mRNA_H-paniculata_contig17524.4152.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17524.4152.1
Unique NamemRNA_H-paniculata_contig17524.4152.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A225UK66_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UK66_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.060e-14
Identity = 37/78 (47.44%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    4 TRPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCGVDMLVYADLDYATCQDDRRSVSGGAVLL 237
            TRPDIA  V   + F ENPG +H  A +K+++Y+L+T D+GITY+G   G  +  Y+D D+A  +DDRRSVSG  +++
Sbjct:  327 TRPDIAIVVAKLSRFLENPGEAHWTAGIKVVRYLLKTKDVGITYNGL-LGTKLTAYSDADWAGNRDDRRSVSGVMLMM 403          
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A2P4XFG4_9STRA (Retrovirus-related pol Polyprotein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XFG4_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.220e-13
Identity = 34/77 (44.16%), Postives = 51/77 (66.23%), Query Frame = 1
Query:    7 RPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCGVDMLVYADLDYATCQDDRRSVSGGAVLL 237
            RPDIA  V   + F ENPG  H  A +K+++Y+L+T D+GITY G   G ++  Y+D+D+   +DDR SVSG  +++
Sbjct:  115 RPDIAVTVTKLSRFLENPGQKHWDAGIKVVRYLLKTKDVGITYDGL-LGTELTAYSDVDWTGNRDDRGSVSGMMLII 190          
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A329R934_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329R934_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.410e-13
Identity = 34/78 (43.59%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    4 TRPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCGVDMLVYADLDYATCQDDRRSVSGGAVLL 237
            TRPDI++AV   + F ENPG  H  A +++++Y+L+T D+GIT  G+  G  ++ Y+D D+A  +DDR SVSG  +++
Sbjct:  297 TRPDISNAVAQLSRFLENPGHKHWDASIRVVRYLLKTKDVGITCDGRQ-GTKLVAYSDADWAGNRDDRSSVSGLMLMM 373          
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A2N9IDU9_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IDU9_FAGSY)

HSP 1 Score: 72.0 bits (175), Expect = 6.520e-13
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    4 TRPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCGVDMLVYADLDYATCQDDRRSVSGGAVLL 237
            TRPDIA A+     F  +PG+ H RA  K+L+Y+ RT D  +TY   D  ++++ YAD DYA C DD +S SG   +L
Sbjct:  485 TRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYRRSDL-LEVIGYADADYAGCADDLKSTSGYVFML 561          
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A2N9HDZ1_FAGSY (RNase H type-1 domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HDZ1_FAGSY)

HSP 1 Score: 72.0 bits (175), Expect = 6.690e-13
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    4 TRPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCGVDMLVYADLDYATCQDDRRSVSGGAVLL 237
            TRPDIA A+     F  +PG+ H RA  K+L+Y+ RT D  +TY   D  ++++ YAD DYA C DD +S SG   +L
Sbjct:  793 TRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYRRSDL-LEVIGYADADYAGCADDLKSTSGYVFML 869          
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A2N9GV19_FAGSY (Integrase catalytic domain-containing protein n=6 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GV19_FAGSY)

HSP 1 Score: 71.6 bits (174), Expect = 8.990e-13
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    4 TRPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCGVDMLVYADLDYATCQDDRRSVSGGAVLL 237
            TRPDIA A+     F  +PG+ H RA  K+L+Y+ RT D  +TY   D  ++++ YAD DYA C DD +S SG   +L
Sbjct:  591 TRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYRRSDL-LEVVGYADADYAGCADDLKSTSGYVFML 667          
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A1Q3ETR3_LENED (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Lentinula edodes TaxID=5353 RepID=A0A1Q3ETR3_LENED)

HSP 1 Score: 70.9 bits (172), Expect = 1.700e-12
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    7 RPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQ-DCGVDMLVYADLDYATCQDDRRSVSGGAVLL 237
            RPDIAHA    + F  NP   H + ++ +++Y+  T DLGITY+     G+  +VYAD DYA+C D RRS SG   ++
Sbjct: 1228 RPDIAHAANVLSRFAHNPRKVHWQHLMHLVRYISGTRDLGITYTKMAPGGLSPIVYADADYASCVDTRRSTSGVLTMM 1305          
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A2N5VPW3_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5VPW3_9BASI)

HSP 1 Score: 70.5 bits (171), Expect = 2.330e-12
Identity = 34/79 (43.04%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    4 TRPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCGVDMLV-YADLDYATCQDDRRSVSGGAVLL 237
            TRPDI  AV + + +   PG++H  A +++L+Y+  T D+G+  S      D LV YAD D+A+C + RRSVSG  +LL
Sbjct: 1109 TRPDITFAVSSLSQYLNAPGINHWEAGIQVLRYLKGTRDVGLKLSKNPVAQDSLVGYADADWASCPESRRSVSGNLILL 1187          
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A0J7JWL9_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7JWL9_LASNI)

