mRNA_H-paniculata_contig17522.4151.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17522.4151.1
Unique NamemRNA_H-paniculata_contig17522.4151.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17522.4151.1 vs. uniprot
Match: D7FJF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJF2_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 1.350e-50
Identity = 81/111 (72.97%), Postives = 96/111 (86.49%), Query Frame = 1 
Query:    1 AAAVFCILSELSWRQLRTYFVVPALWIFTVCTMIGAVYILIAKLLIDRP--GPNSTETNDFWGLALVSFWMSIVLLLDRNNVVGVFRGYTSLSLEHERDKEGHVQMGEVVL 327
            AAAVFCILSELSWRQLRT+FV+P LW+FT+C+ IGA Y+LIA+LL+     G +  +  DF+GL LVSFWMSIVLLLDR+NVVGVFRGYTSL+ EHERD+EGHVQMGEVV+
Sbjct:    9 AAAVFCILSELSWRQLRTFFVLPTLWVFTLCSWIGAAYVLIAQLLVGHAEGGASGEDAMDFYGLLLVSFWMSIVLLLDRHNVVGVFRGYTSLT-EHERDREGHVQMGEVVI 118
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BLAST of mRNA_H-paniculata_contig17522.4151.1 vs. uniprot
Match: A0A6H5JWR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWR3_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 2.670e-46
Identity = 78/110 (70.91%), Postives = 93/110 (84.55%), Query Frame = 1 
Query:    4 AAVFCILSELSWRQLRTYFVVPALWIFTVCTMIGAVYILIAKLLIDRP--GPNSTETNDFWGLALVSFWMSIVLLLDRNNVVGVFRGYTSLSLEHERDKEGHVQMGEVVL 327
            AAVFCILSELSWR LRT+ V+P LW+FT+C+ IGA Y+LIA+LL+     G +  +  DF+GL LVSFWMSIVLLLDR+NVVGVFRGYTSL+ EHERD+EGHVQMGEVV+
Sbjct:  104 AAVFCILSELSWRHLRTFLVLPTLWMFTLCSWIGAGYVLIAQLLVGHAEGGASGEDAMDFYGLLLVSFWMSIVLLLDRHNVVGVFRGYTSLT-EHERDREGHVQMGEVVI 212
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17522.4151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJF2_ECTSI1.350e-5072.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWR3_9PHAE2.670e-4670.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17522contigH-paniculata_contig17522:1752..3370 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_006120.1
Exons3
Model size330
Cds size330
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17522.4151.1prot_H-paniculata_contig17522.4151.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17522 1752..3370 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929375.233755-CDS-H-paniculata_contig17522:1751..18541622929375.233755-CDS-H-paniculata_contig17522:1751..1854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17522 1752..1854 +
1691480836.262243-CDS-H-paniculata_contig17522:1751..18541691480836.262243-CDS-H-paniculata_contig17522:1751..1854Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17522 1752..1854 +
1622929375.2469568-CDS-H-paniculata_contig17522:2440..25671622929375.2469568-CDS-H-paniculata_contig17522:2440..2567Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17522 2441..2567 +
1691480836.274482-CDS-H-paniculata_contig17522:2440..25671691480836.274482-CDS-H-paniculata_contig17522:2440..2567Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17522 2441..2567 +
1622929375.2615943-CDS-H-paniculata_contig17522:3270..33701622929375.2615943-CDS-H-paniculata_contig17522:3270..3370Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17522 3271..3370 +
1691480836.282874-CDS-H-paniculata_contig17522:3270..33701691480836.282874-CDS-H-paniculata_contig17522:3270..3370Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17522 3271..3370 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17522.4151.1

