mRNA_H-paniculata_contig17495.4139.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17495.4139.1
Unique NamemRNA_H-paniculata_contig17495.4139.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17495.4139.1 vs. uniprot
Match: D7G1B4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1B4_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 1.800e-48
Identity = 76/95 (80.00%), Postives = 83/95 (87.37%), Query Frame = 1 
Query:    1 VMMEWERPYMRALVDALGITEESNVLEIGFGCGYSADRFQELSPRSHTIVEPDRVVLERLRGWAETRKGVRVVEGFWQTALPSLGTYDAIFFDDF 285
            VMMEWE+PYMRALVDAL ITEES VLEIG+G GYSADR QE SPRSHTI+EPD VVL RLRGWA  R GVR+VEGFWQTAL +LG +DA+FFDDF
Sbjct:   85 VMMEWEKPYMRALVDALAITEESRVLEIGYGIGYSADRIQEFSPRSHTIIEPDPVVLARLRGWAAARPGVRIVEGFWQTALATLGEFDAVFFDDF 179
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BLAST of mRNA_H-paniculata_contig17495.4139.1 vs. uniprot
Match: A0A6H5KGP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGP7_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 5.070e-48
Identity = 76/95 (80.00%), Postives = 83/95 (87.37%), Query Frame = 1 
Query:    1 VMMEWERPYMRALVDALGITEESNVLEIGFGCGYSADRFQELSPRSHTIVEPDRVVLERLRGWAETRKGVRVVEGFWQTALPSLGTYDAIFFDDF 285
            VMMEWE+PYMRALVDAL ITEES VLEIG+G GYSADR QE SPRSHTI+EPD VVL RLRGWA  R GVR+VEGFWQTAL +LG +DA+FFDDF
Sbjct:   10 VMMEWEKPYMRALVDALAITEESRVLEIGYGIGYSADRIQEFSPRSHTIIEPDPVVLARLRGWAAARPGVRIVEGFWQTALATLGEFDAVFFDDF 104
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BLAST of mRNA_H-paniculata_contig17495.4139.1 vs. uniprot
Match: A0A7S0NTQ9_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NTQ9_9EUKA)

HSP 1 Score: 130 bits (328), Expect = 2.250e-35
Identity = 63/95 (66.32%), Postives = 69/95 (72.63%), Query Frame = 1 
Query:    1 VMMEWERPYMRALVDALGITEESNVLEIGFGCGYSADRFQELSPRSHTIVEPDRVVLERLRGWAETRKGVRVVEGFWQTALPSLGTYDAIFFDDF 285
            VMMEWERPYM   +D L IT + +VLE+GFGC YSADR Q  SPRSHTIVE    VLERLR WA  +  VRVVEG WQ  LP LG +D IFFDDF
Sbjct:   11 VMMEWERPYMARCIDTLRITTDCDVLEVGFGCAYSADRVQRASPRSHTIVECAAPVLERLREWARDKPSVRVVEGTWQARLPELGDFDRIFFDDF 105
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BLAST of mRNA_H-paniculata_contig17495.4139.1 vs. uniprot
Match: A0A7S0LEN1_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LEN1_9EUKA)

HSP 1 Score: 127 bits (320), Expect = 2.810e-34
Identity = 60/95 (63.16%), Postives = 69/95 (72.63%), Query Frame = 1 
Query:    1 VMMEWERPYMRALVDALGITEESNVLEIGFGCGYSADRFQELSPRSHTIVEPDRVVLERLRGWAETRKGVRVVEGFWQTALPSLGTYDAIFFDDF 285
            VMMEWERPYM   +D L I+ + +VLE+GFGCGYSADR Q  +PRSHTIVE    VL RLR WA  +  VRVV+G WQ  LP LG +D IFFDDF
Sbjct:   72 VMMEWERPYMVRCIDTLRISSDCDVLEVGFGCGYSADRVQRSNPRSHTIVECSEPVLSRLREWASDKPSVRVVDGTWQARLPDLGEFDRIFFDDF 166
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BLAST of mRNA_H-paniculata_contig17495.4139.1 vs. uniprot
Match: A0A812Q0V8_9DINO (Gamt-a protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812Q0V8_9DINO)

