mRNA_H-paniculata_contig17516.4149.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17516.4149.1
Unique NamemRNA_H-paniculata_contig17516.4149.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17516.4149.1 vs. uniprot
Match: D7G2G8_ECTSI (Glucose-methanol-choline oxidoreductase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2G8_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 5.630e-33
Identity = 68/103 (66.02%), Postives = 78/103 (75.73%), Query Frame = 1
Query:   25 DYVDCDFLIIGAGSSGCVLASRLVRQGLKVVLVEGGPADTK---KLLRPPHEWMFAASCGDELSENFMTVPQSNLNNRQVPAFRGRGGGGSSNVNASLYVRGR 324
            D VDCDFLI+GAGSSGCVLASRLVR GLKV+LVE GPAD     K++  P  W+  AS G+ LSE F TVPQ+ L  R++PA+ G GGGGSSNVNA LY RGR
Sbjct:   10 DTVDCDFLIVGAGSSGCVLASRLVRAGLKVLLVEKGPADASTLAKVVGRPSGWVHQASSGEGLSEAFNTVPQAGLGYRELPAYNGVGGGGSSNVNAGLYQRGR 112          
BLAST of mRNA_H-paniculata_contig17516.4149.1 vs. uniprot
Match: A0A0B5DTM4_9RHOB (Glucose-methanol-choline oxidoreductase n=1 Tax=Celeribacter indicus TaxID=1208324 RepID=A0A0B5DTM4_9RHOB)

HSP 1 Score: 88.6 bits (218), Expect = 2.940e-18
Identity = 48/98 (48.98%), Postives = 66/98 (67.35%), Query Frame = 1
Query:   31 VDCDFLIIGAGSSGCVLASRLVRQG-LKVVLVEGGPADTKKLLRPPHEWMFAASCGDELSENFMTVPQSNLNNRQVPAFRGRGGGGSSNVNASLYVRG 321
            +DCD+LIIGAGS+GCVLA+RL      KV+L+E GP DT   ++ P   M     G + +  F + P+ NL+NR++P  RG+G GGSS++N  LYVRG
Sbjct:    2 LDCDYLIIGAGSAGCVLANRLSEDPEAKVMLLEAGPRDTSPWIKLP-AGMKKVFYGKKYNWGFESEPEPNLHNRRIPMARGKGLGGSSSINGMLYVRG 98          
BLAST of mRNA_H-paniculata_contig17516.4149.1 vs. uniprot
Match: A0A845A6J7_9SPHN (Choline dehydrogenase n=1 Tax=Altericroceibacterium indicum TaxID=374177 RepID=A0A845A6J7_9SPHN)

HSP 1 Score: 84.7 bits (208), Expect = 6.620e-17
Identity = 46/97 (47.42%), Postives = 62/97 (63.92%), Query Frame = 1
Query:   34 DCDFLIIGAGSSGCVLASRLVRQ-GLKVVLVEGGPADTKKLLRPPHEWMFAASCGDELSENFMTVPQSNLNNRQVPAFRGRGGGGSSNVNASLYVRG 321
            DCDFLI+GAGSSGCVLA+RL     +KV+L+E G +D   L+  P  WM  AS         MT P+ +++NR  P  RGR  GG S++N ++Y+RG
Sbjct:    3 DCDFLIVGAGSSGCVLANRLSEDPSVKVILLEAGGSDKHPLISMPMAWM-KASMEPRFGWGTMTEPEPHMDNRVQPLPRGRVLGGCSSINGTMYIRG 98          
BLAST of mRNA_H-paniculata_contig17516.4149.1 vs. uniprot
Match: L1JH16_GUITC (GMC_OxRdtase_N domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JH16_GUITC)

