mRNA_H-paniculata_contig1754.4162.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1754.4162.1
Unique NamemRNA_H-paniculata_contig1754.4162.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1754.4162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1754contigH-paniculata_contig1754:18276..18911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size283
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929375.8545573-CDS-H-paniculata_contig1754:18275..185231622929375.8545573-CDS-H-paniculata_contig1754:18275..18523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1754 18276..18523 +
1691480836.5502734-CDS-H-paniculata_contig1754:18275..185231691480836.5502734-CDS-H-paniculata_contig1754:18275..18523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1754 18276..18523 +
1622929375.8698869-CDS-H-paniculata_contig1754:18877..189111622929375.8698869-CDS-H-paniculata_contig1754:18877..18911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1754 18878..18911 +
1691480836.5586407-CDS-H-paniculata_contig1754:18877..189111691480836.5586407-CDS-H-paniculata_contig1754:18877..18911Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1754 18878..18911 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1754.4162.1prot_H-paniculata_contig1754.4162.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1754 18276..18911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1754.4162.1

>prot_H-paniculata_contig1754.4162.1 ID=prot_H-paniculata_contig1754.4162.1|Name=mRNA_H-paniculata_contig1754.4162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
QDTEEEQEANYDVASKVDLAAEGRLGSIRNATDSDRSSKSTPTVFLSPPS
VRSRRAREPVSVLASTTRVAKLDDTASRSTPSRTRRLRQLATTI
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mRNA from alignment at H-paniculata_contig1754:18276..18911+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1754.4162.1 ID=mRNA_H-paniculata_contig1754.4162.1|Name=mRNA_H-paniculata_contig1754.4162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=636bp|location=Sequence derived from alignment at H-paniculata_contig1754:18276..18911+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGATACGGAGGAGGAACAGGAGGCAAATTATGATGTCGCGAGTAAAGT
GGATCTGGCGGCGGAGGGTCGACTAGGGAGCATCAGAAATGCCACCGACA
GCGATCGTTCTTCAAAATCCACGCCTACAGTTTTCCTTTCACCGCCGTCC
GTGAGGTCGAGACGCGCCAGAGAGCCTGTGTCGGTGTTGGCGAGCACAAC
CCGTGTCGCTAAGCTCGACGACACGGCGTCGAGGTCGACTCCGTCAAGGT
ACAGTGTGGATCACCTTTTGAAGAGATGGTACTGCTTTACCGTGGAGCAA
TGGTGAAATCGGTAATTTGTCTCTGGTCAAGTCCCCACGTCCAATTCAAA
ATAGGAGTAATTGTAACTACAAGCGTATCACAATGTTTTTTTTTCTCGTT
CGTTGTTTTCTCTCGAGAAAGCTGTGGTAAAGCGGTAGGTAACGTTCACT
GTGATGGGAGAGGTGTAGATTGCAGACTGGTGGCAGAAGGCCAGCACAGA
CACCCCCGTCCTCAATACATGGAAAAAATGAGGATCCCATTACCATGTTA
ACTGACCATCGAACAACCATCCCTGCCTTGCCTCGTCTATCCCTTCCGAC
AGAACACGCAGGTTGCGACAGCTAGCTACAACCATC
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Coding sequence (CDS) from alignment at H-paniculata_contig1754:18276..18911+

>mRNA_H-paniculata_contig1754.4162.1 ID=mRNA_H-paniculata_contig1754.4162.1|Name=mRNA_H-paniculata_contig1754.4162.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at H-paniculata_contig1754:18276..18911+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGATACGGAGGAGGAACAGGAGGCAAATTATGATGTCGCGAGTAAAGT
GGATCTGGCGGCGGAGGGTCGACTAGGGAGCATCAGAAATGCCACCGACA
GCGATCGTTCTTCAAAATCCACGCCTACAGTTTTCCTTTCACCGCCGTCC
GTGAGGTCGAGACGCGCCAGAGAGCCTGTGTCGGTGTTGGCGAGCACAAC
CCGTGTCGCTAAGCTCGACGACACGGCGTCGAGGTCGACTCCGTCAAGCA
GGATACGGAGGAGGAACAGGAGGCAAATTATGATGTCGCGAGTAAAGTGG
ATCTGGCGGCGGAGGGTCGACTAGGGAGCATCAGAAATGCCACCGACAGC
GATCGTTCTTCAAAATCCACGCCTACAGTTTTCCTTTCACCGCCGTCCGT
GAGGTCGAGACGCGCCAGAGAGCCTGTGTCGGTGTTGGCGAGCACAACCC
GTGTCGCTAAGCTCGACGACACGGCGTCGAGGTCGACTCCGTCAAGAACA
CGCAGGTTGCGACAGCTAGCTACAACCATCAACACGCAGGTTGCGACAGC
TAGCTACAACCATC
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