prot_H-paniculata_contig17499.4140.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig17499.4140.1
Unique Nameprot_H-paniculata_contig17499.4140.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length58
Homology
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BLAST of mRNA_H-paniculata_contig17499.4140.1 vs. uniprot
Match: D7FU35_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU35_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 7.810e-6
Identity = 21/54 (38.89%), Postives = 33/54 (61.11%), Query Frame = 0 
Query:    2 ETLEQLVRDLSLKGHKRSSPTHPFLCFKTTMQLVDKARKGEDWSWVRNKNVGAF 55
            ETL+++++   + G +  SP   F  F   M LVD+  +GE+W+WVR KN+  F
Sbjct: 1196 ETLKEVIKSFEVDGMRGRSP---FPSFDAKMHLVDRGGRGEEWAWVRTKNIDQF 1246
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17499.4140.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FU35_ECTSI7.810e-638.89LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17499contigH-paniculata_contig17499:2261..2434 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17499.4140.1mRNA_H-paniculata_contig17499.4140.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig17499 2176..2777 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig17499.4140.1 ID=prot_H-paniculata_contig17499.4140.1|Name=mRNA_H-paniculata_contig17499.4140.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
METLEQLVRDLSLKGHKRSSPTHPFLCFKTTMQLVDKARKGEDWSWVRNK
NVGAFTA*
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