mRNA_H-paniculata_contig17531.4156.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17531.4156.1
Unique NamemRNA_H-paniculata_contig17531.4156.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17531.4156.1 vs. uniprot
Match: H8ZVV6_SALSC (Proteasome non-ATPase regulatory subunit (Fragment) n=1 Tax=Salvia sclarea TaxID=38869 RepID=H8ZVV6_SALSC)

HSP 1 Score: 102 bits (254), Expect = 2.640e-27
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 QMVVGWYHSHPGFGCWLSGVDINTQQSFEQLNTRAVSIVVDPIQSVKGKV 150
            +MVVGWYHSHPGFGCWLSGVDINTQQSFE LN RAV++VVDPIQSVKGKV
Sbjct:    2 EMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKV 51
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BLAST of mRNA_H-paniculata_contig17531.4156.1 vs. uniprot
Match: A0A6H5KJB1_9PHAE (MPN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KJB1_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 1.070e-26
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 QMVVGWYHSHPGFGCWLSGVDINTQQSFEQLNTRAVSIVVDPIQSVKGKV 150
            +MVVGWYHSHPGFGCWLSGVDINTQQSFEQLN RAVSIVVDPIQSVKGKV
Sbjct:  106 EMVVGWYHSHPGFGCWLSGVDINTQQSFEQLNARAVSIVVDPIQSVKGKV 155
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BLAST of mRNA_H-paniculata_contig17531.4156.1 vs. uniprot
Match: A0A699ZV07_HAELA (26S proteasome regulatory subunit (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZV07_HAELA)

HSP 1 Score: 102 bits (253), Expect = 1.710e-26
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 QMVVGWYHSHPGFGCWLSGVDINTQQSFEQLNTRAVSIVVDPIQSVKGKV 150
            +MVVGWYHSHPGFGCWLSGVDINTQQSFE LN RAV++VVDP+QSVKGKV
Sbjct:   66 EMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPVQSVKGKV 115
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BLAST of mRNA_H-paniculata_contig17531.4156.1 vs. uniprot
Match: E2L5D5_MONPE (MPN domain-containing protein (Fragment) n=1 Tax=Moniliophthora perniciosa (strain FA553 / isolate CP02) TaxID=554373 RepID=E2L5D5_MONPE)

HSP 1 Score: 101 bits (252), Expect = 2.180e-26
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 QMVVGWYHSHPGFGCWLSGVDINTQQSFEQLNTRAVSIVVDPIQSVKGKV 150
            +MVVGWYHSHPGFGCWLS VDINTQQSFE LNTR+V++VVDPIQSVKGKV
Sbjct:    2 EMVVGWYHSHPGFGCWLSSVDINTQQSFESLNTRSVAVVVDPIQSVKGKV 51
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BLAST of mRNA_H-paniculata_contig17531.4156.1 vs. uniprot
Match: A0A7J7PED2_9CHLO (26S proteasome non-ATPase regulatory subunit 14 n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PED2_9CHLO)

HSP 1 Score: 102 bits (254), Expect = 2.410e-26
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 QMVVGWYHSHPGFGCWLSGVDINTQQSFEQLNTRAVSIVVDPIQSVKGKV 150
            +MVVGWYHSHPGFGCWLSGVDINTQQSFE LN RAV++VVDP+QSVKGKV
Sbjct:  107 EMVVGWYHSHPGFGCWLSGVDINTQQSFEALNARAVAVVVDPVQSVKGKV 156
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BLAST of mRNA_H-paniculata_contig17531.4156.1 vs. uniprot
Match: A0A2K1JZH9_PHYPA (MPN domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JZH9_PHYPA)

HSP 1 Score: 102 bits (254), Expect = 2.890e-26
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 QMVVGWYHSHPGFGCWLSGVDINTQQSFEQLNTRAVSIVVDPIQSVKGKV 150
            +MVVGWYHSHPGFGCWLSGVDINTQQSFE LN RAV++VVDPIQSVKGKV
Sbjct:   56 EMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKV 105
[Close]
BLAST of mRNA_H-paniculata_contig17531.4156.1 vs. uniprot
Match: A0A0J8B1T0_BETVV (MPN domain-containing protein (Fragment) n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8B1T0_BETVV)

