mRNA_H-paniculata_contig1752.4150.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1752.4150.1 vs. uniprot
Match: D8LKG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG5_ECTSI) HSP 1 Score: 214 bits (545), Expect = 5.780e-52 Identity = 204/601 (33.94%), Postives = 289/601 (48.09%), Query Frame = 2
Query: 317 AGAGAAGRLLGHRSLLLHWEVKRHQAWWKKVLDRGLLTRLAEHASSKALLARTAA---------EHSHVALLKRAGDVLCERTKKRAGG--GKLSSLVDRAAQAAGGSVQDQELAAILCGCCDGW------RTDVLFTPLAVEDGHRSQRAPGAEGALASVVHADARWDALDLEVTRLSNRRGLGSSGTAYQVRKKAGAFTEAVGHTRRVGGKVVVHPDVEGGEPPVRLVDEIRRARQWHDRHSACFIPLAWAVSAAFAAKWECSG--GDADSVTRGEDSDNSGSRGGRGKGKKKGGSGGKA-------SVRRPSPSSVLALVAAFLDKESTAKGFISGSLKAMFGGGPRVSFGKINPNLGELLLLFMSFLKGLGT------------TQHTV--GALEL----------SGDGTVSQQQPSAAE---KRASQGDVRDRAIRLSVDGRAVQDITDVRVVSLLRRTCDSVQLALTPNAACGLPVWGNDPRWSLLGHVLGSSA-----ETGGVIEEVVDRGVPAASRCYLTWMDDLLEMCEEHDEGGMCTGLPGFTLTGSTTKQSSKAAAQLSKRHSADIRKARLADAAFVAATTPGGSLAAQ 1945
AG A LG R+ LH E+KRH+AWW+++L + +L LA+ SS + A H HV LL+ G GG G + +L AAG ++ +ELAAI+CG R V T +E+ R +R G A++ D +A R +RG G S V + G E+ G+VV+ + LV +++RA+ WHDRH ACF+P+AWAV AA AAKW G G V +N G+R RG G S + R+PSP S+LAL+AAFLDK+S A+G KA FG GP + K NPN+GE+ L F S+++ LG T + + G LE+ + G Q+ AE + + G + IR+ V G+ ++D+ D +VS LRR C +++ +LTP+ A GLPVWG D RWSLLG L S E+ G + + + G P+ YL WM+ L+MC M G+ GF +TG + +A A L ++H+AD+ +AR AD F AA GS AA+
Sbjct: 9 AGESEAVLALGSRTTTLHPELKRHRAWWREILSKNVLRALADRVSSPPAAEKGHAPSSLLVEGERHPHVDLLEDLGAFFSAGGTIDGGGASGVVGALATVVGDAAGSDLESKELAAIICGSGKHLGTVRLVRKAVRGTKPLIEE-LRDERLSKL-GLTAAIGGYDDTVEASTAYEVRRLPQRGRGGS-----VLQPGGGGDESS------SGRVVLLQCNNLDDKVAALVTKVKRAKCWHDRHPACFLPVAWAVCAAVAAKWPTDGDLGGGAGVMW----ENGGARNRRG-----GVSAARVLERARARKARQPSPFSILALLAAFLDKDSKARGVS----KATFGAGPSPTCAKHNPNIGEIFLRFCSYVRQLGVKPGRRKSAGPPATMNLLDSGELEMWWSAAAAVAATPKGKKPQRSDRGAETEPEEIAMGQDQADLIRVQVGGKVLEDLVDAALVSGLRRACAAIEQSLTPDGARGLPVWGQDIRWSLLGFALEQSQGENDEESEGRVGKKKE-GQPS----YLDWMEIRLQMCMNDGIDEM-PGMYGFNVTG-RAPLAPEAIANLDRQHAADVLQARTADVVFSAALQVHGSAAAE 576
BLAST of mRNA_H-paniculata_contig1752.4150.1 vs. uniprot
Match: A0A6H5KUD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUD4_9PHAE) HSP 1 Score: 140 bits (354), Expect = 1.610e-29 Identity = 124/359 (34.54%), Postives = 172/359 (47.91%), Query Frame = 2
Query: 899 GKVVVHPDVEGGEPPVRLVDEIRRARQWHDRHSACFIPLAWAVSAAFAAKW----ECSGGDADSVTRGEDSDNSGSRGGRGKGKKKGGSGGKASVRRPSPSSVLALVAAFLDKESTAKGFISGSLKAMFGGGPRVSFGKINPNLGELLLLFMSFLKGLGTTQHTVGALELSGDGTVSQQQPSAAEKRASQGDVRDRAIRLSVDGRAVQDITDVRVVSLLRRTCDSVQLALTPNAACGLPVWGNDPRWSLLGHVLGSSA------ETGGVIEEVVDRGVPAASRCYLTWMDDLLEMCEEHDEGGMCTGLPGFTLTGSTTKQSSKAAAQLSKRHSADIRKARLADAAFVAATTPGGSLAAQ 1945
G+VV+ + LV +++RA+ WHDRH ACF+P+AWAV AA AAKW + GG S G G R R + +K RRPSP S+LAL+AAFLDK G G K+ GP + ++ GEL + + + A+ + G Q+ AE + V G+ ++D+ D + S LRR C +++ +LTP+ A GLPVWG D RWSLLG S GGV E+ G P+ YL WM+ L+MC M G+ GF +TG + +A A L ++H+AD+ +AR AD F AA GG Q
Sbjct: 76 GRVVLLQFKNLDDEVAALVTKVKRAKCWHDRHPACFLPVAWAVCAAVAAKWPSDGDLGGGPGASCEHGAP----GCRLARARARK---------ARRPSPFSILALLAAFLDK----LGVKPGRRKSA---GPPATLNLLDS--GELEMWWSA-----------AAAVAAAPKGKKPQRSDREAEAETGE------LATGQVGGKVLEDLVDAALASDLRRACAAIEQSLTPDGARGLPVWGQDIRWSLLGFAFEQSEGENDEESEGGVGEK--REGRPS----YLDWMEIRLQMCMNEGIDEM-PGMYGFNVTG-RAPLAPEAIANLDRQHAADVLQARTADVVFSAALQVGGGSQGQ 387 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1752.4150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1752.4150.1 >prot_H-paniculata_contig1752.4150.1 ID=prot_H-paniculata_contig1752.4150.1|Name=mRNA_H-paniculata_contig1752.4150.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1636bp MTSDGGPATGAAGAGAGAAGRLLGHRSLLLHWEVKRHQAWWKKVLDRGLLback to top mRNA from alignment at H-paniculata_contig1752:6059..23505+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1752.4150.1 ID=mRNA_H-paniculata_contig1752.4150.1|Name=mRNA_H-paniculata_contig1752.4150.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=17447bp|location=Sequence derived from alignment at H-paniculata_contig1752:6059..23505+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1752:6059..23505+ >mRNA_H-paniculata_contig1752.4150.1 ID=mRNA_H-paniculata_contig1752.4150.1|Name=mRNA_H-paniculata_contig1752.4150.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=9816bp|location=Sequence derived from alignment at H-paniculata_contig1752:6059..23505+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |