mRNA_H-paniculata_contig17511.4148.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17511.4148.1
Unique NamemRNA_H-paniculata_contig17511.4148.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17511.4148.1 vs. uniprot
Match: D7FXH9_ECTSI (Centrosomal protein 120 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH9_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.300e-13
Identity = 37/58 (63.79%), Postives = 48/58 (82.76%), Query Frame = 2 
Query:  158 QDQALEEKWAVRETARRRDMTQAQQEYGKLEGKLRKALSKVEARERGLKTREEAWRTE 331
            +D+ALE+KW  RE  RRR+++ AQ +Y KLEGKLRKALS+V ARER LK REE+W+T+
Sbjct: 1037 KDEALEQKWEAREATRRRELSHAQADYSKLEGKLRKALSEVGARERQLKAREESWKTD 1094
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BLAST of mRNA_H-paniculata_contig17511.4148.1 vs. uniprot
Match: A0A835Z851_9STRA (DUF3668 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z851_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.640e-5
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 2 
Query:  158 QDQALEEKWAVRETARRRDMTQAQQEYGKLEGKLRKALSKVEAR 289
            +D ALE++WA R   RRR + QAQ EY +LEGKLR+AL+ VE R
Sbjct:  942 KDAALEQRWAQRXAERRRSLAQAQAEYARLEGKLRRALTDVEVR 985
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17511.4148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXH9_ECTSI1.300e-1363.79Centrosomal protein 120 n=1 Tax=Ectocarpus silicul... [more]
A0A835Z851_9STRA1.640e-559.09DUF3668 domain-containing protein n=1 Tax=Tribonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17511contigH-paniculata_contig17511:2975..5470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.9
Seed ortholog evalue3.6e-11
Seed eggNOG ortholog2880.D7FXH9
Preferred nameCEP120
KEGG koko:K16459
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005856,GO:0006810,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007097,GO:0007098,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008022,GO:0008150,GO:0008283,GO:0009987,GO:0010564,GO:0010638,GO:0010824,GO:0010825,GO:0015630,GO:0016043,GO:0021537,GO:0021543,GO:0021846,GO:0021987,GO:0022008,GO:0022027,GO:0022402,GO:0030154,GO:0030900,GO:0030953,GO:0031023,GO:0031122,GO:0031344,GO:0031346,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032886,GO:0033043,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044450,GO:0044464,GO:0045724,GO:0045787,GO:0046605,GO:0046607,GO:0046907,GO:0048513,GO:0048518,GO:0048522,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051493,GO:0051495,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0051726,GO:0060322,GO:0060491,GO:0061351,GO:0065007,GO:0070507,GO:0071840,GO:0090068,GO:0097435,GO:0120032,GO:0120034,GO:0120035,GO:1902017,GO:1902115,GO:1902117
EggNOG free text desc.interkinetic nuclear migration
EggNOG OGs2CMAG@1,2QPT0@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size332
