mRNA_H-paniculata_contig175.4141.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig175.4141.1
Unique NamemRNA_H-paniculata_contig175.4141.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig175.4141.1 vs. uniprot
Match: A0A6H5K0I4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0I4_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 6.020e-11
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 2 
Query:  134 AGVQDTALSEVMANLGIVPTKPVPNAVTVATPAWAGLEEQQDVSEALRLDAQDVLME*VTNTYV 325
            +G+QD  L EV+ANL IVP +P   AV  AT AWAGLEEQ +V +AL   AQDVL+E V + +V
Sbjct:   14 SGIQDQELCEVLANLDIVPGQPAHMAVVNATLAWAGLEEQTEVQQALHQGAQDVLLEKVDSIFV 77
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BLAST of mRNA_H-paniculata_contig175.4141.1 vs. uniprot
Match: A0A6H5KNH6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH6_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 5.580e-9
Identity = 53/152 (34.87%), Postives = 67/152 (44.08%), Query Frame = 2 
Query:  128 AGAGVQDTALSEVMANLGIVPTKPVPNAVTVATPAWAGLEEQQDVSEALRLDAQDVLME*VTNTYVRGRDQHF*R*GRTRR**RSRHYRARGRGGSGATSAIHEILVVLWPARELRGLDWQCRGKDHLRKARMLFLAAYAARPARQADNRHF 583
            +G GVQD+ L EV+ANL I P  P       A  AWAGLEEQ + +E L  DA+++ ME V NT+    +                           A  +  E+     P  +             LRKA+M FLAA  ARPARQ D R F
Sbjct:  548 SGPGVQDSELVEVLANLNIAPGAPAHPTAIKAVEAWAGLEEQPEFAETLSEDAKEIFMEKVNNTFKEDENISDXXXXXXX----XXXXXXXXXXXXKAPPSFAELADFFGPLEQYAESCGIGDAGHFLRKAKMAFLAATFARPARQLDIRVF 695
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BLAST of mRNA_H-paniculata_contig175.4141.1 vs. uniprot
Match: A0A6H5KEK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK9_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.350e-7
Identity = 50/152 (32.89%), Postives = 66/152 (43.42%), Query Frame = 2 
Query:  128 AGAGVQDTALSEVMANLGIVPTKPVPNAVTVATPAWAGLEEQQDVSEALRLDAQDVLME*VTNTYVRGRDQHF*R*GRTRR**RSRHYRARGRGGSGATSAIHEILVVLWPARELRGLDWQCRGKDHLRKARMLFLAAYAARPARQADNRHF 583
            +G GVQD+ L EV+ANL + P  P       A  AWAGLEEQ + +E    D++++ ME V NT+    +                           A  +  E+     P  +             LRKA+M FLAA  ARPARQ D R F
Sbjct:  492 SGPGVQDSELVEVLANLDVAPGAPAHPKAIKAVEAWAGLEEQPEFAETRSEDSKEIFMEKVNNTFKEDENISDXXXXXXX----XXXXXXXXXXXXXAPPSFAELADFFGPLEQYAESCGIGDAGHFLRKAKMAFLAATFARPARQLDIRVF 639
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BLAST of mRNA_H-paniculata_contig175.4141.1 vs. uniprot
Match: A0A6H5L286_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L286_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 3.030e-7
Identity = 51/152 (33.55%), Postives = 68/152 (44.74%), Query Frame = 2 
Query:  131 GAGVQDTALSEVMANLGIVPTKPVPNAVTVATPAWAGLEEQQDVSEALRLDAQDVLME*VTNTYVR-GRDQHF*R*GRTRR**RSRHYRARGRGGSGATSAIHEILVVLWPARELRGLDWQCRGKDHLRKARMLFLAAYAARPARQADNRHF 583
            GAG+ D  +SE+ A L I P KPV      A   WA +E+ ++V+EALRLDA D + E +    V  G D+     G         +     R     T       V+   A E    D        L KA+M  +AA++AR  RQAD R F
Sbjct:   22 GAGIVDEEISELFAELDIEPGKPVEEEAVSAIRGWATIEDDEEVTEALRLDAADEMAELLAGMQVTTGGDEEDEVEGSD-----DDNSGPERRAPPDYTELSPHFSVLEAAADESGNAD----AAFFLTKAKMAMIAAHSARRVRQADMREF 164
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BLAST of mRNA_H-paniculata_contig175.4141.1 vs. uniprot