>prot_H-paniculata_contig17522.4151.1 ID=prot_H-paniculata_contig17522.4151.1|Name=mRNA_H-paniculata_contig17522.4151.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
AAAVFCILSELSWRQLRTYFVVPALWIFTVCTMIGAVYILIAKLLIDRPG
PNSTETNDFWGLALVSFWMSIVLLLDRNNVVGVFRGYTSLSLEHERDKEG
HVQMGEVVL*
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mRNA from alignment at H-paniculata_contig17522:1752..3370+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17522.4151.1 ID=mRNA_H-paniculata_contig17522.4151.1|Name=mRNA_H-paniculata_contig17522.4151.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1619bp|location=Sequence derived from alignment at H-paniculata_contig17522:1752..3370+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGCCGCGGTCTTCTGCATCCTGTCCGAGCTGAGTTGGAGACAGCTCAG
AACCTACTTCGTCGTGCCCGCTTTGTGGATCTTCACGGTTTGCACCATGA
TCGGTGAGACTTGCTACTCCCCCACGTTTTTTTTAGTTGGCTGATACTGT
CTAGGTGTCCGCTGATTTCCATCATCACAACAGCGCTATTCACTGTTTTC
TCAGTCCTGAAGCACTTGTCTAGGATGGTGAGGATAGGCTATACACAGTA
GCGGGTAGAGCTGGATGTTGGAAAATATGGTGGCGATAGGGATGTGATGC
TGGAGAGAATGCCGCGTCCGAGTGGCGGTTAATGGCAACGTGGCGGTAAC
CTTGCCCACTCCGTAACACCGGCAGTAGCAGCTGTGACCTTGCTTTCACA
CATGAAGACGCGAGCACGCCAAAAGTCGTCGCCCGGAAGTGCCTCTATCC
CGCGAGAATCATATGACACCGTCAGAACCGACTACATTGCGTACATCTGC
GAACTATATAATTTTTTATGGTGTCGATCTCTTATCCTTCCATTTTGAGT
ACCATTGTTTGAAGCTCAGCAGTTCGAGGGCAATGCCCTTTCTCCCTTCC
TTCCCATCCATTGATTGGTTTCCCCGTCCCTCGTCCCCCGTCCCCGCCCG
CGTGCATACCGTTTGCCTCAACATGTACTTTATTCTAAGGTGCCGTGTAT
ATCTTGATAGCAAAGTTGTTGATAGACCGCCCAGGACCTAACTCGACGGA
GACGAACGACTTCTGGGGCCTGGCGCTCGTATCCTTTTGGATGTCGATCG
TTCTCCTTTTGGACCGGTAAGTTCGTTTGCCTTTTGCAAGGCGAGATGTG
GTGTAGTGAGGACGAGGCGTTCAGGCACCGATTCCCACTTAGATGTCCAT
TGCAGTTTAAAACGTAGCGTTGCCCTTGTGTGCACATGTGTTCAGTGCAG
GGGTGACCTGTTTGGCTGGTTTGTCTTTTAAGCTTGAAATTTTATATGAC
TGTGCCACTGTGTCATTGGGGACTGTACCTCTCTGCGGGAATGGAATCGA
GGTAGACGTGTAGTGTATGTTATGGACAGGTCTATTTACGACGCCATGCG
CCCCACAGGCTTTTCGCGAGAGGTAGTCACGCGTTGCCCTGTACAATATT
TTTGTATTTTTTTTCCGGTTGACGTCGGCCTGCACCCCGTGTTCAGTGTT
ATTATTGAAAAAGCTTTCGTTGTTTCCTCAAGAAGCACATGTTTAAGGTA
ATCACTCGCTATATATGTTAGTACTTGGGTTCTTTAAGTGCGCAGATCAC
AGATCACCCGCAGTGTTTCATATACAAGCTGTGCCTTTCCTAATGCGGCA
GATATGTATCCATGGATGGGAAATTACGAATGAGTCGATTAGCCTAGTGT
ATTGAATATCTGGATCTAGAGATGTCGCGCGGGAATATGCCTTTTGCACT
GATGACATACTCTCCTTCCTTGGTCCCCTCGTTCACCTTGTACTGTTACC
CTTTTGCCTTCCTCTCCAGCAATAATGTCGTCGGGGTATTCCGAGGCTAT
ACTAGCCTTAGCCTGGAGCACGAAAGGGACAAAGAAGGGCATGTTCAGAT
GGGAGAAGTAGTGCTGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig17522:1752..3370+

>mRNA_H-paniculata_contig17522.4151.1 ID=mRNA_H-paniculata_contig17522.4151.1|Name=mRNA_H-paniculata_contig17522.4151.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig17522:1752..3370+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCAGCCGCGGTCTTCTGCATCCTGTCCGAGCTGAGTTGGAGACAGCTCAG
AACCTACTTCGTCGTGCCCGCTTTGTGGATCTTCACGGTTTGCACCATGA
TCGGCAGCCGCGGTCTTCTGCATCCTGTCCGAGCTGAGTTGGAGACAGCT
CAGAACCTACTTCGTCGTGCCCGCTTTGTGGATCTTCACGGTTTGCACCA
TGATCGGTGCCGTGTATATCTTGATAGCAAAGTTGTTGATAGACCGCCCA
GGACCTAACTCGACGGAGACGAACGACTTCTGGGGCCTGGCGCTCGTATC
CTTTTGGATGTCGATCGTTCTCCTTTTGGACCGGTGCCGTGTATATCTTG
ATAGCAAAGTTGTTGATAGACCGCCCAGGACCTAACTCGACGGAGACGAA
CGACTTCTGGGGCCTGGCGCTCGTATCCTTTTGGATGTCGATCGTTCTCC
TTTTGGACCGCAATAATGTCGTCGGGGTATTCCGAGGCTATACTAGCCTT
AGCCTGGAGCACGAAAGGGACAAAGAAGGGCATGTTCAGATGGGAGAAGT
AGTGCTGTGACAATAATGTCGTCGGGGTATTCCGAGGCTATACTAGCCTT
AGCCTGGAGCACGAAAGGGACAAAGAAGGGCATGTTCAGATGGGAGAAGT
AGTGCTGTGA
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