mRNA_H-paniculata_contig17490.4138.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17490.4138.1
Unique NamemRNA_H-paniculata_contig17490.4138.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17490.4138.1 vs. uniprot
Match: D8LEI3_ECTSI (CAF1C_H4-bd domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEI3_ECTSI)

HSP 1 Score: 352 bits (902), Expect = 3.240e-120
Identity = 166/214 (77.57%), Postives = 174/214 (81.31%), Query Frame = 1 
Query:    1 MPQNEFVIATKSPSADVCVFDISKHPSVPPANSGCKPEHRCKGHTKEGYGLSWNPHVEGRLLSGSDDSLVCYWDLREGGQTVDATQKFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSTNGSKPTTVVPEPMHLLERHTSEVGDGEVLGVQWAPFDETILGSCSADRRVKVWSLSRIGEEQAPEDAEDGPPELLFIHGGHTSRVGDFRC 642
            MPQNEFVIATKSPSADVCVFDISKHPSVPP+NSGC+PEHRCKGHTKEGYGLSWNPHVEGRLLSGSDD LVCYWD++  GQTVDATQKFE                                TS +GSKPTTV+ +PMHLLERH SE GDGEVLGVQWA FDETILGSCSADRRVKVWSLSRIGEEQ+PEDAEDGPPELLFIHGGHTSRVGDFRC
Sbjct:   42 MPQNEFVIATKSPSADVCVFDISKHPSVPPSNSGCRPEHRCKGHTKEGYGLSWNPHVEGRLLSGSDDGLVCYWDIKGAGQTVDATQKFEGHTSVVGDVAWHQQNPKLLGSVGDDRQLLFWDTSMDGSKPTTVIKDPMHLLERHGSEAGDGEVLGVQWASFDETILGSCSADRRVKVWSLSRIGEEQSPEDAEDGPPELLFIHGGHTSRVGDFRC 255
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BLAST of mRNA_H-paniculata_contig17490.4138.1 vs. uniprot
Match: A0A6H5JAT4_9PHAE (CAF1C_H4-bd domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAT4_9PHAE)

HSP 1 Score: 328 bits (841), Expect = 4.630e-108
Identity = 164/250 (65.60%), Postives = 173/250 (69.20%), Query Frame = 1 
Query:    1 MPQNEFVIATKSPSADVCVFDISKHPSVPPANSGCKPEHRCKGHTKEGYGLSWNPHVEGRLLSGSDDSLVCYWDLREGGQTVDATQKFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSTNGSKPTTVVPE--------------------------------------PMHLLERHTSEVGDGEVLGVQWAPFDETILGSCSADRRVKVWSLSRIGEEQAPEDAEDGPPELLFIHGGHTSRVGDF 636
            MPQNEFVIATKSPSADVCVFDISKHPSVPP+NSGC+PEHRCKGHTKEGYGLSWNPHVEGRLLSGSDD LVCYWD++  GQTVDATQKFE                                TS +GSKPTTV+ +                                      PMHLLERH+SE GDGEVLGVQWA FDETILGSCSADRRVKVWSLSRIGEEQ+PEDAEDGPPELLFIHGGHTSRVGDF
Sbjct:  204 MPQNEFVIATKSPSADVCVFDISKHPSVPPSNSGCRPEHRCKGHTKEGYGLSWNPHVEGRLLSGSDDGLVCYWDIKGAGQTVDATQKFEGHTSVVGDVAWHQQNPKLLGSVGDDRQLLFWDTSMDGSKPTTVIKDAHSANINCLAFNPFSEFLLATGSSDTTVALWDMRNMGKPMHLLERHSSEAGDGEVLGVQWASFDETILGSCSADRRVKVWSLSRIGEEQSPEDAEDGPPELLFIHGGHTSRVGDF 453
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BLAST of mRNA_H-paniculata_contig17490.4138.1 vs. uniprot
Match: A0A3L7I9Y9_CRIGR (RBBP4 n=2 Tax=Boreoeutheria TaxID=1437010 RepID=A0A3L7I9Y9_CRIGR)

HSP 1 Score: 195 bits (496), Expect = 2.220e-57
Identity = 105/227 (46.26%), Postives = 131/227 (57.71%), Query Frame = 1 
Query:    1 MPQNEFVIATKSPSADVCVFDISKHPSVPPANSGCKPEHRCKGHTKEGYGLSWNPHVEGRLLSGSDDSLVCYWDLR---EGGQTVDATQKFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT-STNGSKPTTVVP----EPMHL-------LERHTSEVGDGEVLGVQWAPFDETILGSCSADRRVKVWSLSRIGEEQAPEDAEDGPPELLFIHGGHTSRVGDF 636
