mRNA_H-paniculata_contig17524.4152.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A225UK66_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UK66_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 1.060e-14 Identity = 37/78 (47.44%), Postives = 54/78 (69.23%), Query Frame = 1
Query: 4 TRPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCGVDMLVYADLDYATCQDDRRSVSGGAVLL 237
TRPDIA V + F ENPG +H A +K+++Y+L+T D+GITY+G G + Y+D D+A +DDRRSVSG +++
Sbjct: 327 TRPDIAIVVAKLSRFLENPGEAHWTAGIKVVRYLLKTKDVGITYNGL-LGTKLTAYSDADWAGNRDDRRSVSGVMLMM 403
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A2P4XFG4_9STRA (Retrovirus-related pol Polyprotein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XFG4_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 3.220e-13 Identity = 34/77 (44.16%), Postives = 51/77 (66.23%), Query Frame = 1
Query: 7 RPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCGVDMLVYADLDYATCQDDRRSVSGGAVLL 237
RPDIA V + F ENPG H A +K+++Y+L+T D+GITY G G ++ Y+D+D+ +DDR SVSG +++
Sbjct: 115 RPDIAVTVTKLSRFLENPGQKHWDAGIKVVRYLLKTKDVGITYDGL-LGTELTAYSDVDWTGNRDDRGSVSGMMLII 190
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A329R934_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329R934_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 3.410e-13 Identity = 34/78 (43.59%), Postives = 54/78 (69.23%), Query Frame = 1
Query: 4 TRPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCGVDMLVYADLDYATCQDDRRSVSGGAVLL 237
TRPDI++AV + F ENPG H A +++++Y+L+T D+GIT G+ G ++ Y+D D+A +DDR SVSG +++
Sbjct: 297 TRPDISNAVAQLSRFLENPGHKHWDASIRVVRYLLKTKDVGITCDGRQ-GTKLVAYSDADWAGNRDDRSSVSGLMLMM 373
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A2N9IDU9_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IDU9_FAGSY) HSP 1 Score: 72.0 bits (175), Expect = 6.520e-13 Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 1
Query: 4 TRPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCGVDMLVYADLDYATCQDDRRSVSGGAVLL 237
TRPDIA A+ F +PG+ H RA K+L+Y+ RT D +TY D ++++ YAD DYA C DD +S SG +L
Sbjct: 485 TRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYRRSDL-LEVIGYADADYAGCADDLKSTSGYVFML 561
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A2N9HDZ1_FAGSY (RNase H type-1 domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HDZ1_FAGSY) HSP 1 Score: 72.0 bits (175), Expect = 6.690e-13 Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 1
Query: 4 TRPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCGVDMLVYADLDYATCQDDRRSVSGGAVLL 237
TRPDIA A+ F +PG+ H RA K+L+Y+ RT D +TY D ++++ YAD DYA C DD +S SG +L
Sbjct: 793 TRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYRRSDL-LEVIGYADADYAGCADDLKSTSGYVFML 869
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A2N9GV19_FAGSY (Integrase catalytic domain-containing protein n=6 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GV19_FAGSY) HSP 1 Score: 71.6 bits (174), Expect = 8.990e-13 Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 1
Query: 4 TRPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCGVDMLVYADLDYATCQDDRRSVSGGAVLL 237
TRPDIA A+ F +PG+ H RA K+L+Y+ RT D +TY D ++++ YAD DYA C DD +S SG +L
Sbjct: 591 TRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYRRSDL-LEVVGYADADYAGCADDLKSTSGYVFML 667
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A1Q3ETR3_LENED (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Lentinula edodes TaxID=5353 RepID=A0A1Q3ETR3_LENED) HSP 1 Score: 70.9 bits (172), Expect = 1.700e-12 Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1
Query: 7 RPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQ-DCGVDMLVYADLDYATCQDDRRSVSGGAVLL 237
RPDIAHA + F NP H + ++ +++Y+ T DLGITY+ G+ +VYAD DYA+C D RRS SG ++
Sbjct: 1228 RPDIAHAANVLSRFAHNPRKVHWQHLMHLVRYISGTRDLGITYTKMAPGGLSPIVYADADYASCVDTRRSTSGVLTMM 1305
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A2N5VPW3_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5VPW3_9BASI) HSP 1 Score: 70.5 bits (171), Expect = 2.330e-12 Identity = 34/79 (43.04%), Postives = 50/79 (63.29%), Query Frame = 1
Query: 4 TRPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCGVDMLV-YADLDYATCQDDRRSVSGGAVLL 237
TRPDI AV + + + PG++H A +++L+Y+ T D+G+ S D LV YAD D+A+C + RRSVSG +LL
Sbjct: 1109 TRPDITFAVSSLSQYLNAPGINHWEAGIQVLRYLKGTRDVGLKLSKNPVAQDSLVGYADADWASCPESRRSVSGNLILL 1187
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A0J7JWL9_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7JWL9_LASNI) HSP 1 Score: 68.2 bits (165), Expect = 5.150e-12 Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1
Query: 4 TRPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCGVDMLVYADLDYATCQDDRRSVSGGAVLL 237
TRPD+A A + FC NP +H + ++L+Y+ RT D GITY+ +DC M Y D D+A +DRRS SG ++L
Sbjct: 31 TRPDLAFAASALSRFCTNPEEAHWKLAKRVLRYLQRTIDYGITYT-KDCE-KMRAYVDSDWAGDVEDRRSCSGNVIIL 106
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Match: A0A2N9EBY4_FAGSY (Integrase catalytic domain-containing protein n=4 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EBY4_FAGSY) HSP 1 Score: 69.3 bits (168), Expect = 5.910e-12 Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 1
Query: 4 TRPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCGVDMLVYADLDYATCQDDRRSVSGGAVLL 237
TRPDIA A+ F +P + H RA K+L+Y+ RT D +TY D ++++ YAD DYA C DD +S SG +L
Sbjct: 949 TRPDIAFAISVLGRFQSDPSMDHWRAAKKVLRYLQRTKDFMLTYRHSDL-LEVVGYADADYAGCADDLKSTSGYVFML 1025 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17524.4152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17524.4152.1 >prot_H-paniculata_contig17524.4152.1 ID=prot_H-paniculata_contig17524.4152.1|Name=mRNA_H-paniculata_contig17524.4152.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp MTRPDIAHAVRTTATFCENPGVSHKRAVVKILQYVLRTADLGITYSGQDCback to top mRNA from alignment at H-paniculata_contig17524:1380..1619- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17524.4152.1 ID=mRNA_H-paniculata_contig17524.4152.1|Name=mRNA_H-paniculata_contig17524.4152.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at H-paniculata_contig17524:1380..1619- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17524:1380..1619- >mRNA_H-paniculata_contig17524.4152.1 ID=mRNA_H-paniculata_contig17524.4152.1|Name=mRNA_H-paniculata_contig17524.4152.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig17524:1380..1619- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |