mRNA_H-paniculata_contig175.4143.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig175.4143.1
Unique Name	mRNA_H-paniculata_contig175.4143.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig175.4143.1 vs. uniprot
Match: D7FGQ9_ECTSI (Dolichyldiphosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGQ9_ECTSI)

HSP 1 Score: 313 bits (802), Expect = 5.250e-104
Identity = 146/199 (73.37%), Postives = 165/199 (82.91%), Query Frame = 2

Query:   23 MVADPCNEDYAYLSLTVARYEKDDPLGKYMALFTLSPIYLAVAYATLVLVRRDLQTFILAFGHLCDLVVNKVLKTWFAEARPSGCVNAGHGMPSNHTQYMFFFASFATFYLWRRVSYCAEAKIGLSLAIIGWATIVGYSRMYLQCHTLKQVVAGAVVGTITGALWYLFYANIIAPMCPAVANWPLSRALFVKDYSQVAD 619
            MV DPC+EDYAYLSLTVARY K+D LGKYMAL TLSPIYLAVAY TLV+VRRDLQ F+LA GHL DLVVNK LKTW AEARP GC+N GHGMPSNH+QYMFFFASF + YLW RVS+ AEAK+GL+  + GWA  V YSRM LQCHTLKQV  GA VGT TG LWYL Y+ ++ P+ P VA WP+SRAL+VKDYSQV++
Sbjct:    1 MVVDPCDEDYAYLSLTVARYAKEDALGKYMALLTLSPIYLAVAYMTLVVVRRDLQVFVLAVGHLVDLVVNKALKTWIAEARPPGCINTGHGMPSNHSQYMFFFASFVSLYLWGRVSFSAEAKVGLTSVLAGWAASVAYSRMCLQCHTLKQVAVGAAVGTTTGGLWYLLYSKVLLPLLPRVAKWPISRALYVKDYSQVSN 199

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BLAST of mRNA_H-paniculata_contig175.4143.1 vs. uniprot
Match: A0A6G0XWR1_9STRA (Dolichyldiphosphatase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XWR1_9STRA)

HSP 1 Score: 149 bits (377), Expect = 1.000e-38
Identity = 80/199 (40.20%), Postives = 118/199 (59.30%), Query Frame = 2

Query:   26 VADPCNEDYAYLSLTVARYEKDDPLGKYMALFTLSPIYLAVAYATLVLVRRDLQTFILAFGHLCDLVVNKVLKTWFAEARPSGCVNAGHGMPSNHTQYMFFFASFATFYLWRRVSYCAEAKIGLSLA-IIGWATIVGYSRMYLQCHTLKQVVAGAVVGTITGALWYLFYANIIAPMCPAVANWPLSRALFVKDYSQVAD 619
            V++P        SLT   Y+  DPLG+ +AL TLSP+++ V YATL+L +RDL    +  G L + V N++LK    + RP G      GMPS H+Q+M FFA++   Y   R+S   E +  L++  +I  A +V +SR+ L  H++ QVV GA VG  TG LWY+   NI  P+ P +A+W +S+ LF++D S + D
Sbjct:  140 VSEPTGVLKKPFSLTWVMYDAADPLGQLLALVTLSPVFIMVMYATLILFQRDLHIIFMVLGQLVNEVFNQILKRTIDQKRPDGADMEDAGMPSAHSQFMAFFATYVVLYTSNRMSKRREWEHKLAIGGVILLALLVFFSRIRLGYHSVAQVVVGAAVGAGTGILWYIVLENIAMPLFPTIASWDISKLLFIRDCSHIPD 338

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BLAST of mRNA_H-paniculata_contig175.4143.1 vs. uniprot
Match: A0A485KZJ7_9STRA (Dolichyldiphosphatase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KZJ7_9STRA)

HSP 1 Score: 145 bits (365), Expect = 6.510e-37
Identity = 77/187 (41.18%), Postives = 111/187 (59.36%), Query Frame = 2

Query:   62 SLTVARYEKDDPLGKYMALFTLSPIYLAVAYATLVLVRRDLQTFILAFGHLCDLVVNKVLKTWFAEARPSGCVNAGHGMPSNHTQYMFFFASFATFYLWRRVSYCAEAKIGLSLA-IIGWATIVGYSRMYLQCHTLKQVVAGAVVGTITGALWYLFYANIIAPMCPAVANWPLSRALFVKDYSQVAD 619
            SLT   Y+ DDPLG+ +AL TLSP+++ V YATL+L +RDL    +  G L + V+N++LK    + RP G      GMPS H+Q+M FFA++   Y   R+S   E +   ++  +I  A +V  SR+ L  HT+ QVV GA VG  TG LWY+F  N+  P  PA+A+    +  F++D S + D
Sbjct:  155 SLTWVMYDVDDPLGQVLALVTLSPVFIMVMYATLILFQRDLHIIFMVLGQLVNEVINQILKRTIDQKRPDGADMEDAGMPSAHSQFMAFFATYVVLYTSNRMSKRREWEHKAAIVGVIALACLVFVSRIRLGYHTVAQVVVGAAVGAGTGILWYIFMENMAIPHFPAIASSSFCQQFFIRDASHIGD 341