            MPQN  +IATK+PS+DV VFD +KHPS P  +  C P+ R +GH KEGYGLSWNP++ G LLS SDD  +C WD+    + G+ VDA   F                                 T S N SKP+  V     E + L       L+ H+ E    E+  VQW+P +ETIL S   DRR+ VW LS+IGEEQ+PEDAEDGPPELLFIHGGHT+++ DF
Sbjct:  133 MPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAETVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDF 359
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BLAST of mRNA_H-paniculata_contig17490.4138.1 vs. uniprot
Match: S9XGN8_CAMFR (Histone-binding protein RBBP4 n=1 Tax=Camelus ferus TaxID=419612 RepID=S9XGN8_CAMFR)

HSP 1 Score: 196 bits (498), Expect = 1.190e-55
Identity = 100/217 (46.08%), Postives = 125/217 (57.60%), Query Frame = 1 
Query:    1 MPQNEFVIATKSPSADVCVFDISKHPSVPPANSGCKPEHRCKGHTKEGYGLSWNPHVEGRLLSGSDDSLVCYWDLR---EGGQTVDATQKFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSTNGSKPTTVVPEPMH--LLERHTSEVGDGEVLGVQWAPFDETILGSCSADRRVKVWSLSRIGEEQAPEDAEDGPPELLFIHGGHTSRVGDF 636
            MPQN  +IATK+PS+DV VFD +KHPS P  +  C P+ R +GH KEGYGLSWNP++ G LLS SDD  +C WD+    + G+ VDA   F                                     GS   TV    +    L+ H+ E    E+  VQW+P +ETIL S   DRR+ VW LS+IGEEQ+PEDAEDGPPELLFIHGGHT+++ DF
Sbjct:  378 MPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDF 594
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BLAST of mRNA_H-paniculata_contig17490.4138.1 vs. uniprot
Match: UPI0005D37A4D (WD-40 repeat-containing protein MSI1 n=1 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0005D37A4D)

HSP 1 Score: 189 bits (479), Expect = 3.280e-55
Identity = 100/214 (46.73%), Postives = 118/214 (55.14%), Query Frame = 1 
Query:    1 MPQNEFVIATKSPSADVCVFDISKHPSVPPANSGCKPEHRCKGHTKEGYGLSWNPHVEGRLLSGSDDSLVCYWDLREGGQTVDATQKFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSTNGSKPTTVVPEPMHLLERHTSEVG--DGEVLGVQWAPFDETILGSCSADRRVKVWSLSRIGEEQAPEDAEDGPPELLFIHGGHTSRVGDF 636
            MPQN  +IATK+  +DV VFD  KHPS  P    C P+ R +GHT EGYGLSWNPH EG LLSGSDDSL+C WD+     T+   Q  E                                        +++  +P+  +  H +EV    GEV  V W P  ETIL S  ADRRV VW L RIGEEQA EDAEDGPPELLF+HGGHT ++ DF
Sbjct:  120 MPQNSRIIATKTIHSDVFVFDYGKHPSRTPPGGSCSPDLRLRGHTMEGYGLSWNPHKEGYLLSGSDDSLICLWDI----STMPQQQVLEAKEVYDVHEGVVGDLSWHLKHEYLFGSVGEDCRLNIWDLRSSLPKKPLQSILAHQAEVRICRGEVYEVAWNPKSETILASSGADRRVMVWDLDRIGEEQAAEDAEDGPPELLFVHGGHTDKISDF 329
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BLAST of mRNA_H-paniculata_contig17490.4138.1 vs. uniprot
Match: G5B5J6_HETGA (Histone-binding protein RBBP4 n=1 Tax=Heterocephalus glaber TaxID=10181 RepID=G5B5J6_HETGA)

HSP 1 Score: 187 bits (475), Expect = 3.460e-54
Identity = 100/239 (41.84%), Postives = 128/239 (53.56%), Query Frame = 1 
Query:    1 MPQNEFVIATKSP-----------SADVCVFDISKHPSVPPANSGCKPEHRCKGHTKEGYGLSWNPHVEGRLLSGSDDSLVCYWDLR---EGGQTVDATQKFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSTNGSKPTTVVPEPMHLLERHTSEV-------------GDGEVLGVQWAPFDETILGSCSADRRVKVWSLSRIGEEQAPEDAEDGPPELLFIHGGHTSRVGDF 636
