mRNA_H-paniculata_contig17527.4155.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17527.4155.1
Unique NamemRNA_H-paniculata_contig17527.4155.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17527.4155.1 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 2.900e-5
Identity = 31/86 (36.05%), Postives = 49/86 (56.98%), Query Frame = 1 
Query:   13 VHVLWYSPVNKATRANAATLDAATYGQGSIGTDFSEVVEATIKGKRK-RSRHVPDMDHEPVSRIVAHCEKIKPNGKKIPVKILTQL 267
            V + W+ P N  TR  AA+L    YG+ +    +  V+ A+   +R  +++ V D+  EPV  IVA C+K+  NG+KIP ++L  L
Sbjct:  346 VDLHWFRPTNDHTRDKAASLTLDEYGERTFVEGY--VMTASDGTRRSGKAKKVKDVSWEPVEGIVATCDKLVGNGRKIPNRVLKVL 429
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17527.4155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JCW3_9PHAE2.900e-536.05Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17527contigH-paniculata_contig17527:4298..4627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size331
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929375.535219-CDS-H-paniculata_contig17527:4297..46001622929375.535219-CDS-H-paniculata_contig17527:4297..4600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17527 4298..4600 +
1691480836.39583-CDS-H-paniculata_contig17527:4297..46001691480836.39583-CDS-H-paniculata_contig17527:4297..4600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17527 4298..4600 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929375.5541193-UTR-H-paniculata_contig17527:4600..46271622929375.5541193-UTR-H-paniculata_contig17527:4600..4627Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17527 4601..4627 +
1691480836.4065323-UTR-H-paniculata_contig17527:4600..46271691480836.4065323-UTR-H-paniculata_contig17527:4600..4627Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17527 4601..4627 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17527.4155.1prot_H-paniculata_contig17527.4155.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17527 4298..4600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17527.4155.1

>prot_H-paniculata_contig17527.4155.1 ID=prot_H-paniculata_contig17527.4155.1|Name=mRNA_H-paniculata_contig17527.4155.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
VNGEVHVLWYSPVNKATRANAATLDAATYGQGSIGTDFSEVVEATIKGKR
KRSRHVPDMDHEPVSRIVAHCEKIKPNGKKIPVKILTQLSELHKIKVGRE
*
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mRNA from alignment at H-paniculata_contig17527:4298..4627+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17527.4155.1 ID=mRNA_H-paniculata_contig17527.4155.1|Name=mRNA_H-paniculata_contig17527.4155.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=330bp|location=Sequence derived from alignment at H-paniculata_contig17527:4298..4627+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAATGGTGAGGTCCATGTCCTCTGGTATAGCCCTGTTAATAAAGCAAC
CCGTGCCAACGCTGCTACGCTGGACGCAGCTACCTACGGACAAGGCAGTA
TTGGCACAGATTTTTCTGAGGTTGTCGAGGCGACTATAAAAGGGAAACGT
AAGCGCAGTCGCCATGTCCCAGATATGGATCACGAACCTGTGTCCCGCAT
TGTGGCTCACTGTGAGAAGATTAAGCCTAACGGGAAGAAAATCCCTGTAA
AAATTCTGACACAGCTTTCTGAGTTGCACAAGATAAAGGTGGGACGAGAG
TAAAGCCGGGGAAGGTCTTCACGTGTGAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig17527:4298..4627+

>mRNA_H-paniculata_contig17527.4155.1 ID=mRNA_H-paniculata_contig17527.4155.1|Name=mRNA_H-paniculata_contig17527.4155.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig17527:4298..4627+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAATGGTGAGGTCCATGTCCTCTGGTATAGCCCTGTTAATAAAGCAAC
CCGTGCCAACGCTGCTACGCTGGACGCAGCTACCTACGGACAAGGCAGTA
TTGGCACAGATTTTTCTGAGGTTGTCGAGGCGACTATAAAAGGGAAACGT
AAGCGCAGTCGCCATGTCCCAGATATGGATCACGAACCTGTGTCCCGCAT
TGTGGCTCACTGTGAGAAGATTAAGCCTAACGGGAAGAAAATCCCTGTAA
AAATTCTGACACAGCTTTCTGAGTTGCACAAGATAAAGGTGGGACGAGAG
TAAGTGAATGGTGAGGTCCATGTCCTCTGGTATAGCCCTGTTAATAAAGC
AACCCGTGCCAACGCTGCTACGCTGGACGCAGCTACCTACGGACAAGGCA
GTATTGGCACAGATTTTTCTGAGGTTGTCGAGGCGACTATAAAAGGGAAA
CGTAAGCGCAGTCGCCATGTCCCAGATATGGATCACGAACCTGTGTCCCG
CATTGTGGCTCACTGTGAGAAGATTAAGCCTAACGGGAAGAAAATCCCTG
TAAAAATTCTGACACAGCTTTCTGAGTTGCACAAGATAAAGGTGGGACGA
GAGTAA
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