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BLAST of mRNA_H-paniculata_contig175.4143.1 vs. uniprot
Match: K3X1C3_GLOUD (Dolichyldiphosphatase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1C3_GLOUD)

HSP 1 Score: 136 bits (342), Expect = 4.440e-35
Identity = 71/188 (37.77%), Postives = 113/188 (60.11%), Query Frame = 2

Query:   65 LTVARYEKDDPLGKYMALFTLSPIYLAVAYATLVLVRRDLQTFILAFGHLCDLVVNKVLKTWFAEARPSGCVNAGHGMPSNHTQYMFFFASFATFYLWRRVSYCAEAKIGLSLAIIG---WATIVGYSRMYLQCHTLKQVVAGAVVGTITGALWYLFYANIIAPMCPAVANWPLSRALFVKDYSQVAD 619
            LT   Y+  DPLG  MALFTLSP+++ V YATLV+ +RDL   ++  G L + V N++LK    ++RP G   +G GMPS H+Q++FFFA++   Y W+R++     ++  SL I+G    A +V  SR+ L  H+ +QV  GA+VG ++G  W+   A     + P +    L++  +++D S++ D
Sbjct:   15 LTWVVYDPADPLGALMALFTLSPVFIMVMYATLVVFQRDLDIIMMLVGQLLNEVANQILKRSIQQSRPEGARMSGSGMPSAHSQFIFFFAAYVVAYTWKRLN--THRRLEQSLTIVGAIVLAVVVCVSRIRLGYHSKEQVAVGALVGALSGLAWHGLVAKTSPWLFPLITESALAQFFYIRDISRIPD 200

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BLAST of mRNA_H-paniculata_contig175.4143.1 vs. uniprot
Match: UPI000C75D8C1 (dolichyldiphosphatase 1-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C75D8C1)

HSP 1 Score: 133 bits (334), Expect = 1.030e-33
Identity = 70/194 (36.08%), Postives = 109/194 (56.19%), Query Frame = 2

Query:   59 LSLTVARYEKDDPLGKYMALFTLSPIYLAVAYATLVLVRRDLQTFILAFGHLCDLVVNKVLKTWFAEARP--SGCVNAGHGMPSNHTQYMFFFASFATFYLWRRVSY---CAEA--KIGLSLAIIGWATIVGYSRMYLQCHTLKQVVAGAVVGTITGALWYLFYANIIAPMCPAVANWPLSRALFVKDYSQVAD 619
            LSLT   Y + D LG   A+++L+P+ + +  ATL   RRD+ TF L  G + + +       +FAEARP     V  GHGMPSNH+QYM+F +++   +L  R+ +   C E   K+   L I+  A ++ YSR+YL+ HT+ QVV G+V+G  +  +W+L    I  P  P +  W +S    V+D + + +
Sbjct:   17 LSLTYVEYPEGDKLGMVFAIYSLTPLVIVIILATLFFSRRDIHTFTLGIGVILNHIXXXXXXXYFAEARPIIRDVVFEGHGMPSNHSQYMWFVSTYLVLFLKYRLHHIGNCMETIWKVFCGLLILASAGLMAYSRVYLEYHTVSQVVWGSVIGAFSALVWFLITHYIFTPFYPTIVGWRISEFFLVRDCTSIPN 210

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BLAST of mRNA_H-paniculata_contig175.4143.1 vs. uniprot
Match: J9JJ95_ACYPI (Dolichyldiphosphatase n=16 Tax=Aphididae TaxID=27482 RepID=J9JJ95_ACYPI)

HSP 1 Score: 132 bits (333), Expect = 1.920e-33
Identity = 71/202 (35.15%), Postives = 114/202 (56.44%), Query Frame = 2