            MPQN  +IATK+P           S+DV VFD +KHPS P  +  C P+ R +GH KEGYGLSWNP++ G LLS SDD  +C WD+    + G+ VDA   F                                 T +N +       +P H ++ HT++V               G    VQW+P +ETIL S   DRR+ VW LS+IGEEQ+PEDAEDGPPELLFIHGGHT+++ DF
Sbjct:  133 MPQNPCIIATKTPPQNRXXXXXXXSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTS------KPSHSVDAHTADVTCLSFNPYSEFILATGSADKVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDF 365
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BLAST of mRNA_H-paniculata_contig17490.4138.1 vs. uniprot
Match: A0A556U5T8_BAGYA (Histone-binding protein RBBP7 n=1 Tax=Bagarius yarrelli TaxID=175774 RepID=A0A556U5T8_BAGYA)

HSP 1 Score: 185 bits (470), Expect = 4.960e-54
Identity = 96/217 (44.24%), Postives = 125/217 (57.60%), Query Frame = 1 
Query:    1 MPQNEFVIATKSPSADVCVFDISKHPSVPPANSGCKPEHRCKGHTKEGYGLSWNPHVEGRLLSGSDDSLVCYWDLR---EGGQTVDATQKFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSTNGSKPTTVVPEPMH--LLERHTSEVGDGEVLGVQWAPFDETILGSCSADRRVKVWSLSRIGEEQAPEDAEDGPPELLFIHGGHTSRVGDF 636
            MPQN  +IATK+P++DV VFD +KHPS P  +  C P+ R +GH KEGYGLSWNP++ G LLS SDD  +C WD+    + G+ +DA   F                                  + +   P TV    +    L+ H+ E    E+  VQW+P +ETIL S   DRR+ VW LS+IGEEQ+ EDAEDGPPELLFIHGGHT+++ DF
Sbjct:   95 MPQNPCIIATKTPTSDVLVFDYTKHPSKPDPSGECSPDLRLRGHQKEGYGLSWNPNLSGNLLSASDDHTICLWDISGSPKEGKIIDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIELWTIDF--PLTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDF 309
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BLAST of mRNA_H-paniculata_contig17490.4138.1 vs. uniprot
Match: A0A1I8F5C9_9PLAT (Uncharacterized protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8F5C9_9PLAT)

HSP 1 Score: 192 bits (488), Expect = 5.320e-54
Identity = 101/230 (43.91%), Postives = 128/230 (55.65%), Query Frame = 1 
Query:    1 MPQNEFVIATKSPSADVCVFDISKHPSVPPANSGCKPEHRCKGHTKEGYGLSWNPHVEGRLLSGSDDSLVCYWDLREGGQTV--DAT---------------QKFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSTNGSKPTTVVPEPMHL-LERHTSEVGDGEVLGVQWAPFDETILGSCSADRRVKVWSLSRIGEEQAPEDAEDGPPELLFIHGGHTSRVGDF 636
            MPQN  +IATK+PS+DV +FD +KHPS P  +  C+PE R KGH KEGYGLSWNP++E  LLS SDD  +C WD   G  +V  D +               QK                                   +T  +  T  + +  +L L+ H+ E    E+  VQW+P +ETIL S   DRR+ VW LS+IGEEQAPEDAEDGPPELLFIHGGHT+++ DF
Sbjct:   83 MPQNPTIIATKTPSSDVLIFDYTKHPSKPDPSGECRPEIRLKGHQKEGYGLSWNPNIEAHLLSASDDHTICLWDCSRGHSSVVEDVSWHLLHDRIFGSVGDDQKLMIWDTRAKSSSKPTHSVEAHTAEVNCLSFNPFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQAPEDAEDGPPELLFIHGGHTAKISDF 312
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BLAST of mRNA_H-paniculata_contig17490.4138.1 vs. uniprot
Match: A0A5N5TJX5_9CRUS (Putative histone-binding protein Caf1 n=2 Tax=Armadillidium TaxID=13346 RepID=A0A5N5TJX5_9CRUS)

HSP 1 Score: 184 bits (467), Expect = 2.950e-53
Identity = 96/228 (42.11%), Postives = 123/228 (53.95%), Query Frame = 1 