HSP 1 Score: 83.6 bits (205), Expect = 1.710e-16
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 1
Query:   37 CDFLIIGAGSSGCVLASRLVRQGLKVVLVEGGPADT--KKLLRPPHEWMFAASCGDELSENFMTVPQSNLNNRQVPAFRGRGGGGSSNVNASLYVRGR 324
            CD+L++G G S C L + L   G  VV+VE G A+   +K++  P  W  AAS G  +S  + TVPQ  + ++ +PAFRG G GG+ NVNA ++ RGR
Sbjct:   34 CDYLVVGGGCSSCSLVACLAAAGKSVVVVEAGGAEPWERKVVDDPQSWFAAASHGRPVSRLYRTVPQLAVLSKLMPAFRGEGFGGTGNVNACIWCRGR 131          
BLAST of mRNA_H-paniculata_contig17516.4149.1 vs. uniprot
Match: UPI001C99A7C8 (GMC family oxidoreductase N-terminal domain-containing protein n=1 Tax=Caenibius sp. WL TaxID=2872646 RepID=UPI001C99A7C8)

HSP 1 Score: 82.8 bits (203), Expect = 3.140e-16
Identity = 45/95 (47.37%), Postives = 63/95 (66.32%), Query Frame = 1
Query:   40 DFLIIGAGSSGCVLASRLVRQ-GLKVVLVEGGPADTKKLLRPPHEWMFAASCGDELSENFMTVPQSNLNNRQVPAFRGRGGGGSSNVNASLYVRG 321
            D++I+GAGS+GCVLA+RL    G KV+L+E GP DT   ++ P   +     G     +F TVPQ +LNNR++  + G+  GGSS+VNA LY+RG
Sbjct:    5 DYIIVGAGSAGCVLANRLSADPGKKVLLLEAGPPDTHPFIKMPAGMLELFKTGRH-HWHFTTVPQKHLNNREIMLYTGKTLGGSSSVNAMLYIRG 98          
BLAST of mRNA_H-paniculata_contig17516.4149.1 vs. uniprot
Match: A0A7I8VRG8_9ANNE (DgyrCDS5984 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8VRG8_9ANNE)

HSP 1 Score: 81.6 bits (200), Expect = 8.100e-16
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 1
Query:   22 VDYVDCDFLIIGAGSSGCVLASRLVRQGLKVVL-VEGGPADTKKLLRPPHEWMFAASCGDELSENFMTVPQSNLNNRQVPAFRGRGGGGSSNVNASLYVRG 321
            +D    D++I+GAGS+GCVLA+RL   G + VL +E GP D+   +R P   M+   C D  +  + T+PQ N+NNR     RGR  GGSS++NA  YVRG
Sbjct:   27 IDKTVFDYVIVGAGSAGCVLANRLSEDGKRTVLSIEAGPKDSSWKIRMPAALMYNL-CDDTYNWYYHTIPQKNMNNRVFYWPRGRVWGGSSSLNAMAYVRG 126          
BLAST of mRNA_H-paniculata_contig17516.4149.1 vs. uniprot
Match: UPI001EF506CD (GMC family oxidoreductase N-terminal domain-containing protein n=1 Tax=Mesorhizobium sp. IRAMC:0171 TaxID=2912854 RepID=UPI001EF506CD)

HSP 1 Score: 79.3 bits (194), Expect = 1.270e-15
Identity = 40/95 (42.11%), Postives = 62/95 (65.26%), Query Frame = 1
Query:   40 DFLIIGAGSSGCVLASRLVRQGLKVVLVEGGPADTKKLLRPPHEWMFAASCGDELSENFMTVPQSNLNNRQVPAFRGRGGGGSSNVNASLYVRGR 324
            D+++ GAGSSGC +A+RLV  G +V+L+E GP D  K +  P    FA   G + S  + + P++N+  R++P  +GR  GG S++NA LY+RG+
Sbjct:    6 DYIVAGAGSSGCTVANRLVTAGKRVLLLEAGPRDNDKFIHMPAT--FAKVIGTKRSFIYESEPETNVGGRRLPIPQGRTLGGGSSINAMLYIRGQ 98          
BLAST of mRNA_H-paniculata_contig17516.4149.1 vs. uniprot
Match: A0A420ER19_9SPHN (Choline dehydrogenase n=1 Tax=Altericroceibacterium spongiae TaxID=2320269 RepID=A0A420ER19_9SPHN)

