mRNA_H-paniculata_contig1754.4160.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1754.4160.1
Unique NamemRNA_H-paniculata_contig1754.4160.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1754.4160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1754contigH-paniculata_contig1754:14060..16447 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size363
Cds size363
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929375.790175-CDS-H-paniculata_contig1754:14059..142031622929375.790175-CDS-H-paniculata_contig1754:14059..14203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1754 14060..14203 +
1691480836.5339906-CDS-H-paniculata_contig1754:14059..142031691480836.5339906-CDS-H-paniculata_contig1754:14059..14203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1754 14060..14203 +
1622929375.8088403-CDS-H-paniculata_contig1754:16228..164471622929375.8088403-CDS-H-paniculata_contig1754:16228..16447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1754 16229..16447 +
1691480836.5423362-CDS-H-paniculata_contig1754:16228..164471691480836.5423362-CDS-H-paniculata_contig1754:16228..16447Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1754 16229..16447 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1754.4160.1prot_H-paniculata_contig1754.4160.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1754 14060..16447 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1754.4160.1

>prot_H-paniculata_contig1754.4160.1 ID=prot_H-paniculata_contig1754.4160.1|Name=mRNA_H-paniculata_contig1754.4160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=121bp
MQGCDDLAGECSNSSVNRLSTPKSILRRVTPESSSSVEGTERKRVSFDEE
SLRVEKTHLTSSSSGPVGRLSKRAGILRRTKGGVNVRGASAGPLLGSSVQ
ALDLSVAGGHSPPSAAIHDGK
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mRNA from alignment at H-paniculata_contig1754:14060..16447+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1754.4160.1 ID=mRNA_H-paniculata_contig1754.4160.1|Name=mRNA_H-paniculata_contig1754.4160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2388bp|location=Sequence derived from alignment at H-paniculata_contig1754:14060..16447+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGGATGCGATGACTTGGCGGGAGAGTGCAGCAACAGCAGTGTCAA
CAGGCTCAGCACGCCGAAGTCGATTCTGCGCAGGGTGACGCCTGAGAGCT
CGTCTTCTGTGGAGGGCACTGAACGGAAGAGAGTATCCTTTGATGTGAGT
TTTGTGCAACAGTAGGAGTTTTGGCGGCACAGTAGAACGTTCACGTTTGT
TCAGTTTCGAATATCTAGTTTTCAAATTTGGCGACCCTATCGAGCAGGTC
TGTGACAGACACAAAACCCCTAACCAACGGCTACTCACAGGCTACTGGCG
CGCGCATATGTGCTAGGGTGTGTTGCAAGCATGTGATGTACTAAGTATTG
GGCACTGTAGTCCAGACACTCGGGGAATACGACGTCTGTATCTACTTGAG
TTGGCTCTCGTGTCTTCATAGCCGGGTGTCGTTCTGGATAATATGTTGAC
TTATGCAGAATATTTTTAAATTCTGGCTGGTTTTGTGACATGCACCACTG
ATCTCTGTGATCAAACACACGCGGTCTCAAAACCCAGTGAGTGTTGCGTT
ACATGCCTCGTGGTGTTCTATTTTCCTGCGCTGCTCAGACCACAACTTGT
GTTGGCTCGAAATCCCGTCTTGATCGACATCAGTAAGTTAATCATAGGAC
TTTTGCGCTGCTAATTGCACGATCGAAGCGAGTACTTCGGTTTACACACT