Query:    1 MPQNEFVIATKSPSADVCVFDISKHPSVPPANSGCKPEHRCKGHTKEGYGLSWNPHVEGRLLSGSDDSLVCYWDLR---EGGQTVDATQKFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSTNGSKPTTVVPEPMHLLERHTSEVG-------------DGEVLGVQWAPFDETILGSCSADRRVKVWSLSRIGEEQAPEDAEDGPPELLFIHGGHTSRVGDF 636
            MPQN  VIATK+PS+DV VFD +KHPS P  +  C P+ R +GH KEGYGLSWNP++ G LLS SDD  +C WD+    +  + +DA   F                                 T +N +       +P H ++ HT+EV               G    VQW+P +   L S   DRR+ VW LS+IGEEQ+ EDAEDGPPELLFIHGGHT+++ DF
Sbjct:  136 MPQNPCVIATKTPSSDVLVFDYTKHPSKPEPSGECHPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNNTN------KPSHTVDAHTAEVNCLSFNPYSEFILATGSADKVQWSPHNXXXLASSGTDRRLHVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDF 357
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BLAST of mRNA_H-paniculata_contig17490.4138.1 vs. uniprot
Match: A0A5F4VRT4_CALJA (RB binding protein 4, chromatin remodeling factor n=5 Tax=Gnathostomata TaxID=7776 RepID=A0A5F4VRT4_CALJA)

HSP 1 Score: 182 bits (461), Expect = 2.740e-52
Identity = 97/226 (42.92%), Postives = 126/226 (55.75%), Query Frame = 1 
Query:    1 MPQNEFVIATKSPSADVCVFDISKHPSVPPANSGCKPEHRCKGHTKEGYGLSWNPHVEGRLLSGSDDSLVCYWDLR---EGGQTVDATQKFEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSTNGSKPTTVVPEPMHLLERHTSEVGDGEVLGVQWAPFDETILGSCSAD-----------RRVKVWSLSRIGEEQAPEDAEDGPPELLFIHGGHTSRVGDF 636
            MPQN  +IATK+PS+DV VFD +KHPS P  +  C P+ R +GH KEGYGLSWNP++ G LLS SDD  +C WD+    + G+ VDA   F                                 T +N +       +P H ++ HT+EV       + + P+ E IL + SAD           RR+ VW LS+IGEEQ+PEDAEDGPPELLFIHGGHT+++ DF
Sbjct:  133 MPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTS------KPSHSVDAHTAEVNC-----LSFNPYSEFILATGSADKVKIFYLNGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDF 347
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17490.4138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEI3_ECTSI3.240e-12077.57CAF1C_H4-bd domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JAT4_9PHAE4.630e-10865.60CAF1C_H4-bd domain-containing protein n=1 Tax=Ecto... [more]
A0A3L7I9Y9_CRIGR2.220e-5746.26RBBP4 n=2 Tax=Boreoeutheria TaxID=1437010 RepID=A0... [more]
S9XGN8_CAMFR1.190e-5546.08Histone-binding protein RBBP4 n=1 Tax=Camelus feru... [more]
UPI0005D37A4D3.280e-5546.73WD-40 repeat-containing protein MSI1 n=1 Tax=Ambor... [more]
G5B5J6_HETGA3.460e-5441.84Histone-binding protein RBBP4 n=1 Tax=Heterocephal... [more]
A0A556U5T8_BAGYA4.960e-5444.24Histone-binding protein RBBP7 n=1 Tax=Bagarius yar... [more]
A0A1I8F5C9_9PLAT5.320e-5443.91Uncharacterized protein n=1 Tax=Macrostomum lignan... [more]
A0A5N5TJX5_9CRUS2.950e-5342.11Putative histone-binding protein Caf1 n=2 Tax=Arma... [more]
A0A5F4VRT4_CALJA2.740e-5242.92RB binding protein 4, chromatin remodeling factor ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17490contigH-paniculata_contig17490:411..3309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score351.7
Seed ortholog evalue2.5e-94
Seed eggNOG ortholog2880.D8LEI3