Query:   47 DYAYLSLTVARYEKDDPLGKYMALFTLSPIYLAVAYATLVLVRRDLQTFILAFGHLCDLVVNKVLKTWFAEARP----SGCVNAGHGMPSNHTQYMFFFASFATFYLWRRVSYCAEA-------KIGLSLAIIGWATIVGYSRMYLQCHTLKQVVAGAVVGTITGALWYLFYANIIAPMCPAVANWPLSRALFVKDYSQVAD 619
            D+  LSLT   Y K +  GK +ALF+L+P  +   + +L+L RRDL T    FG L + + N VLK    E RP    +  + + +GMPS+H+Q+M+FFAS+  ++ + R+ Y           K+  +++ I  A IV YSR++LQ HT KQV+ GA+ G I G +W+     ++ P  P V +W +S    ++D + + +
Sbjct:   16 DWVPLSLTFVEYPKGNIFGKLLALFSLTPFVILSGFISLILFRRDLHTITFFFGVLLNEICNTVLKHILREPRPLARNTNLLYSEYGMPSSHSQFMWFFASYMLYFTFIRLQYANNKAFKEFFWKVAGAVSCIAIACIVSYSRIFLQYHTWKQVIYGALFGIIIGTIWFTIINVVLTPYFPTVISWKISELFLLRDTTLIPN 217

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BLAST of mRNA_H-paniculata_contig175.4143.1 vs. uniprot
Match: A0A6J0CFE3_NEOLC (Dolichyldiphosphatase n=3 Tax=Diprioninae TaxID=410274 RepID=A0A6J0CFE3_NEOLC)

HSP 1 Score: 131 bits (330), Expect = 6.020e-33
Identity = 70/200 (35.00%), Postives = 117/200 (58.50%), Query Frame = 2

Query:   47 DYAYLSLTVARYEKDDPLGKYMALFTLSPIYLAVAYATLVLVRRDLQTFILAFGHLCDLVVNKVLKTWFAEARP--SGCVNAGHGMPSNHTQYMFFFASFATFYLWRRVSYCAEA-------KIGLSLAIIGWATIVGYSRMYLQCHTLKQVVAGAVVGTITGALWYLFYANIIAPMCPAVANWPLSRALFVKDYSQVAD 619
            ++  LSLT+  Y   D +GK++AL +L P  +   + TLVL RRDL T     G + + VVN  LK    EARP     +   +GMPS HTQ+M+FFA++AT +++ R+ +   +       +I +  + +G AT+V +SR+YLQ H++ QV+ G +VG   G++W+L    ++ P  P + +W +S  L ++D + + +
Sbjct:   25 EWVPLSLTLVEYPAGDLIGKFLALISLMPFAVIAGFLTLVLFRRDLHTIAFLGGVVVNEVVNFSLKHAIREARPIRREVIYTEYGMPSAHTQFMWFFATYATIFVFVRLHHNNNSTVSERFWRITIIASCVGVATLVAFSRIYLQYHSIAQVLCGVIVGIFVGSVWFLVTHLVLTPFFPIIVSWRISEYLLLRDTTLIPN 224

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BLAST of mRNA_H-paniculata_contig175.4143.1 vs. uniprot
Match: UPI0003F06086 (dolichyldiphosphatase 1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F06086)

HSP 1 Score: 131 bits (329), Expect = 7.070e-33
Identity = 72/201 (35.82%), Postives = 114/201 (56.72%), Query Frame = 2

Query:   59 LSLTVARYEKDDPLGKYMALFTLSPIYLAVAYATLVLVRRDLQTFILAFGHLCDLVVNKVLKTWFAEARPSG---CVNAGHGMPSNHTQYMFFFASFATFYLWRRVSYCAEAKIGLSLAIIGW-----------ATIVGYSRMYLQCHTLKQVVAGAVVGTITGALWYLFYANIIAPMCPAVANWPLSRALFVKDYSQVAD 619
            +SLT   Y + D +GK  A F+L P+++ V++ TL+  RR+L T     G L + +VN VLK    + RP      V + +GMPSNH+Q+M+FF  +   +++ R+ Y   +    SL  + W           A IV YSR+YL  HT +QV +GAVVG++   LW++F   ++ P+ P V +WPLS  L ++D + + +
Sbjct:   24 VSLTHVVYPEGDFVGKCFAWFSLLPVFIIVSFVTLIAFRRELHTITFFGGLLVNEIVNWVLKNIIRQPRPCREHEVVFSEYGMPSNHSQFMWFFGVYLVLFVYIRIQYSTSSTC--SLVDLAWKHVVAVGALLVAAIVTYSRVYLHYHTNRQVYSGAVVGSLVAVLWFIFTQLVLTPLFPVVVSWPLSERLMLRDSTLIPN 222

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BLAST of mRNA_H-paniculata_contig175.4143.1 vs. uniprot
Match: A0A024U4Q8_9STRA (Dolichyldiphosphatase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U4Q8_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.140e-32
Identity = 76/199 (38.19%), Postives = 113/199 (56.78%), Query Frame = 2