Cds size231
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17511.4148.1prot_H-paniculata_contig17511.4148.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17511 2975..5370 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929374.8351088-CDS-H-paniculata_contig17511:2974..30611622929374.8351088-CDS-H-paniculata_contig17511:2974..3061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17511 2975..3061 -
1691480836.0682461-CDS-H-paniculata_contig17511:2974..30611691480836.0682461-CDS-H-paniculata_contig17511:2974..3061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17511 2975..3061 -
1622929374.8543332-CDS-H-paniculata_contig17511:5226..53701622929374.8543332-CDS-H-paniculata_contig17511:5226..5370Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17511 5227..5370 -
1691480836.0784712-CDS-H-paniculata_contig17511:5226..53701691480836.0784712-CDS-H-paniculata_contig17511:5226..5370Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17511 5227..5370 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929374.8698168-UTR-H-paniculata_contig17511:5370..54701622929374.8698168-UTR-H-paniculata_contig17511:5370..5470Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17511 5371..5470 -
1691480836.086113-UTR-H-paniculata_contig17511:5370..54701691480836.086113-UTR-H-paniculata_contig17511:5370..5470Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17511 5371..5470 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17511.4148.1

>prot_H-paniculata_contig17511.4148.1 ID=prot_H-paniculata_contig17511.4148.1|Name=mRNA_H-paniculata_contig17511.4148.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
MLLCIHVCDVVWLFCCGGRQDQALEEKWAVRETARRRDMTQAQQEYGKLE
GKLRKALSKVEARERGLKTREEAWRTE
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mRNA from alignment at H-paniculata_contig17511:2975..5470-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17511.4148.1 ID=mRNA_H-paniculata_contig17511.4148.1|Name=mRNA_H-paniculata_contig17511.4148.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2496bp|location=Sequence derived from alignment at H-paniculata_contig17511:2975..5470- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCTGTATCCTGAAGATCCGAAATTGATTTTCAGGAAAAGGCCTATTTC
CAATATAACCCAGGGTCCCCATCTCAAAGTTGGGTCCCCATTTCACCAAT
ATGCTGTTATGCATACATGTTTGTGATGTCGTGTGGCTCTTTTGTTGCGG
GGGGAGGCAGGACCAGGCCTTGGAAGAGAAGTGGGCCGTGAGGGAGACTG
CCCGACGGAGGGATATGACACAAGCGCAGCAGGAGTATGGAAAGGTGTGT
GATGAGGGATGGGAGGCGATGGTTCACTTAGCTACATCTTTACGAGTGTC
GGTGCTATTTCCCCTGATCATGGGGAAAGAGAGAAACGACGATATGTCAT
CATCATTGTCCAAGATCTACTAAGCCGCTAAGGCCTTTTGCCCACGAGAT
GTTTTCGGGCTTGTAGATAGCAGGTAGCTCCTGATATTTTGGATTTGGGG
TGTTTTAATATTTGAAATATTTATCTTGAACTAAATATTTGCTCATAGGG
CGTACGTGTGTGACCAGCAGCAGGCGCGGTGGAAAGTTGGAGTTGACAGT
ATTTTGGCGGGAGAGAGATGGATATGCTGTTGTGCCTATCTTCTCGCTCA