Preferred nameRBBP4
KEGG koko:K10752,ko:K11659
KEGG Pathwayko04218,map04218
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000118,GO:0000122,GO:0000228,GO:0000278,GO:0000280,GO:0000281,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000819,GO:0000910,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0001012,GO:0001067,GO:0001558,GO:0001708,GO:0002064,GO:0002065,GO:0002066,GO:0002244,GO:0002376,GO:0002520,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003824,GO:0004407,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005694,GO:0005700,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006277,GO:0006281,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006335,GO:0006336,GO:0006338,GO:0006342,GO:0006351,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006476,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007076,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007304,GO:0007306,GO:0007307,GO:0007346,GO:0007379,GO:0007389,GO:0007548,GO:0008150,GO:0008152,GO:0008213,GO:0008283,GO:0008284,GO:0008285,GO:0008406,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009611,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010286,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010927,GO:0010948,GO:0014070,GO:0016043,GO:0016070,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016573,GO:0016575,GO:0016580,GO:0016581,GO:0016584,GO:0016589,GO:0016787,GO:0016810,GO:0016811,GO:0017053,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019213,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030097,GO:0030154,GO:0030261,GO:0030308,GO:0030703,GO:0030707,GO:0030855,GO:0031010,GO:0031055,GO:0031099,GO:0031101,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031497,GO:0031519,GO:0031523,GO:0031974,GO:0031981,GO:0032221,GO:0032259,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032989,GO:0032991,GO:0033186,GO:0033554,GO:0033558,GO:0033698,GO:0033993,GO:0034080,GO:0034508,GO:0034605,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034708,GO:0034723,GO:0034724,GO:0034728,GO:0035035,GO:0035097,GO:0035098,GO:0035239,GO:0035282,GO:0035295,GO:0035601,GO:0036211,GO:0040007,GO:0040008,GO:0040029,GO:0040035,GO:0042060,GO:0042127,GO:0042221,GO:0042246,GO:0042393,GO:0042766,GO:0042802,GO:0042803,GO:0042826,GO:0043044,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043486,GO:0043543,GO:0043565,GO:0043687,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0045137,GO:0045138,GO:0045165,GO:0045786,GO:0045814,GO:0045892,GO:0045926,GO:0045934,GO:0046483,GO:0046661,GO:0046689,GO:0046983,GO:0048285,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048545,GO:0048546,GO:0048557,GO:0048562,GO:0048565,GO:0048566,GO:0048568,GO:0048589,GO:0048598,GO:0048608,GO:0048609,GO:0048646,GO:0048731,GO:0048806,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051382,GO:0051383,GO:0051704,GO:0051716,GO:0051726,GO:0055123,GO:0060255,GO:0060429,GO:0061458,GO:0061640,GO:0061641,