Query:   26 VADPCNEDYAYLSLTVARYEKDDPLGKYMALFTLSPIYLAVAYATLVLVRRDLQTFILAFGHLCDLVVNKVLKTWFAEARPSGCVNAGHGMPSNHTQYMFFFASFATFYLWRRVSYCAEAKIGLSLA-IIGWATIVGYSRMYLQCHTLKQVVAGAVVGTITGALWYLFYANIIAPMCPAVANWPLSRALFVKDYSQVAD 619
            V+D  ++     SLT   Y+ DDP G+ +AL TLSP+++ V YATL++ +RDL    L  G           +    + RP G      GMPS H+Q+M FFA++   Y   R+S   E +  L++  +I  A +V  SR+ L  H++ QV+ GA VG  TG LWY+F  NI  PM PA+A+W +S+ LF++D + + D
Sbjct:  140 VSDSSSQLKKPFSLTWVMYDVDDPFGQLLALVTLSPVFIMVMYATLLVFQRDLHIAFLLLG-----------QRTIDQKRPDGADMEDAGMPSAHSQFMAFFATYVVLYTSNRMSKRREWEQKLAIVGVIVLALLVFVSRIRLGYHSIAQVLVGATVGAGTGILWYIFMENIAMPMFPAIASWDISQRLFIRDCTHIPD 327

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BLAST of mRNA_H-paniculata_contig175.4143.1 vs. uniprot
Match: A0A2P8Y4S9_BLAGE (Dolichyldiphosphatase n=2 Tax=Blattodea TaxID=85823 RepID=A0A2P8Y4S9_BLAGE)

HSP 1 Score: 130 bits (327), Expect = 1.540e-32
Identity = 71/200 (35.50%), Postives = 116/200 (58.00%), Query Frame = 2

Query:   47 DYAYLSLTVARYEKDDPLGKYMALFTLSPIYLAVAYATLVLVRRDLQTFILAFGHLCDLVVNKVLKTWFAEARPS--GCVNAGHGMPSNHTQYMFFFASFATFYLWRRVSYCAEA-------KIGLSLAIIGWATIVGYSRMYLQCHTLKQVVAGAVVGTITGALWYLFYANIIAPMCPAVANWPLSRALFVKDYSQVAD 619
            ++  LSLT+  Y + D LGK +AL +L P  +   +  L+L RRDL T    FG   + ++N VLK  F EARP     +   +GMPS+H+Q+M+FFA++  ++++ R+ +           K  +++  +  A +V  SR+YLQ HT KQV++GA+VG + G+LW+     I  PM P V +W +S  L ++D + + +
Sbjct:   22 EWVPLSLTLVEYPQGDWLGKLLALSSLLPFGILSGFVALILFRRDLHTITFFFGTTLNEILNLVLKYTFCEARPMQRSALYTEYGMPSSHSQFMWFFATYMVYFVFIRLQHMNNNTLLENAWKTIITVGCVSMAALVTISRVYLQYHTWKQVLSGALVGFLFGSLWFALTYLIFTPMFPLVVSWRISEFLLLRDTTLIPN 221

