CGGGTGCTTCTGCTCTGGCGGTGGTCCCGAGCGCACGCAGCAGGGACGAA
TCTTTGGAAGGTTCTTCTGGGAGGCTGGCCATGGATCGTTATCGTGGGTT
GGCTAGAAACAGTGACTCCGAAGCCGCTGTAGCTGCTCGAGTGGCGGCGG
CGGTGGAGGCGGTGGCAGGGACGGCGACGGCAGCGACAGGCTTATATCCT
CGGCCGCCGGGGTTCGCTTCTTCCGCTTCGCTGCCGCCGCAGCATCAGCA
GCAGCATTCTGTGACAGCTTTACCTGCGCCGGGTAGTCATAGCAGCAGTA
GCCCCGGGGTTTCGACAAGTCTTCCTCAACGGCAGCGACGTTCGCAACGA
GATATTACAGGGAGGCACGGAGGTCCAACCCTGACAGCACCACCACTCGT
GCAAACAAATAGAACCGCGGCGCCGGCGGCCAGTGGAGTGTTGCGTGCAG
GGTTGGCGAGCGGTGCAGCGGCAGAGCCTTGGGCCGAAGAAAATCGTTTT
TCAGGAACTGGCATCCGAGCTGCACATCTGGGACTAGTGGGACACCGGGG
CATGAGTGGGAGTAGCGGCAGCAACGGTAATAGCAGGACCGGCAACGCCC
GCAGGGACACTAACTCCTCTGGAGGCAGGGGAAATCTACACCCGTCAAGA
AGAAATGCCCCCGCTCCGGCCGCGGCGGCGGCGGCACATGCGGAAACGAG
TAGGCAAACCCAGCGGGGAGTTCTTCCCGCTGCCCCCCCAATCGCTTCGA
CGCTGGTAAGACACTCTCCCATCGTTGGCGGCGCTGTCACGCGTGGCGGT
GCGGGGTGGACCGCGCCAGGGTTACCACATCAACAGCAGCATGTCTGGGT
CGGATCCAGCGGAGGAGGGGGTGTCGGGAGAGCTTCTGGTACTGCTAGTA
GCAGCAGCGGCGGCGGGAGCAGCAATGGTAGCTGCGGCACCGGGGTGGCG
AAGAAAGTGAAACCGCAGGTGAACACGCGCGCGGCTGTAGGCTTCCTGAA
GTCGAGTAAGAGAATACGCGAGGCGAGACTCAAGGAAGAACAGGAGAGAC
AGGCTGTCGGGACGGTGACAGCGGCCGTGGCCGTGGCGGGGACTGTGGCA
GCTCTGCCCGCTCCCGCCTTGGACCCTGCTGCAAACCCGGTCAACTCTAG
AACGCTGGAGCCGTTGGAACGCGTGTCTAGTTCACCGACGCCCCGGATGG
CTAACGGGACAACGACAGCTGTGAATGGTCGAGCGTCGCCGGCATCGCCG
ACGGGTGCTTCTGCTCTGGCGGTGGTCCCGAGCGCACGCAGCAGGGACGA
ATCTTTGGAAGGTTCTTCTGGGAGGCTGGCCATGGATCGTTATCGTGGGT
TGGCTAGAAACAGTGACTCCGAAGCCGCTGTAGCTGCTCGAGTGGCGGCG
GCGGTGGAGGCGGTGGCAGGGACGGCGACGGCAGCGACAGGCTTATATCC
TCGGCCGCCGGGGTTCGCTTCTTCCGCTTCGCTGCCGCCGCAGCATCAGC
AGCAGCATTCTGTGACAGCTTTACCTGCGCCGGGTAGTCATAGCAGCAGT
AGCCCCGGGGTTTCGACAAGTCTTCCTCAACGGCAGCGACGTTCGCAACG
AGATATTACAGGGAGGCACGGAGGTCCAACCCTGACAGCACCACCACTCG
TGCAAACAAATAGAACCGCGGCGCCGGCGGCCAGTGGAGTGTTGCGTGCA
GGGTTGGCGAGCGGTGCAGCGGCAGAGCCTTGGGCCGAAGAAAATCGTTT
TTCAGGAACTGGCATCCGAGCTGCACATCTGGGACTAGTGGGACACCGGG
GC
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