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070176,GO:0070210,GO:0070316,GO:0070317,GO:0070370,GO:0070603,GO:0070822,GO:0070925,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090545,GO:0090568,GO:0090571,GO:0090598,GO:0097159,GO:0097659,GO:0098654,GO:0098687,GO:0098732,GO:0098813,GO:0140014,GO:0140096,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1902494,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1904949,GO:1990234,GO:1990483,GO:1990837,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.chromatin organization
EggNOG OGsKOG0264@1,KOG0264@2759
Ec32 ortholog descriptionNurf-55
Ec32 orthologEc-21_004560.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Exons5
Model size642
Cds size642
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17490.4138.1prot_H-paniculata_contig17490.4138.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17490 411..3309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929373.4048262-CDS-H-paniculata_contig17490:410..5111622929373.4048262-CDS-H-paniculata_contig17490:410..511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17490 411..511 +
1691480835.4700615-CDS-H-paniculata_contig17490:410..5111691480835.4700615-CDS-H-paniculata_contig17490:410..511Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17490 411..511 +
1622929373.4217477-CDS-H-paniculata_contig17490:1103..12671622929373.4217477-CDS-H-paniculata_contig17490:1103..1267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17490 1104..1267 +
1691480835.48168-CDS-H-paniculata_contig17490:1103..12671691480835.48168-CDS-H-paniculata_contig17490:1103..1267Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17490 1104..1267 +
1622929373.4365835-CDS-H-paniculata_contig17490:1852..19921622929373.4365835-CDS-H-paniculata_contig17490:1852..1992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17490 1853..1992 +
1691480835.4899657-CDS-H-paniculata_contig17490:1852..19921691480835.4899657-CDS-H-paniculata_contig17490:1852..1992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17490 1853..1992 +
1622929373.4527588-CDS-H-paniculata_contig17490:2614..26621622929373.4527588-CDS-H-paniculata_contig17490:2614..2662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17490 2615..2662 +
1691480835.4986615-CDS-H-paniculata_contig17490:2614..26621691480835.4986615-CDS-H-paniculata_contig17490:2614..2662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17490 2615..2662 +
1622929373.4668052-CDS-H-paniculata_contig17490:3120..33091622929373.4668052-CDS-H-paniculata_contig17490:3120..3309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17490 3121..3309 +
1691480835.5071514-CDS-H-paniculata_contig17490:3120..33091691480835.5071514-CDS-H-paniculata_contig17490:3120..3309Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17490 3121..3309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17490.4138.1

>prot_H-paniculata_contig17490.4138.1 ID=prot_H-paniculata_contig17490.4138.1|Name=mRNA_H-paniculata_contig17490.4138.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=214bp