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig175.4143.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig175.4143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FGQ9_ECTSI	5.250e-104	73.37	Dolichyldiphosphatase n=1 Tax=Ectocarpus siliculos...	[more]
A0A6G0XWR1_9STRA	1.000e-38	40.20	Dolichyldiphosphatase n=1 Tax=Aphanomyces euteiche...	[more]
A0A485KZJ7_9STRA	6.510e-37	41.18	Dolichyldiphosphatase n=1 Tax=Aphanomyces stellatu...	[more]
K3X1C3_GLOUD	4.440e-35	37.77	Dolichyldiphosphatase n=1 Tax=Globisporangium ulti...	[more]
UPI000C75D8C1	1.030e-33	36.08	dolichyldiphosphatase 1-like n=1 Tax=Eurytemora af...	[more]
J9JJ95_ACYPI	1.920e-33	35.15	Dolichyldiphosphatase n=16 Tax=Aphididae TaxID=274...	[more]
A0A6J0CFE3_NEOLC	6.020e-33	35.00	Dolichyldiphosphatase n=3 Tax=Diprioninae TaxID=41...	[more]
UPI0003F06086	7.070e-33	35.82	dolichyldiphosphatase 1-like n=1 Tax=Saccoglossus ...	[more]
A0A024U4Q8_9STRA	1.140e-32	38.19	Dolichyldiphosphatase n=1 Tax=Aphanomyces invadans...	[more]
A0A2P8Y4S9_BLAGE	1.540e-32	35.50	Dolichyldiphosphatase n=2 Tax=Blattodea TaxID=8582...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig175	contig	H-paniculata_contig175:29416..34137 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	312.4
Seed ortholog evalue	1.8e-82
Seed eggNOG ortholog	2880.D7FGQ9
Preferred name	DOLPP1
KEGG rclass	RC00002,RC00004,RC00014,RC00141
KEGG ko	ko:K01074,ko:K07252,ko:K08658
KEGG Reaction	R01004,R01274,R09845
KEGG Pathway	ko00062,ko00510,ko00900,ko01100,ko01130,ko01212,ko04142,map00062,map00510,map00900,map01100,map01130,map01212,map04142
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0002084,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006489,GO:0006490,GO:0006629,GO:0006638,GO:0006639,GO:0006643,GO:0006644,GO:0006651,GO:0006665,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006885,GO:0007035,GO:0008150,GO:0008152,GO:0008195,GO:0008474,GO:0008610,GO:0008654,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009507,GO:0009536,GO:0009856,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016311,GO:0016462,GO:0016787,GO:0016788,GO:0016790,GO:0016791,GO:0016817,GO:0016818,GO:0019538,GO:0019637,GO:0019725,GO:0022414,GO:0030003,GO:0030004,GO:0030148,GO:0030163,GO:0030176,GO:0030641,GO:0031224,GO:0031227,GO:0031984,GO:0032501,GO:0032502,GO:0034645,GO:0035601,GO:0036211,GO:0042157,GO:0042159,GO:0042175,GO:0042578,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044706,GO:0045017,GO:0045851,GO:0046339,GO:0046460,GO:0046463,GO:0046465,GO:0046467,GO:0046486,GO:0047874,GO:0048856,GO:0048868,GO:0048878,GO:0050801,GO:0051452,GO:0051453,GO:0051704,GO:0055067,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0070085,GO:0071704,GO:0090407,GO:0098599,GO:0098732,GO:0098734,GO:0098771,GO:0098827,GO:0140096,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576
EggNOG free text desc.	dolichyldiphosphatase activity
EggNOG OGs	COG0671@1,KOG3146@2759
Ec32 ortholog description	dolichyldiphosphatase
Ec32 ortholog	Ec-04_001210.1
EC	3.1.2.22,3.6.1.43
COG Functional cat.	I
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000,ko01002,ko01004
Exons	8
Model size	974
Cds size	711
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig175.4143.1	prot_H-paniculata_contig175.4143.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig175 29438..33896 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929373.8210104-UTR-H-paniculata_contig175:29415..29437	1622929373.8210104-UTR-H-paniculata_contig175:29415..29437	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig175 29416..29437 +
1691480835.6501777-UTR-H-paniculata_contig175:29415..29437	1691480835.6501777-UTR-H-paniculata_contig175:29415..29437	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig175 29416..29437 +
1622929373.9640021-UTR-H-paniculata_contig175:33896..34137	1622929373.9640021-UTR-H-paniculata_contig175:33896..34137	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig175 33897..34137 +
1691480835.7345939-UTR-H-paniculata_contig175:33896..34137	1691480835.7345939-UTR-H-paniculata_contig175:33896..34137	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig175 33897..34137 +

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig175:29416..34137+
coding sequence from alignment at H-paniculata_contig175:29416..34137+

protein sequence of mRNA_H-paniculata_contig175.4143.1

>prot_H-paniculata_contig175.4143.1 ID=prot_H-paniculata_contig175.4143.1|Name=mRNA_H-paniculata_contig175.4143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=237bp
MVADPCNEDYAYLSLTVARYEKDDPLGKYMALFTLSPIYLAVAYATLVLV
RRDLQTFILAFGHLCDLVVNKVLKTWFAEARPSGCVNAGHGMPSNHTQYM
FFFASFATFYLWRRVSYCAEAKIGLSLAIIGWATIVGYSRMYLQCHTLKQ
VVAGAVVGTITGALWYLFYANIIAPMCPAVANWPLSRALFVKDYSQVADA
CFVISRVASLVWPHFAYAIPKRFGSTIKRARWGRVK*