CTTGCTGGAGTTGTATCATGGCCATGTATGAAGCGAGAGCTTTGTTCGTG
TGCGGCTGTTGTACTACGGTCGATTAGGCGTGTAGCTGACATCCCCGACA
GAGTACAGTTCAGAAGGCTGTACATGAACAAAGGCACCGGATACGCGCAA
TCGCTGTTGCAGCATGCTTGCCGCTTCCGGCAGGTGCTCCGCCATTGTCG
TGCTTTGTAAATACTTTCCAAAACAAAACATAAGTGTGTGCTCAAACCCC
GAACCGTGCAGTGTTGTATTGTCTTCAGTGCAAAGTGTTTACTAATCATG
TGGGTTACAGCTTACGTGCCCGATCATCACAGTAGCAGGACCACTGCTAC
GTCCGTAGTGTACGTGCATTGTCCCCGAGCACCCACTATGGCACGCTGCG
CTCGCAGTGGCTCATGACATGAACACAAAGAAATCTTTCTTCGTATTTTA
CTTGAGTACAGGATCGCAGAGCTGTTCAAAACGACGATGTCGGCGACAAC
GACGATCTTACTGGTCACTGTAGAAATGACGTCAAACCCGTGTGTTGACT
TTTTTCGAACTTAGTTCCTGAACTACGGCGAGAGTATTTCCATCGACAGA
TCCCGACAAGATTTTTCCCATGAGTACACCCTGTCGATACCATCAGCACA
GAGAAATTGAGGGGGTAGCCCTTTTTGATACAGGCGATCGGCGAACCAAG
TAGGAAAACCTCCAGATTGTGGCTAACTTTCCGCTATTTATTCAGTATTT
CAGACGTTACACAGGGGCGGGCCTCCCCCCCTACTTGAACAAAACGCCCT
ACTAAACGGTATCGGGCGGAATTCGGGCAATAAATTGTCATGCTGAAAAA
AAAAGATACAAATGGTCCGCCCTCTACCGCTGGAAACTTGCGCACACCCT
CGGAACTCGAAACTAGCGAAGGACGTCAATGGAAACAACACTCGAAAGTC
ATCTGGCAATTCTGATTCATAACACGTTAACTGGATGGTGTTTTGTCGTT
TCTAGCGTTGGAATCTGCGAAAAGCTTAGTCATGGTTCGTGTACCCATCT
GCGATACCCGACTAACCGCACGGGCTTTTTTTTTTTCTCTGGGTATGTCC
GGTTGACCGATTGTCATTTCCTGCGCCCCGGTTCCTAGCACTAGATGCAC
GCCGTTCTCCACGAACCGAGCGATTTTCGCGCCTTGTAGATGAGAAAGAA
GTGCAGGCAACGCGTGCCATCAGAATCATTTTTTTAATTCCCAATAAGGC
CCTGCAACTGAACGAGCCTATTGTTTCTTGAATCATTCATAAAAGGACTC
CAGACATGAACTGAACGCTTTGTGCGTCCGTCTCATAATTCCCACATGAA
CGTGCGATATTTCATCGTTGCCTTGAGCAAATTGGTGCGCATATCTTCTA
ATGACGAAATAAAGAAGCCTCATGATTTTCCGTTATTTTTCTTCTGAACA
TGTGCATGAACAAATACAGGAGGAAAGCCTCCGCGTCGAGAAAACCCATC
TCACCAGCAGTTCGTCGGGACCTGTTGGTCGCCTGTCGAAGCGGGCCGGC
ATCCTTCGCCGCACAAAGGGCGGCGTCAACGTTAGAGGAGCGAGTGCGGG
ACCCCTGCTGGGCTCCTCAGTTCAAGCCCTAGATCTGAGCGTGGCCGGCG
GGCACTCCCCACCGTCTGCAGCAATCCATGATGGCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1754:14060..16447+

>mRNA_H-paniculata_contig1754.4160.1 ID=mRNA_H-paniculata_contig1754.4160.1|Name=mRNA_H-paniculata_contig1754.4160.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=726bp|location=Sequence derived from alignment at H-paniculata_contig1754:14060..16447+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGGATGCGATGACTTGGCGGGAGAGTGCAGCAACAGCAGTGTCAA
CAGGCTCAGCACGCCGAAGTCGATTCTGCGCAGGGTGACGCCTGAGAGCT
CGTCTTCTGTGGAGGGCACTGAACGGAAGAGAGTATCCTTTGATATGCAG
GGATGCGATGACTTGGCGGGAGAGTGCAGCAACAGCAGTGTCAACAGGCT
CAGCACGCCGAAGTCGATTCTGCGCAGGGTGACGCCTGAGAGCTCGTCTT
CTGTGGAGGGCACTGAACGGAAGAGAGTATCCTTTGATGAGGAAAGCCTC
CGCGTCGAGAAAACCCATCTCACCAGCAGTTCGTCGGGACCTGTTGGTCG
CCTGTCGAAGCGGGCCGGCATCCTTCGCCGCACAAAGGGCGGCGTCAACG
TTAGAGGAGCGAGTGCGGGACCCCTGCTGGGCTCCTCAGTTCAAGCCCTA
GATCTGAGCGTGGCCGGCGGGCACTCCCCACCGTCTGCAGCAATCCATGA
TGGCAAGGAGGAAAGCCTCCGCGTCGAGAAAACCCATCTCACCAGCAGTT
CGTCGGGACCTGTTGGTCGCCTGTCGAAGCGGGCCGGCATCCTTCGCCGC
ACAAAGGGCGGCGTCAACGTTAGAGGAGCGAGTGCGGGACCCCTGCTGGG
CTCCTCAGTTCAAGCCCTAGATCTGAGCGTGGCCGGCGGGCACTCCCCAC
CGTCTGCAGCAATCCATGATGGCAAG
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