Match: A0A6H5KUT5_9PHAE (DDE-1 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUT5_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.270e-6
Identity = 51/152 (33.55%), Postives = 68/152 (44.74%), Query Frame = 2 
Query:  131 GAGVQDTALSEVMANLGIVPTKPVPNAVTVATPAWAGLEEQQDVSEALRLDAQDVLME*VTNTYVR-GRDQHF*R*GRTRR**RSRHYRARGRGGSGATSAIHEILVVLWPARELRGLDWQCRGKDHLRKARMLFLAAYAARPARQADNRHF 583
            GAG+ D  +SE+ A L I P KPV      A   WA +E+ ++V+EALRLDA D + E +    V  G D+     G         +     R     T       V+   A E    D        L KA+M  +AA++AR  RQAD R F
Sbjct:  381 GAGIVDEEISELFAELDIEPGKPVEEEAVSAIRGWATIEDDEEVTEALRLDAADEMAELLAGMQVTTGGDEEDEVEGSD-----DDNSGPERRAPPDYTELSPHFSVLEAAADESGNAD----AAFFLTKAKMAMIAAHSARRVRQADMREF 523
[Close]
BLAST of mRNA_H-paniculata_contig175.4141.1 vs. uniprot
Match: A0A6H5JP23_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP23_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.820e-6
Identity = 51/152 (33.55%), Postives = 68/152 (44.74%), Query Frame = 2 
Query:  131 GAGVQDTALSEVMANLGIVPTKPVPNAVTVATPAWAGLEEQQDVSEALRLDAQDVLME*VTNTYVR-GRDQHF*R*GRTRR**RSRHYRARGRGGSGATSAIHEILVVLWPARELRGLDWQCRGKDHLRKARMLFLAAYAARPARQADNRHF 583
            GAG+ D  +SE+ A L I P KPV      A   WA +E+ ++V+EALRLDA D + E +    V  G D+     G         +     R     T       V+   A E    D        L KA+M  +AA++AR  RQAD R F
Sbjct:  362 GAGIVDEEISELFAELDIEPGKPVEEEAVSAIRGWATIEDDEEVTEALRLDAADEMAELLAGMQVTTGGDEEDEVEGSD-----DDNSGPERRAPPDYTELSPHFSVLEAAADESGNAD----AAFFLTKAKMAMIAAHSARRVRQADMREF 504
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig175.4141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K0I4_9PHAE6.020e-1156.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNH6_9PHAE5.580e-934.87Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEK9_9PHAE1.350e-732.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L286_9PHAE3.030e-733.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUT5_9PHAE2.270e-633.55DDE-1 domain-containing protein n=4 Tax=Ectocarpus... [more]
A0A6H5JP23_9PHAE2.820e-633.55DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig175contigH-paniculata_contig175:10556..11451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size898
Cds size495
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929373.664065-CDS-H-paniculata_contig175:10555..110501622929373.664065-CDS-H-paniculata_contig175:10555..11050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig175 10556..11050 +
1691480835.591459-CDS-H-paniculata_contig175:10555..110501691480835.591459-CDS-H-paniculata_contig175:10555..11050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig175 10556..11050 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929373.6812289-UTR-H-paniculata_contig175:11050..114511622929373.6812289-UTR-H-paniculata_contig175:11050..11451Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig175 11051..11451 +
1691480835.6044052-UTR-H-paniculata_contig175:11050..114511691480835.6044052-UTR-H-paniculata_contig175:11050..11451Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig175 11051..11451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig175.4141.1prot_H-paniculata_contig175.4141.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig175 10556..11050 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig175.4141.1