mRNA from alignment at H-paniculata_contig175:29416..34137+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig175.4143.1 ID=mRNA_H-paniculata_contig175.4143.1|Name=mRNA_H-paniculata_contig175.4143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4722bp|location=Sequence derived from alignment at H-paniculata_contig175:29416..34137+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGCCCGACCAGCTTGCGATCATGGTTGCAGATCCATGCAATGAAGATT
ACGCCTACCTCAGCTTGACGGTGCGTTGTTGCACACTGCTAGCAAGGGAT
ATTAAACGTCGTATTATATTGTGCAATGGACACAAAATGTGCAATTTGAT
TGGCATGTTAAATACTAAGAATATCCGCTGCCCATTGCGCCGCTTGTGTC
TTGGTAGGTGGCACGCTACGAGAAGGATGACCCACTCGGCAAGTACATGG
CTTTGTTCACGCTCTCTCCTATGTGAGTATGTCAAGCCGCGAGTTTCGTG
TAGAACACTAGAGAGTAGATGAAACAGATTGGTAACTGGGCAAGACAAGT
ATGTTAGTTGCGTTTCGCGTTTGGGTACACAGTGGATTGTGCAAGGAACA
AGGATTGTAGAGTATATAACAACGAAATTGAACCATTTGGGATCATAATG
CAAGCGTCTTTTACAGGCCAGCCCTTCTATCGTGCCGACCTAGGTTCTGG
CTGCGACTGTTACGCTCCCATAGACAATAGCACAATGTAGTCAGTACTAT
CGTTCGGTCTTTCTGTTGTCCTGTTTAACTGAACATGGCCTAACTGCGCA
ATGACTGCACTGTTGTGTGATTTACTCCACCTGACTAAAACTGTGGAACA
GCTATCTGGCCGTGGCCTACGCGACACTTGTGCTCGTTCGACGGGATCTT
CAGACATTCATCCTCGCTTTTGGACATGTGAGAGGGAGCGATAATGCACA
ACGTTACAGAAGTCATGCAGCAGACAGACGACCGTACACGCTTCAAGTAT
TGTACTGGTGCGCTAAATACATGGTACACTCCTGCCTTCTGCATGCCCCA
ATGTTGTGACAGTAAAACCGCGGGCATTGAGAATGGTATGAAAGAAACTA
CGTAAATCAACGCTCGTTCGCGGTTCAGATTTTCCATCACGATCCGCGAT
CCCTCCAATCTGCGATCGCTCTTTGTACTTTAATCCGTCAACGTAAACAC
CGTATGCAAGGTAACAGGTCGCAAAGGATCGCCTCCCAAGACAAAAAGCA
ATCGAATGGAGAACGCCTGCCGTGTTCTGTGGGGAGCCCCTGTGACTTGG
CCCAAATCGAAGCCCCGGTTGAAAGCCGCGACAGAACCGTTGAATATTGA
ATATAGAATTAAGGCTTCGAGAGTGTTGCTTTGTTTTGGTAATTGTGTGC
AGCGTTGAAAATGTGGTAAGTTGACCCTTGCCTTCATTCTCGGAATCCAC
CGCGTGTTGTGTACGACGATCTTCGTGGCGTTGGAAGCTGTGCGATCTTG
TGGTAAATAAGGTTCTCAAGACTTGGTTTGCGGAGGCAAGACCTTCCGGT
GAGTCGTGGTCAGAGGAAAGCACGGTAAGAAGACGACTGTAATCAGCGCG
TTCATTGCAACATTAGCATTTTCCCGGTTCAGCAATGCCGTCCAACGAGT
CTGGATATGTTTAGTTCGTAAAGCACAGTTCCGAACATAGCGTTCACGAT
TTGTACTCAACCTCATGCCCTTGTACATCCAGCCACCTCCCGGGATAAAC
GTGTCCACTGTACCCTGCTGTGCCCATGATATCTTGTCTCTGATGCGGGT
ATGAGTGTTACGACACTAATTGGCACTATCTGTCTTGAGGACTGATCCAA
GTTGTGTCGGGTGTTGAATGGTCGTACATGACAATGAAACACAGTCAGTT
TAGACCATCCTTGGGACATGCCAAGGAATGTTGCCGGGAGAGGTCTGTGG
GGCGGTCAGCGATCGAAAGGAAATGGTTACTGAGGCAAAGTTTCGATGAG
TGTAGCGCTACTAAAATCGTGAAAAACAGCACTAACAAGATTGTTTTTAT
TGTCGAAGATACCTTTCCAACAGACAAAATGGACTCTTCCCTCATAGGCA
ATGATACTCTCACTGTAGAATACTTCTCACAATATGTTTTTGTGTTGCTG
TGTTCGTGGTATCTACTGTTGCTGCTTGCGTCCTCTCCATTAGCAAGTCT
TGGTGTAGAGATGCAGTAAACGAGGTGAGGGAGGTCGCATGTACTCGACG
AGCCCTTTCATTGTCCTCTTCTAGACTCGCATCTATCAAGAAAATCTTAC
GGTATTCTCATATCATTCCTAAGAGCATGCCCTACGGACTGCACAGAATG