HSP 1 Score: 80.9 bits (198), Expect = 1.500e-15
Identity = 43/97 (44.33%), Postives = 62/97 (63.92%), Query Frame = 1
Query:   34 DCDFLIIGAGSSGCVLASRLVRQ-GLKVVLVEGGPADTKKLLRPPHEWMFAASCGDELSENFMTVPQSNLNNRQVPAFRGRGGGGSSNVNASLYVRG 321
            +CDF+++GAGS+GCVLASRL     +KVVL+E G +D   L+  P  WM  AS         MT P+ +++ R  P  RG+  GGSS++N ++Y+RG
Sbjct:    3 ECDFIVVGAGSAGCVLASRLSEDPSVKVVLLEAGGSDKHPLISMPMAWM-KASMEPRFGWGTMTEPEPHMDGRVQPLPRGKVLGGSSSINGTMYIRG 98          
BLAST of mRNA_H-paniculata_contig17516.4149.1 vs. uniprot
Match: R7Y127_9ACTN (Glucose-methanol-choline oxidoreductase n=2 Tax=Nocardioides TaxID=1839 RepID=R7Y127_9ACTN)

HSP 1 Score: 80.5 bits (197), Expect = 2.050e-15
Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = 1
Query:   34 DCDFLIIGAGSSGCVLASRLVRQGLKVVLVEGGPADTKKLLRPPHEWMFAASCGD-----ELSENFMTVPQSNLNNRQVPAFRGRGGGGSSNVNASLYVRG 321
            + D++++GAGS+GC +A RL   G  VVL+E G  DT  + + P   M A    +     +    F  VPQ+NLNNR+VPA RGR  GGSS+VN  ++VRG
Sbjct:   10 EADYVVVGAGSAGCAVAGRLADAGHSVVLLEAGGPDTSMMFKTPG--MIAMIHAEPKLKAKFDWGFYHVPQANLNNRKVPATRGRLMGGSSSVNGMIFVRG 108          
BLAST of mRNA_H-paniculata_contig17516.4149.1 vs. uniprot
Match: A0A836CG94_9STRA (GMC_OxRdtase_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG94_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.100e-15
Identity = 41/100 (41.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:   31 VDCDFLIIGAGSSGCVLASRLVRQGLKVVLVEGGPADTKKL--LRPPHEWMFAASCGDELSENFMTVPQSNLNNRQVPAFRGRGGGGSSNVNASLYVRGR 324
            +DC++L++G+G++GC   SRLVRQG KVVL+  G  D  +   ++ P  ++     G  L +   + PQ  L  R+   F GRGGGGS+ +NA +Y+RGR
Sbjct:   16 LDCEYLVVGSGAAGCAFVSRLVRQGAKVVLLTDGSIDAFRDPGIQAPASFLSNLQRGWPLCDPHFSAPQPQLAGRRSLTFVGRGGGGSTLINACIYIRGR 115          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17516.4149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2G8_ECTSI5.630e-3366.02Glucose-methanol-choline oxidoreductase n=2 Tax=Ec... [more]
A0A0B5DTM4_9RHOB2.940e-1848.98Glucose-methanol-choline oxidoreductase n=1 Tax=Ce... [more]
A0A845A6J7_9SPHN6.620e-1747.42Choline dehydrogenase n=1 Tax=Altericroceibacteriu... [more]
L1JH16_GUITC1.710e-1643.88GMC_OxRdtase_N domain-containing protein n=1 Tax=G... [more]
UPI001C99A7C83.140e-1647.37GMC family oxidoreductase N-terminal domain-contai... [more]
A0A7I8VRG8_9ANNE8.100e-1645.54DgyrCDS5984 n=1 Tax=Dimorphilus gyrociliatus TaxID... [more]
UPI001EF506CD1.270e-1542.11GMC family oxidoreductase N-terminal domain-contai... [more]
A0A420ER19_9SPHN1.500e-1544.33Choline dehydrogenase n=1 Tax=Altericroceibacteriu... [more]
R7Y127_9ACTN2.050e-1544.55Glucose-methanol-choline oxidoreductase n=2 Tax=No... [more]
A0A836CG94_9STRA2.100e-1541.00GMC_OxRdtase_N domain-containing protein n=1 Tax=T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17516contigH-paniculata_contig17516:195..521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.6
Seed ortholog evalue4.5e-28
Seed eggNOG ortholog2880.D7G2G8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.flavin adenine dinucleotide binding
EggNOG OGsCOG2303@1,KOG1238@2759
Ec32 ortholog descriptionGlucose-methanol-choline oxidoreductase
Ec32 orthologEc-00_005920.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size327
Cds size327
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929374.9058664-CDS-H-paniculata_contig17516:194..5211622929374.9058664-CDS-H-paniculata_contig17516:194..521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17516 195..521 -
1691480836.0946305-CDS-H-paniculata_contig17516:194..5211691480836.0946305-CDS-H-paniculata_contig17516:194..521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17516 195..521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17516.4149.1prot_H-paniculata_contig17516.4149.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17516 195..521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17516.4149.1