HSP 1 Score: 129 bits (323), Expect = 5.730e-33
Identity = 57/95 (60.00%), Postives = 69/95 (72.63%), Query Frame = 1 
Query:    1 VMMEWERPYMRALVDALGITEESNVLEIGFGCGYSADRFQELSPRSHTIVEPDRVVLERLRGWAETRKGVRVVEGFWQTALPSLGTYDAIFFDDF 285
            VMMEWE+PYM    D LG+  +++VLE+GFGCGYSA R QE  PRSHTI+E   VVLERL+ WA  +  V +VEG WQ  LP LG +D IFFDD+
Sbjct:  346 VMMEWEKPYMEKCADELGVNSDTDVLEVGFGCGYSASRIQEYKPRSHTIIECSEVVLERLKHWAADKPNVHIVEGTWQKRLPELGQFDRIFFDDY 440
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BLAST of mRNA_H-paniculata_contig17495.4139.1 vs. uniprot
Match: A0A812X2Q9_9DINO (Gamt protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812X2Q9_9DINO)

HSP 1 Score: 129 bits (325), Expect = 6.510e-33
Identity = 58/95 (61.05%), Postives = 70/95 (73.68%), Query Frame = 1 
Query:    1 VMMEWERPYMRALVDALGITEESNVLEIGFGCGYSADRFQELSPRSHTIVEPDRVVLERLRGWAETRKGVRVVEGFWQTALPSLGTYDAIFFDDF 285
            VMMEWE+PYM   VD L +T +++VLE+GFGCGYSA R QE  PRSHTI+E   VVLERL+ WA  +  V +VEG WQ  LP LG +D IFFDD+
Sbjct:  167 VMMEWEKPYMEKCVDELKVTSDTDVLEVGFGCGYSASRIQEFKPRSHTIIECSEVVLERLKHWAADKPNVHIVEGTWQQRLPELGRFDRIFFDDY 261
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BLAST of mRNA_H-paniculata_contig17495.4139.1 vs. uniprot
Match: A0A1Q9E4R3_SYMMI (Guanidinoacetate N-methyltransferase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9E4R3_SYMMI)

HSP 1 Score: 129 bits (325), Expect = 6.690e-33
Identity = 58/95 (61.05%), Postives = 70/95 (73.68%), Query Frame = 1 
Query:    1 VMMEWERPYMRALVDALGITEESNVLEIGFGCGYSADRFQELSPRSHTIVEPDRVVLERLRGWAETRKGVRVVEGFWQTALPSLGTYDAIFFDDF 285
            VMMEWE+PYM   VD L +T +++VLE+GFGCGYSA R QE  PRSHTI+E   VVLERL+ WA  +  V +VEG WQ  LP LG +D IFFDD+
Sbjct: 2293 VMMEWEKPYMEKCVDELKVTSDTDVLEVGFGCGYSASRIQEFKPRSHTIIECSEVVLERLKHWAADKPNVHIVEGTWQQRLPELGRFDRIFFDDY 2387
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BLAST of mRNA_H-paniculata_contig17495.4139.1 vs. uniprot
Match: A0A812J552_9DINO (Gamt protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812J552_9DINO)

HSP 1 Score: 129 bits (324), Expect = 9.100e-33
Identity = 58/95 (61.05%), Postives = 70/95 (73.68%), Query Frame = 1 
Query:    1 VMMEWERPYMRALVDALGITEESNVLEIGFGCGYSADRFQELSPRSHTIVEPDRVVLERLRGWAETRKGVRVVEGFWQTALPSLGTYDAIFFDDF 285
            VMMEWE+PYM   VD L +T +++VLE+GFGCGYSA R QE  PRSHTI+E   VVLERL+ WA  +  V +VEG WQ  LP LG +D IFFDD+
Sbjct: 2300 VMMEWEKPYMEKCVDELKVTADTDVLEVGFGCGYSASRIQEFKPRSHTIIECSEVVLERLKHWAADKPNVHIVEGTWQQRLPELGRFDRIFFDDY 2394
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BLAST of mRNA_H-paniculata_contig17495.4139.1 vs. uniprot
Match: A0A485KL38_9STRA (Aste57867_8776 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KL38_9STRA)