TTCTTTATCTGAACCACTGCAGAAGAATGTCTGGACGCTTCTTGAACACA
AGGTTCCCGTTCGAATGACTTTAATCTAAGGATGCGAAATTCGAAATCAA
AGATTCACGCGCAAGCGATAATGCCCTCGTGTGTTGGATGTCCCTCTCAA
TCTTATTGCGCAGGGTGCGTAAACGCCGGGCATGGGATGCCATCGAACCA
CACACAGTACATGTTCTTCTTTGCTTCCTTCGCGACCTTTTACCTCTGGA
GACGGTGAGAACTCTACAGCGACGGGATGTAGGCCATTTTTTTCACCCCT
GGCAGGGTCCAAGCCAGAAGTGTTGATCGACTTGAGGGAACGTTGCTTAG
TGCGAAGTAGTTCCGATGAACCTGCTGTTACCGAATCAACCCTGGCGATT
ATCCAAGTACAATATTTGAGTTTTCAAAGCTTGAAAAATGTTGATTTGGT
ATGCACCACTGTATTCCGTGAGCATACTCGGAGATGGTGTCGACTGGGCT
TAGAACTTTTGGTTGCACGGGTTTTGGGGTGACGGTTCTCTTTATCCCGT
TGAACGAAGTGTAAATTCTTCAGGACTAGGCGTTCGCCAACAAATAGAGT
TGTCCTGCCCGAATAGTTTTCCTCGTGATAGTGAGAGTTTGATGGCCTCC
GTATGATGCCCTACACTGCCGGTGAGCTTGGGGGCTACTGTGCTCTATAT
TATAATCGAGCTTCGGATCATAGTTGCCTCGTTTATATACTGCTCTGAGT
GGAGGACATACGACCTCTTTTCGTGTGACTTAAACTGGATTCTGGCGGCG
AGTGCGACGTATAGTCAGCTACTGCGGGTCCCTAGCTTTTAAGGTGGCCT
TAATTGTCGTTTACGTTCACAACTGACGAGCTCCTCGATGCCGTTCGCAA
TGTCTCAATAGGGTGTCTTACTGTGCAGAAGCAAAGATTGGGCTATCGCT
TGCCATCATCGGATGGGCGACCATAGTGGGTTACTCGAGGTGTGTCGAGC
TTTGAGGAGAACAGATGATTAAATCGTCGTACCGTCCCTGCACGGTGTAA
TTGCCGGTTGCCGAAATTTCCTTGGCCACCATTCGTATCCAGGAAAACGA
CCGACATGACTTTTTTTTCAACATTCGTCTCGAGTAAAATTGCACTATTC
AGTGCGGTTCATCGCGCCTGTCCGCCGCTGACAATGGTTGTCAAGTCCGG
AATGGGCTGACTGGGCATTTTGCGAAATTTGAGTAAATTTACGAAACTTT
ATTTTTCGCAATCACCTACCAAAGTCCCTCTTGCACCACCTCTTGTTTGG
GTGCGTAGGTGGGTTGAGTCTACGGCGTTTTGTGTTTTTTTATCAACTCT
CTAGGCTTGAATGTCATTGGAGCTTGTCCATTCATGAGCGTTAATGTCCA
CCTCGTGCTATATCCCATGTGGCAGGATGTATCTTCAATGTCATACCTTG
AAGCAAGTGGTCGCAGGTGCCGTCGTTGGTACCATCACGGGAGCATTATG
GTATTTGTTTTACGCAAATGTGAGACAAAAGCTGGTAGAAGTCTATTCCG
TACGATGTGTTGCTATTTTCTCCAGATGATTATCTTTTGCTCCAGCTTTA
CCTAAGGGTACGATCGAGGAGCAGTTCATACTTGAGTGCTGCGGTGCATA
CTCTAGTAACTGTGTGTAAATCCGTGTGTAGTGGTCGATCCGGATGCTCA
CGTAAAATCTCGAGCTACCTTCGAAGTAAATAGGGTGGTTATGTGTCAAG
AAATACCCAACGTGGTGATAAGTCCCTGTGTTAATAGTAACGTTGCAATA
GAAGGGCTCCGTTGACTGCTCTATGTTATACTTCCCTGAGTTTAACAAGT
TCCGTCATCATCACGCGTGGCAACTGAGCCCTGGTTTCGTTTTCAGGCTG
TACGTTAGGGGCCGCTATTTAACACTTCGCGCGTGTTGTTTTCTCTATCA
CCAGCTATGTGCTTTTATTTTTACATTCGCCAAGGGTGTCGCCGACAGAT
TGAAATGTTCTGTATTGGTATTCCTTTCAAAACCCTTTTCTTTATTTATT
GGCCGTTCAATGTGATGTGTACCCAATAGTTCATGGTTGCCCTGCCCCTT
TGAGCAACTCCGTTTCTGTCAATGCTGCCGCAGATTATTGCACCGATGTG
CCCGGCGGTGGCCAACTGGCCACTATCTCGAGCGCTATTTGTGAAGGACT
ACTCGCAGGTAGCGGATGCATGCTTTGTGATCAGTCGGGTCGCCTCCCTC
GTATGGCCGCATTTTGCATACGCAATACCCAAACGCTTTGGGTCGACGAT
AAAGAGAGCGAGATGGGGAAGAGTAAAATAGGTCTACGGCTTTCCCTTGT
TTTGCGCGAACCTGGCAGGCGCTCAAGAAAGTCCGATTTGAACTGCGGGG
ACGGGGGAGAGTAGGAGCACCCACTATGAGCGCAGATAAAACTGTGTGAT
GTAGGATGCTATTTAGCTGTGCACTGGAAGGGTTCACATGATGCTGTTCG
TCCCTTGCAAAACAGGTTTCTCACGCCTTGGCGTTCGAGCATGCAAATCT
CCATGGTGGTGTGTTCCGGGCG