HSP 1 Score: 102 bits (254), Expect = 3.040e-26
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 QMVVGWYHSHPGFGCWLSGVDINTQQSFEQLNTRAVSIVVDPIQSVKGKV 150
            +MVVGWYHSHPGFGCWLSGVDINTQQSFE LN RAV++VVDPIQSVKGKV
Sbjct:  112 EMVVGWYHSHPGFGCWLSGVDINTQQSFEALNKRAVAVVVDPIQSVKGKV 161
[Close]
BLAST of mRNA_H-paniculata_contig17531.4156.1 vs. uniprot
Match: A0A1I8C0P7_MELHA (MPN domain-containing protein n=1 Tax=Meloidogyne hapla TaxID=6305 RepID=A0A1I8C0P7_MELHA)

HSP 1 Score: 103 bits (256), Expect = 3.170e-26
Identity = 45/50 (90.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 QMVVGWYHSHPGFGCWLSGVDINTQQSFEQLNTRAVSIVVDPIQSVKGKV 150
            +MVVGWYHSHPGFGCWLSGVDINTQQSFEQL+ RAV++VVDPIQSVKGKV
Sbjct:  108 EMVVGWYHSHPGFGCWLSGVDINTQQSFEQLSNRAVAVVVDPIQSVKGKV 157
[Close]
BLAST of mRNA_H-paniculata_contig17531.4156.1 vs. uniprot
Match: I6UZP8_9LAMI (Hydroxyproline-rich glycoprotein family protein (Fragment) n=1 Tax=Micromeria hyssopifolia TaxID=224745 RepID=I6UZP8_9LAMI)

HSP 1 Score: 101 bits (251), Expect = 3.350e-26
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 1 
Query:    4 MVVGWYHSHPGFGCWLSGVDINTQQSFEQLNTRAVSIVVDPIQSVKGKV 150
            MVVGWYHSHPGFGCWLSGVDINTQQSFE LN RAV++VVDPIQSVKGKV
Sbjct:   62 MVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKV 110
[Close]
BLAST of mRNA_H-paniculata_contig17531.4156.1 vs. uniprot
Match: A0A822YMQ8_NELNU (MPN domain-containing protein n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822YMQ8_NELNU)