HSP 1 Score: 119 bits (298), Expect = 6.100e-31
Identity = 57/95 (60.00%), Postives = 66/95 (69.47%), Query Frame = 1 
Query:    1 VMMEWERPYMRALVDALGITEESNVLEIGFGCGYSADRFQELSPRSHTIVEPDRVVLERLRGWAETRKGVRVVEGFWQTALPSLGTYDAIFFDDF 285
            VMMEWER YM   VD L IT   +VLEIGFG GYSA R Q  +PRSHTI+E D V L++L  WA  RK V +V G WQ+ L SLG +D IFFDD+
Sbjct:   25 VMMEWEREYMERCVDVLAITTTCDVLEIGFGLGYSASRIQSFAPRSHTIIECDPVCLKQLEAWAADRKNVTIVAGTWQSMLASLGAFDCIFFDDY 119
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BLAST of mRNA_H-paniculata_contig17495.4139.1 vs. uniprot
Match: A0A7S2VSJ9_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2VSJ9_9DINO)

HSP 1 Score: 119 bits (299), Expect = 4.200e-30
Identity = 56/94 (59.57%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:    1 VMMEWERPYMRALVDALGITEESNVLEIGFGCGYSADRFQELSPRSHTIVEPDRVVLERLRGWAETRKGVRVVEGFWQTALPSLGTYDAIFFDD 282
            VMMEWER YM   VD LGI E  +VLE+GFGC YSA+R Q   PR+HTI+E     L+RLR WA  +  VRVVEG WQ  LP LG +D +FFDD
Sbjct:  192 VMMEWERTYMEECVDELGIDETCDVLEVGFGCAYSANRIQGYRPRTHTIIECADAPLQRLRSWAADKPSVRVVEGTWQARLPELGIFDCVFFDD 285
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17495.4139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1B4_ECTSI1.800e-4880.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGP7_9PHAE5.070e-4880.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0NTQ9_9EUKA2.250e-3566.32Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S0LEN1_9EUKA2.810e-3463.16Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A812Q0V8_9DINO5.730e-3360.00Gamt-a protein n=1 Tax=Symbiodinium natans TaxID=8... [more]
A0A812X2Q9_9DINO6.510e-3361.05Gamt protein n=1 Tax=Symbiodinium sp. CCMP2456 Tax... [more]
A0A1Q9E4R3_SYMMI6.690e-3361.05Guanidinoacetate N-methyltransferase n=1 Tax=Symbi... [more]
A0A812J552_9DINO9.100e-3361.05Gamt protein n=1 Tax=Symbiodinium necroappetens Ta... [more]
A0A485KL38_9STRA6.100e-3160.00Aste57867_8776 protein n=1 Tax=Aphanomyces stellat... [more]
A0A7S2VSJ9_9DINO4.200e-3059.57Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17495contigH-paniculata_contig17495:922..2047 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.4
Seed ortholog evalue2.1e-37
Seed eggNOG ortholog2880.D7G1B4
KEGG rclassRC00003,RC00614
KEGG koko:K00542
KEGG ReactionR01883
KEGG Pathwayko00260,ko00330,ko01100,map00260,map00330,map01100
KEGG ModuleM00047
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein-arginine N5-methyltransferase activity
EggNOG OGsKOG1709@1,KOG1709@2759
EC2.1.1.2
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size285
Cds size282
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17495.4139.1prot_H-paniculata_contig17495.4139.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17495 922..2044 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929373.506094-CDS-H-paniculata_contig17495:921..11451622929373.506094-CDS-H-paniculata_contig17495:921..1145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17495 922..1145 -
1691480835.5169337-CDS-H-paniculata_contig17495:921..11451691480835.5169337-CDS-H-paniculata_contig17495:921..1145Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17495 922..1145 -
1622929373.5215876-CDS-H-paniculata_contig17495:1986..20441622929373.5215876-CDS-H-paniculata_contig17495:1986..2044Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17495 1987..2044 -
1691480835.5279562-CDS-H-paniculata_contig17495:1986..20441691480835.5279562-CDS-H-paniculata_contig17495:1986..2044Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17495 1987..2044 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929373.5413682-UTR-H-paniculata_contig17495:2044..20471622929373.5413682-UTR-H-paniculata_contig17495:2044..2047Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17495 2045..2047 -
1691480835.5364444-UTR-H-paniculata_contig17495:2044..20471691480835.5364444-UTR-H-paniculata_contig17495:2044..2047Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17495 2045..2047 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17495.4139.1