GTAGGAATGCTCTTGTTTTCAAACACCACCGATGTCGAACGGAGTGTATG
TCATTTTCCACTTGGTCGTGGAGGGAAAGGGTCGATCGGATTGTGTGCGG
GGGAAACAGTATTTGGTGGGTCTTCCCGACGCCTCAAGCGTAGAAGACCA
AAAAATTCTCTCATGTAATTCTATTGTGTTTGGTGTTCGATTCTTTTTTC
TTTTTTTTTCCCAACATTCATTGAATCGCCCTTTTAATGTCTTCGTCTTG
GGGAGCTTAATTTTCGTGACATGAAACCTGCTAACTTGTGTGGTGTTGTT
CTGCTACTGTACAAATTTGTCTCATATTGGGTAGCTCCATATGTTGCTTC
ATCCATTGCTAATTTTTTATACATGTCACGCTGTATCGAACCCTTATTGT
GAAGCACACACGTGGAATACACGTCACCCCCTTCTATTGGTCATAATCTA
ATTGTGCTGATAAGTGTACTGTAAACGAGTAGAATTTTGAAGTCAGCCCC
ATAACGTCAAGATGGGCACAGGGACCCATTATGTGAGAGCTTGAGAGCTT
TGGTTCAACCGACTAGGACAGGGTTTAACTTGAGATTTTCTTTTAGGGTT
ATATATATATATATATATATGTTTGCTGTTCATGTGGAAACTGTTTCATG
ATATACCTACAGTACAGTAACACATGCGAGTGATACAATGATACTCCATT
ATGAAGGTTGCCGTGGCTCATGTCGTGCGTGGTCGAAGAGGTGCATGAAG
TACTGGTATTTGCCCATGATGGGGTCAGAATTTGATATAGGGAACAGGAT
CCTTTCGGTGTACCACGCGGTATACTGCCCAATATCCGTCAAGTCTGGTT
GAAATTCAATTCGTATGGTGGGCATGCGTGATTTGTTGGGGATGAGCTGT
AGCAGTGGTGATGGGGGAGTAAGCACTTGTTCATGTACAGGTCTCTCAGC
GTAGTGTACTCCAAGGTCGCACACTGGAAGGTTAGCTAGGCCCTAGGCTA
TGGGCTGGCACTCCAAAACATGACTACACTATGCATGTAGGAGGGCTACA
CAATGAATGTTTCTCTATCCCCTATTTGCTGTCCTGTGTGTCATCACATG
CTTTGATGTTGTCCCGTGATTGAAGTATTTCGGCTGTACCTGTTGGTGAT
GAGAAATACTGTACATTAAGGCTAAAACGAGTATATGCATATTTTACATG
AAAATGTGACAAGCCTGAGGCATAAGATATGCCCCTCCAGGTTATACATG
GACACTTATTTAGATTCCCCGCACATTGTGAGGTTATATGTATTTATGTG
TAGAAATGAAGACACGTCCATTAGTCCCCTTGGTCATGATCTAGTGTTGC
TAAAAAATATACACATATTTCTTTAACTCCCGGAAGGCTAAGGCAAAAAC
CTCTATCCGATCCTACTAATAAGGGTATTGAAACCAACTGAACTTTGAAG
TTGGTCGAGTAATTATATGAGCTTTAGCTCCCCCCGCAACCCCACGACCG
AATAAAATTTTAACATTGGAAAAAATCAAAAGAGCTAATTGTCAAAGGCA
CTTTCATCTGTGCAATACCTGAAAAATATAAATAAAATCGAAAGTGACGA
TATAAGCTCCTGACTTTCCAAAAAAAGAAATGGTAAGATATCCCCCTCTT
GTGGTGGTAACGTACTTGTTATATCAAATAAATCAAAATTGTGTAACACC
ATTCGGTTAACGTCTATCTGATGAGCAGGATAATCTCTCAATATGGCGAT
ATATATATATATATATATTGATATTTTGAGATATAATCTATGACTATGAC
CTATCACAGTTGGAGGGAAAGCTGCGGAAGGCCTTGTCTAAGGTGGAGGC
AAGGGAGCGAGGGCTCAAAACTCGGGAAGAAGCCTGGAGGACAGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig17511:2975..5470-

>mRNA_H-paniculata_contig17511.4148.1 ID=mRNA_H-paniculata_contig17511.4148.1|Name=mRNA_H-paniculata_contig17511.4148.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig17511:2975..5470- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGTTATGCATACATGTTTGTGATGTCGTGTGGCTCTTTTGTTGCGG
GGGGAGGCAGGACCAGGCCTTGGAAGAGAAGTGGGCCGTGAGGGAGACTG
CCCGACGGAGGGATATGACACAAGCGCAGCAGGAGTATGGAAAGATGCTG
TTATGCATACATGTTTGTGATGTCGTGTGGCTCTTTTGTTGCGGGGGGAG
GCAGGACCAGGCCTTGGAAGAGAAGTGGGCCGTGAGGGAGACTGCCCGAC
GGAGGGATATGACACAAGCGCAGCAGGAGTATGGAAAGTTGGAGGGAAAG
CTGCGGAAGGCCTTGTCTAAGGTGGAGGCAAGGGAGCGAGGGCTCAAAAC
TCGGGAAGAAGCCTGGAGGACAGAATTGGAGGGAAAGCTGCGGAAGGCCT
TGTCTAAGGTGGAGGCAAGGGAGCGAGGGCTCAAAACTCGGGAAGAAGCC
TGGAGGACAGAA
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