>prot_H-paniculata_contig17516.4149.1 ID=prot_H-paniculata_contig17516.4149.1|Name=mRNA_H-paniculata_contig17516.4149.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MPGGATWVDYVDCDFLIIGAGSSGCVLASRLVRQGLKVVLVEGGPADTKK
LLRPPHEWMFAASCGDELSENFMTVPQSNLNNRQVPAFRGRGGGGSSNVN
ASLYVRGR*
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mRNA from alignment at H-paniculata_contig17516:195..521-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17516.4149.1 ID=mRNA_H-paniculata_contig17516.4149.1|Name=mRNA_H-paniculata_contig17516.4149.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=327bp|location=Sequence derived from alignment at H-paniculata_contig17516:195..521- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAGGAGGCGCAACCTGGGTCGACTATGTAGATTGCGACTTTCTCAT CATAGGAGCAGGTTCAAGCGGATGCGTCCTGGCATCCAGGCTGGTGCGTC AAGGCCTAAAGGTTGTTTTGGTCGAGGGGGGACCCGCGGACACGAAGAAG CTGCTGCGTCCACCTCATGAGTGGATGTTTGCAGCGTCTTGCGGGGATGA ATTGTCTGAGAATTTCATGACGGTGCCCCAATCCAACTTGAACAACCGCC AAGTGCCTGCTTTTAGAGGCAGGGGAGGTGGCGGCAGTAGCAACGTGAAC GCTTCTCTTTACGTGCGAGGAAGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig17516:195..521-

>mRNA_H-paniculata_contig17516.4149.1 ID=mRNA_H-paniculata_contig17516.4149.1|Name=mRNA_H-paniculata_contig17516.4149.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig17516:195..521- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAGGAGGCGCAACCTGGGTCGACTATGTAGATTGCGACTTTCTCAT
CATAGGAGCAGGTTCAAGCGGATGCGTCCTGGCATCCAGGCTGGTGCGTC
AAGGCCTAAAGGTTGTTTTGGTCGAGGGGGGACCCGCGGACACGAAGAAG
CTGCTGCGTCCACCTCATGAGTGGATGTTTGCAGCGTCTTGCGGGGATGA
ATTGTCTGAGAATTTCATGACGGTGCCCCAATCCAACTTGAACAACCGCC
AAGTGCCTGCTTTTAGAGGCAGGGGAGGTGGCGGCAGTAGCAACGTGAAC
GCTTCTCTTTACGTGCGAGGAAGGTAGATGCCAGGAGGCGCAACCTGGGT
CGACTATGTAGATTGCGACTTTCTCATCATAGGAGCAGGTTCAAGCGGAT
GCGTCCTGGCATCCAGGCTGGTGCGTCAAGGCCTAAAGGTTGTTTTGGTC
GAGGGGGGACCCGCGGACACGAAGAAGCTGCTGCGTCCACCTCATGAGTG
GATGTTTGCAGCGTCTTGCGGGGATGAATTGTCTGAGAATTTCATGACGG
TGCCCCAATCCAACTTGAACAACCGCCAAGTGCCTGCTTTTAGAGGCAGG
GGAGGTGGCGGCAGTAGCAACGTGAACGCTTCTCTTTACGTGCGAGGAAG
GTAG
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