HSP 1 Score: 102 bits (254), Expect = 3.810e-26
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 QMVVGWYHSHPGFGCWLSGVDINTQQSFEQLNTRAVSIVVDPIQSVKGKV 150
            +MVVGWYHSHPGFGCWLSGVDINTQQSFE LN RAV++VVDPIQSVKGKV
Sbjct:  105 EMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKV 154
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17531.4156.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
H8ZVV6_SALSC2.640e-2790.00Proteasome non-ATPase regulatory subunit (Fragment... [more]
A0A6H5KJB1_9PHAE1.070e-2696.00MPN domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A699ZV07_HAELA1.710e-2688.0026S proteasome regulatory subunit (Fragment) n=1 T... [more]
E2L5D5_MONPE2.180e-2688.00MPN domain-containing protein (Fragment) n=1 Tax=M... [more]
A0A7J7PED2_9CHLO2.410e-2688.0026S proteasome non-ATPase regulatory subunit 14 n=... [more]
A0A2K1JZH9_PHYPA2.890e-2690.00MPN domain-containing protein n=2 Tax=Physcomitriu... [more]
A0A0J8B1T0_BETVV3.040e-2690.00MPN domain-containing protein (Fragment) n=2 Tax=B... [more]
A0A1I8C0P7_MELHA3.170e-2690.00MPN domain-containing protein n=1 Tax=Meloidogyne ... [more]
I6UZP8_9LAMI3.350e-2691.84Hydroxyproline-rich glycoprotein family protein (F... [more]
A0A822YMQ8_NELNU3.810e-2690.00MPN domain-containing protein n=1 Tax=Nelumbo nuci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17531contigH-paniculata_contig17531:565..717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue9.4e-21
Seed eggNOG ortholog2880.D7FTN9
Preferred namePSMD14
KEGG koko:K03030
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000266,GO:0000502,GO:0000724,GO:0000725,GO:0000726,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004175,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0005838,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006310,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006955,GO:0006974,GO:0006996,GO:0007005,GO:0007031,GO:0007088,GO:0007346,GO:0008047,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0008237,GO:0008541,GO:0009056,GO:0009057,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010604,GO:0010638,GO:0010950,GO:0010952,GO:0010965,GO:0012505,GO:0016043,GO:0016192,GO:0016504,GO:0016559,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019783,GO:0019941,GO:0022607,GO:0022624,GO:0030071,GO:0030141,GO:0030162,GO:0030163,GO:0030234,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032268,GO:0032270,GO:0032436,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0033554,GO:0034399,GO:0034515,GO:0034622,GO:0034641,GO:0034774,GO:0036211,GO:0036230,GO:0036459,GO:0042119,GO:0042176,GO:0043085,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043248,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045055,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046483,GO:0046903,GO:0048285,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051603,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0052547,GO:0052548,GO:0060205,GO:0060255,GO:0061133,GO:0061134,GO:0061135,GO:0061136,GO:0061578,GO:0062033,GO:0065003,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070536,GO:0070628,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:0090068,GO:0090304,GO:0097708,GO:0098772,GO:0099503,GO:0101002,GO:0101005,GO:0140096,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1902906,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
EggNOG free text desc.metallopeptidase activity
EggNOG OGsCOG1310@1,KOG1555@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01002,ko03051,ko04121
Exons1
Model size153
Cds size150
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929375.5985901-UTR-H-paniculata_contig17531:564..5671622929375.5985901-UTR-H-paniculata_contig17531:564..567Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17531 565..567 +
1691480836.4216187-UTR-H-paniculata_contig17531:564..5671691480836.4216187-UTR-H-paniculata_contig17531:564..567Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17531 565..567 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929375.6157663-CDS-H-paniculata_contig17531:567..7171622929375.6157663-CDS-H-paniculata_contig17531:567..717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17531 568..717 +
1691480836.438164-CDS-H-paniculata_contig17531:567..7171691480836.438164-CDS-H-paniculata_contig17531:567..717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17531 568..717 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17531.4156.1prot_H-paniculata_contig17531.4156.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17531 568..717 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17531.4156.1

>prot_H-paniculata_contig17531.4156.1 ID=prot_H-paniculata_contig17531.4156.1|Name=mRNA_H-paniculata_contig17531.4156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp
MVVGWYHSHPGFGCWLSGVDINTQQSFEQLNTRAVSIVVDPIQSVKGKV*
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mRNA from alignment at H-paniculata_contig17531:565..717+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17531.4156.1 ID=mRNA_H-paniculata_contig17531.4156.1|Name=mRNA_H-paniculata_contig17531.4156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at H-paniculata_contig17531:565..717+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATGGTTGTCGGATGGTACCACTCGCACCCCGGGTTCGGGTGCTGGTT
ATCAGGGGTTGACATCAACACACAGCAGAGCTTTGAGCAGCTGAACACGC
GCGCGGTGTCTATCGTCGTGGATCCCATCCAGTCCGTCAAGGGAAAGGTG
TAG
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Coding sequence (CDS) from alignment at H-paniculata_contig17531:565..717+

>mRNA_H-paniculata_contig17531.4156.1 ID=mRNA_H-paniculata_contig17531.4156.1|Name=mRNA_H-paniculata_contig17531.4156.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at H-paniculata_contig17531:565..717+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTGTCGGATGGTACCACTCGCACCCCGGGTTCGGGTGCTGGTTATC
AGGGGTTGACATCAACACACAGCAGAGCTTTGAGCAGCTGAACACGCGCG
CGGTGTCTATCGTCGTGGATCCCATCCAGTCCGTCAAGGGAAAGGTGTAG
ATGGTTGTCGGATGGTACCACTCGCACCCCGGGTTCGGGTGCTGGTTATC
AGGGGTTGACATCAACACACAGCAGAGCTTTGAGCAGCTGAACACGCGCG
CGGTGTCTATCGTCGTGGATCCCATCCAGTCCGTCAAGGGAAAGGTGTAG
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