Coding sequence (CDS) from alignment at H-paniculata_contig175:29416..34137+

>mRNA_H-paniculata_contig175.4143.1 ID=mRNA_H-paniculata_contig175.4143.1|Name=mRNA_H-paniculata_contig175.4143.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1422bp|location=Sequence derived from alignment at H-paniculata_contig175:29416..34137+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTGCAGATCCATGCAATGAAGATTACGCCTACCTCAGCTTGACGAT
GGTTGCAGATCCATGCAATGAAGATTACGCCTACCTCAGCTTGACGGTGG
CACGCTACGAGAAGGATGACCCACTCGGCAAGTACATGGCTTTGTTCACG
CTCTCTCCTATGTGGCACGCTACGAGAAGGATGACCCACTCGGCAAGTAC
ATGGCTTTGTTCACGCTCTCTCCTATCTATCTGGCCGTGGCCTACGCGAC
ACTTGTGCTCGTTCGACGGGATCTTCAGACATTCATCCTCGCTTTTGGAC
ATCTATCTGGCCGTGGCCTACGCGACACTTGTGCTCGTTCGACGGGATCT
TCAGACATTCATCCTCGCTTTTGGACATCTGTGCGATCTTGTGGTAAATA
AGGTTCTCAAGACTTGGTTTGCGGAGGCAAGACCTTCCGCTGTGCGATCT
TGTGGTAAATAAGGTTCTCAAGACTTGGTTTGCGGAGGCAAGACCTTCCG
GGTGCGTAAACGCCGGGCATGGGATGCCATCGAACCACACACAGTACATG
TTCTTCTTTGCTTCCTTCGCGACCTTTTACCTCTGGAGACGGGTGCGTAA
ACGCCGGGCATGGGATGCCATCGAACCACACACAGTACATGTTCTTCTTT
GCTTCCTTCGCGACCTTTTACCTCTGGAGACGGGTGTCTTACTGTGCAGA
AGCAAAGATTGGGCTATCGCTTGCCATCATCGGATGGGCGACCATAGTGG
GTTACTCGAGGGTGTCTTACTGTGCAGAAGCAAAGATTGGGCTATCGCTT
GCCATCATCGGATGGGCGACCATAGTGGGTTACTCGAGGATGTATCTTCA
ATGTCATACCTTGAAGCAAGTGGTCGCAGGTGCCGTCGTTGGTACCATCA
CGGGAGCATTATGGTATTTGTTTTACGCAAATGATGTATCTTCAATGTCA
TACCTTGAAGCAAGTGGTCGCAGGTGCCGTCGTTGGTACCATCACGGGAG
CATTATGGTATTTGTTTTACGCAAATATTATTGCACCGATGTGCCCGGCG
GTGGCCAACTGGCCACTATCTCGAGCGCTATTTGTGAAGGACTACTCGCA
GGTAGCGGATGCATGCTTTGTGATCAGTCGGGTCGCCTCCCTCGTATGGC
CGCATTTTGCATACGCAATACCCAAACGCTTTGGGTCGACGATAAAGAGA
GCGAGATGGGGAAGAGTAAAATAGATTATTGCACCGATGTGCCCGGCGGT
GGCCAACTGGCCACTATCTCGAGCGCTATTTGTGAAGGACTACTCGCAGG
TAGCGGATGCATGCTTTGTGATCAGTCGGGTCGCCTCCCTCGTATGGCCG
CATTTTGCATACGCAATACCCAAACGCTTTGGGTCGACGATAAAGAGAGC
GAGATGGGGAAGAGTAAAATAG