>prot_H-paniculata_contig17495.4139.1 ID=prot_H-paniculata_contig17495.4139.1|Name=mRNA_H-paniculata_contig17495.4139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=94bp
MMEWERPYMRALVDALGITEESNVLEIGFGCGYSADRFQELSPRSHTIVE
PDRVVLERLRGWAETRKGVRVVEGFWQTALPSLGTYDAIFFDDF
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mRNA from alignment at H-paniculata_contig17495:922..2047-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17495.4139.1 ID=mRNA_H-paniculata_contig17495.4139.1|Name=mRNA_H-paniculata_contig17495.4139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1126bp|location=Sequence derived from alignment at H-paniculata_contig17495:922..2047- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCATGATGGAGTGGGAGCGGCCGTACATGCGAGCGTTGGTGGACGCCTT
GGGGATTACAGGTGTGTGGGCGGGAATTGTGCAGTGTATGTGTATGCGTG
CGAGGGAGAGAGACAGACAGAGACAGACAGAGACAGACAGAGATAGACAG
AGACAGAGATAGACAGAGACAGAGATAGACAGAGACAGAGATAGACAGAG
ACAGAGACAGAGACAAGGCTCAACGGACGGAGCGAAACAGAGACATAAAT
CAATGAGGACGTGCGTGGTCTACTTACTAGTATACGCTTGTCGCGCTCTC
TTTTATTCATGTACAGAAGAACTCAGAGCACAGTATATGGTTTCCTGCGG
TTCCATGCGGTACCCATCATCTACCCCGTGATACAAACGTTACAGAGATT
TTCCTGAGCGTATATAGGCTCCTTCAAATCGCGAATCAAACATTTTCCAC
TTTACCTGAGTCATGTTGGAAGGTCGCACATTTCCCGTGCAGAGTCGTGG
GGTGAAGGAGTGGTCATTTCAATCCTTTGGCATACCCTCCACACACCTAG
AGTTTTCTGCCAGTGCTGATGAGTATACTAGTGTGCTGCTTCGAGATACA
AGGTGCACAAGCTCAGCGTGTACCATCCCCTCAGATGATTATAAGCTGAT
GAAAACATGCATTGCCCAAATTTGTGGGCTAGGTAATTAACCTCGGCATG
ATACGATGCTTTTGTTGTGAAATTACTCTAGATCGTGATACACCATGATA
AAGCTTATATCGGTTGGTGAGAGTTCGCAAGTTTTTGTGTGTGTCCGTGT
CAATTTTCACTGTTTTTACTAGGTCATGTTATGTCTTCTGCATATCACAC
GTAAATGATACTTCTCCCCCTTCCCCCCTGCCCCGCACCACACTGAACCA
AGAGGAAAGCAACGTCCTTGAGATAGGATTCGGATGCGGCTACTCAGCAG
ACCGTTTTCAAGAGTTGTCGCCGAGATCACACACCATAGTGGAGCCTGAC
CGCGTAGTGCTAGAGCGTCTCCGCGGGTGGGCGGAAACACGAAAAGGGGT
TCGAGTCGTGGAAGGCTTTTGGCAGACGGCTCTGCCGTCGCTGGGGACGT
ACGACGCTATATTTTTCGACGATTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig17495:922..2047-

>mRNA_H-paniculata_contig17495.4139.1 ID=mRNA_H-paniculata_contig17495.4139.1|Name=mRNA_H-paniculata_contig17495.4139.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at H-paniculata_contig17495:922..2047- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGAGTGGGAGCGGCCGTACATGCGAGCGTTGGTGGACGCCTTGGG
GATTACAGATGATGGAGTGGGAGCGGCCGTACATGCGAGCGTTGGTGGAC
GCCTTGGGGATTACAGAGGAAAGCAACGTCCTTGAGATAGGATTCGGATG
CGGCTACTCAGCAGACCGTTTTCAAGAGTTGTCGCCGAGATCACACACCA
TAGTGGAGCCTGACCGCGTAGTGCTAGAGCGTCTCCGCGGGTGGGCGGAA
ACACGAAAAGGGGTTCGAGTCGTGGAAGGCTTTTGGCAGACGGCTCTGCC
GTCGCTGGGGACGTACGACGCTATATTTTTCGACGATTTTAGGAAAGCAA
CGTCCTTGAGATAGGATTCGGATGCGGCTACTCAGCAGACCGTTTTCAAG
AGTTGTCGCCGAGATCACACACCATAGTGGAGCCTGACCGCGTAGTGCTA
GAGCGTCTCCGCGGGTGGGCGGAAACACGAAAAGGGGTTCGAGTCGTGGA
AGGCTTTTGGCAGACGGCTCTGCCGTCGCTGGGGACGTACGACGCTATAT
TTTTCGACGATTTT
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