HSP 1 Score: 68.2 bits (165), Expect = 5.150e-12
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    4 TRPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCGVDMLVYADLDYATCQDDRRSVSGGAVLL 237
            TRPD+A A    + FC NP  +H +   ++L+Y+ RT D GITY+ +DC   M  Y D D+A   +DRRS SG  ++L
Sbjct:   31 TRPDLAFAASALSRFCTNPEEAHWKLAKRVLRYLQRTIDYGITYT-KDCE-KMRAYVDSDWAGDVEDRRSCSGNVIIL 106          
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A2N9EBY4_FAGSY (Integrase catalytic domain-containing protein n=4 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EBY4_FAGSY)

HSP 1 Score: 69.3 bits (168), Expect = 5.910e-12
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 1
Query:    4 TRPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCGVDMLVYADLDYATCQDDRRSVSGGAVLL 237
            TRPDIA A+     F  +P + H RA  K+L+Y+ RT D  +TY   D  ++++ YAD DYA C DD +S SG   +L
Sbjct:  949 TRPDIAFAISVLGRFQSDPSMDHWRAAKKVLRYLQRTKDFMLTYRHSDL-LEVVGYADADYAGCADDLKSTSGYVFML 1025          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A225UK66_9STRA1.060e-1447.44Integrase, catalytic core protein (Fragment) n=1 T... [more]
A0A2P4XFG4_9STRA3.220e-1344.16Retrovirus-related pol Polyprotein n=1 Tax=Phytoph... [more]
A0A329R934_9STRA3.410e-1343.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9IDU9_FAGSY6.520e-1344.87Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9HDZ1_FAGSY6.690e-1344.87RNase H type-1 domain-containing protein n=1 Tax=F... [more]
A0A2N9GV19_FAGSY8.990e-1344.87Integrase catalytic domain-containing protein n=6 ... [more]
A0A1Q3ETR3_LENED1.700e-1243.59Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N5VPW3_9BASI2.330e-1243.04Integrase catalytic domain-containing protein n=2 ... [more]
A0A0J7JWL9_LASNI5.150e-1243.59Retrovirus-related pol polyprotein from transposon... [more]
A0A2N9EBY4_FAGSY5.910e-1243.59Integrase catalytic domain-containing protein n=4 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17524contigH-paniculata_contig17524:1380..1619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue8.8e-13
Seed eggNOG ortholog67593.Physo130920
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QH7N@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size240
Cds size240
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929375.3066885-CDS-H-paniculata_contig17524:1379..16191622929375.3066885-CDS-H-paniculata_contig17524:1379..1619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17524 1380..1619 -
1691480836.2919507-CDS-H-paniculata_contig17524:1379..16191691480836.2919507-CDS-H-paniculata_contig17524:1379..1619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17524 1380..1619 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17524.4152.1prot_H-paniculata_contig17524.4152.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17524 1380..1619 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17524.4152.1

>prot_H-paniculata_contig17524.4152.1 ID=prot_H-paniculata_contig17524.4152.1|Name=mRNA_H-paniculata_contig17524.4152.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
MTRPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDC
GVDMLVYADLDYATCQDDRRSVSGGAVLLG
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mRNA from alignment at H-paniculata_contig17524:1380..1619-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17524.4152.1 ID=mRNA_H-paniculata_contig17524.4152.1|Name=mRNA_H-paniculata_contig17524.4152.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at H-paniculata_contig17524:1380..1619- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGCGACCCGACATCGCACACGCCGTACGCACTACGGCAACGTTTTG TGAGAACCCAGGGGTGTCACACAAGAGAGCTGTGGTAAAGATTCTGCAGT ACGTACTAAGAACCGCGGACCTAGGAATCACCTACAGTGGACAGGACTGC GGGGTCGACATGTTGGTTTACGCTGACTTGGACTACGCAACGTGCCAGGA CGACCGACGCTCGGTTTCCGGGGGAGCGGTACTACTGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig17524:1380..1619-

>mRNA_H-paniculata_contig17524.4152.1 ID=mRNA_H-paniculata_contig17524.4152.1|Name=mRNA_H-paniculata_contig17524.4152.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig17524:1380..1619- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGCGACCCGACATCGCACACGCCGTACGCACTACGGCAACGTTTTG
TGAGAACCCAGGGGTGTCACACAAGAGAGCTGTGGTAAAGATTCTGCAGT
ACGTACTAAGAACCGCGGACCTAGGAATCACCTACAGTGGACAGGACTGC
GGGGTCGACATGTTGGTTTACGCTGACTTGGACTACGCAACGTGCCAGGA
CGACCGACGCTCGGTTTCCGGGGGAGCGGTACTACTGGGGATGACGCGAC
CCGACATCGCACACGCCGTACGCACTACGGCAACGTTTTGTGAGAACCCA
GGGGTGTCACACAAGAGAGCTGTGGTAAAGATTCTGCAGTACGTACTAAG
AACCGCGGACCTAGGAATCACCTACAGTGGACAGGACTGCGGGGTCGACA
TGTTGGTTTACGCTGACTTGGACTACGCAACGTGCCAGGACGACCGACGC
TCGGTTTCCGGGGGAGCGGTACTACTGGGG
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