>prot_H-paniculata_contig175.4141.1 ID=prot_H-paniculata_contig175.4141.1|Name=mRNA_H-paniculata_contig175.4141.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=165bp
QWGSRYKRVPNSGGGRFKRVEIACHNLDPKPHYNGWCTVVLRGRGRCPRH
GVVRGDGEPWHRPDQACPQRRHRGDSGLGRAGGTAGRLRSSATGRAGCAD
GVGDQHVRTWKRPTLLTMRENSTVMKKSTLQGQGERGEWCHLCHTRNSRR
SLARSRITRSRLAM*
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mRNA from alignment at H-paniculata_contig175:10556..11451+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig175.4141.1 ID=mRNA_H-paniculata_contig175.4141.1|Name=mRNA_H-paniculata_contig175.4141.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=896bp|location=Sequence derived from alignment at H-paniculata_contig175:10556..11451+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTGGGGGTCCCGATATAAGAGGGTACCGAATAGTGGGGGGGGGCGATT
TAAGAGGGTCGAAATCGCTTGTCACAACCTCGACCCGAAACCGCACTATA
ACGGATGGTGCACTGTTGTACTAAGGGGCCGGGGCCGGTGTCCAAGACAC
GGCGTTGTCCGAGGTGATGGCGAACCTTGGCATCGTCCCGACCAAGCCTG
TCCCCAACGCCGTCACCGTGGCGACTCCGGCCTGGGCAGGGCTGGAGGAA
CAGCAGGACGTCTCCGAAGCTCTGCGACTGGACGCGCAGGATGTGCTGAT
GGAGTAGGTGACCAACACGTACGTACGTGGAAGAGACCAACACTTCTGAC
GATGAGGGAGAACTCGACGGTAATGAAGAAGTCGACACTACAGGGCCAGG
GGGAGAGGGGGGAGTGGTGCCACCTCTGCCATACACGAAATTCTCGTCGT
TCTTTGGCCCGCTCGAGAATTACGCGGTCTCGACTGGCAATGTAGAGGCA
AGGACCATCTGCGCAAGGCCAGGATGTTATTCCTCGCAGCGTACGCTGCT
CGACCAGCGCGGCAGGCAGATAATAGGCACTTTTCTCACACTTCGGGAGC
GCAAATCATTGCACGGTACAGTACAGCAGAGAGGAGCTCTTCATGCAGCA
CTGTGGTGGTGGTGGATTCGTTTTTGCTCTACAGGCAGTGTTTACTGGCT
GTTTTTTGCAGCCGCTCCAAGCATAGCGTAAGCATTTCAAGAAGTGCATG
ATCATGCATCTGTTGTGGGCCATGAACATGGAACCCGGTTTGAAGTTTCT
GGTACAGTACGTCGTGTAGCTTGTCCTCATGTTACTGTGCGGTAATTCTG
TGCATTTGTGATTTTCAGCAGAGACAAGAAAGAATAAACTGCGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig175:10556..11451+

>mRNA_H-paniculata_contig175.4141.1 ID=mRNA_H-paniculata_contig175.4141.1|Name=mRNA_H-paniculata_contig175.4141.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=990bp|location=Sequence derived from alignment at H-paniculata_contig175:10556..11451+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTGGGGGTCCCGATATAAGAGGGTACCGAATAGTGGGGGGGGGCGATT
TAAGAGGGTCGAAATCGCTTGTCACAACCTCGACCCGAAACCGCACTATA
ACGGATGGTGCACTGTTGTACTAAGGGGCCGGGGCCGGTGTCCAAGACAC
GGCGTTGTCCGAGGTGATGGCGAACCTTGGCATCGTCCCGACCAAGCCTG
TCCCCAACGCCGTCACCGTGGCGACTCCGGCCTGGGCAGGGCTGGAGGAA
CAGCAGGACGTCTCCGAAGCTCTGCGACTGGACGCGCAGGATGTGCTGAT
GGAGTAGGTGACCAACACGTACGTACGTGGAAGAGACCAACACTTCTGAC
GATGAGGGAGAACTCGACGGTAATGAAGAAGTCGACACTACAGGGCCAGG
GGGAGAGGGGGGAGTGGTGCCACCTCTGCCATACACGAAATTCTCGTCGT
TCTTTGGCCCGCTCGAGAATTACGCGGTCTCGACTGGCAATGTAGCAGTG
GGGGTCCCGATATAAGAGGGTACCGAATAGTGGGGGGGGGCGATTTAAGA
GGGTCGAAATCGCTTGTCACAACCTCGACCCGAAACCGCACTATAACGGA
TGGTGCACTGTTGTACTAAGGGGCCGGGGCCGGTGTCCAAGACACGGCGT
TGTCCGAGGTGATGGCGAACCTTGGCATCGTCCCGACCAAGCCTGTCCCC
AACGCCGTCACCGTGGCGACTCCGGCCTGGGCAGGGCTGGAGGAACAGCA
GGACGTCTCCGAAGCTCTGCGACTGGACGCGCAGGATGTGCTGATGGAGT
AGGTGACCAACACGTACGTACGTGGAAGAGACCAACACTTCTGACGATGA
GGGAGAACTCGACGGTAATGAAGAAGTCGACACTACAGGGCCAGGGGGAG
AGGGGGGAGTGGTGCCACCTCTGCCATACACGAAATTCTCGTCGTTCTTT
GGCCCGCTCGAGAATTACGCGGTCTCGACTGGCAATGTAG
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