MPQNEFVIATKSPSADVCVFDISKHPSVPPANSGCKPEHRCKGHTKEGYG
LSWNPHVEGRLLSGSDDSLVCYWDLREGGQTVDATQKFEGHTSVIGDVAW
HQHNPKLFGSVGDDKQLLFWDTSTNGSKPTTVVPEPMHLLERHTSEVGDG
EVLGVQWAPFDETILGSCSADRRVKVWSLSRIGEEQAPEDAEDGPPELLF
IHGGHTSRVGDFRC
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mRNA from alignment at H-paniculata_contig17490:411..3309+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17490.4138.1 ID=mRNA_H-paniculata_contig17490.4138.1|Name=mRNA_H-paniculata_contig17490.4138.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2899bp|location=Sequence derived from alignment at H-paniculata_contig17490:411..3309+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCCAGAACGAGTTCGTCATCGCAACCAAGTCTCCGTCAGCGGACGT
GTGCGTCTTCGACATCTCCAAGCACCCCAGCGTGCCTCCAGCAAACAGCG
GGTGAGTGGCTATTGGGCGATATTGTGTGAAACGAATTTGCGGTGTAAGT
AGAGCAGGTTCAAGAAAAGCAAGAATGGCGTCGTATACTTTTCAATTTTT
CGTGACGAGAGCATTCTAACTATATTCGTATTGGTCGGGGGGGGGGGTAT
ATACTCCAGTATATATATATATATGTTTTTTTTTAACCCTCGGACAAGTA
CGAAAATTTGGCGTATTCGCCACGAAAATTGAAAAGTATTTGCCTGGGTT
TCAGAATGAGCTCTTGTGTTTATTCTATGTGCCCCCCAGACCTTTCACGA
CTGTTATTACTGTTCGTAAATCGATTTGGATAAGGATGGGTATTATATTC
CATGTATCCGCTTATTCTGAAACTCAGGCGAATACCTTGTTGATTTTCGT
GGCGACTATGCCAAATGTTATTCGTATATTTGTCCGGGAGGTGATATGTA
ATGACACCTACATTCGTTTGTTTGGCTCTCGTAATGTTTTTTTTTTTTTT
TTTCAACCTTTTTGCCTTTTTCGTTTTTTGTTAATAAATGCATACACCAT
CGTGTTGTCGGCGGGTGTGTTCATTTTGCGTGTATGTCGAAAGATGCAAA
CCGGAGCATCGATGCAAGGGGCACACAAAGGAAGGCTACGGGTTGAGCTG
GAACCCGCACGTGGAGGGACGGTTGTTGTCAGGCAGTGATGACAGCTTAG
TGTGCTACTGGGACCTCAGGGAGGGTGGACAGACGGTCGATGCGACTCAA
AAGTTCGGTGAGCATTTTCTTATTTATTTATTTATTTATTTCTGTTATCG
TCGACTGATGGTATAGTGTGTAGTGCTTTTGGATGTGATGTACTGACTAC
AGTGTTATAAGAAACAAGCAGTGCTGCATTTATATTGTTCTGGCGTTATT
CTGTACTCGCATTATTAGTGCAGGTGGTACTGCACTGGTTTTTCGATGAC
ACGAAATGTACTTCTTCCGGTTCGCGTCCCGTTGCCATCTCCCCCCCCCC
CCGTTAACTGCACGCTGCTGACTGCTGGCAGCGAACACGAGATTTTTGCT
ATTCGCACCTGCTGCGTCATCGCACCCCCACTGTTGCACCTGCTTTTTTC
ATGTACGCATAACCCCGCTCTGCTGGCGCACCGGTGCGATCTGCAACAGC
AGATTTCATTTTCCTTCCCATCCGGTGCGCCAGCAAAGGGTTTTACGGTA
TCCAGCCATGACATTTTTTTTTGTTCTTTGTAGGCGAATCAACCTCAGCA
TGTACCCTCTATTCTAACGGAGTGATCCCCCCCCTCCGGCAAAATCCGGT
ATTGTCCTCCGATGATATCCTTGAATGAACGAATGTATGCAGAGGGGCAC
ACTTCGGTGATTGGCGACGTAGCGTGGCATCAGCACAACCCAAAACTTTT
TGGTTCGGTAGGCGACGACAAACAACTTCTGTTCTGGGACACGTCGACGA
ACGGATCCAAGCCAACGACAGTAGTTCCCGAGGTATGTATTTGTCTATGG
AAGGTACTCCAGTAAAACAAACAAGCCCTGAAAAATGCTTCTCTGTAGTA
GTAGCCTCTCGCCCCCCCCCCGCCCCGCCACGCCACGCCACGCCCACGCC
CATGTACAATGTAAGTGTGGTGATGGACAAGAAGCACGTGTGGATAGTCG
TTCCTTGTGGGATGCAGGACACAGCAAGTAAAAGCAGGGCGAAAAAGACC
CGATCAAAATCGTGTGTGTGTGTGTGTGTGATAAAAATCGTTCGTGATTT
TGGCGAAAGAACACGATGGACAGGCATAAGCGCAACAGTCCTTCGTGATG
GATGGATGTTATGTATTCATCATGTGTTCTAAAACAAATCATTGGCCCTC
GATTGCGCGAATAGCCTGCCAAGAAACAAACGGACCGATTGTAGAACCTT
CGAACACATGGACAATGCTCGCTCACGATATTTCGATCCCGCTGATACCA
TCCCCCACCACCATTACCACCACCGCCACTACCCGCACAGGCGCATTCGG
CGAACATTAACTGCTTGGCCTTCAATCCATTCAGCGAGTTCTTGCTGGCG
ACAGGATCGTCCGACACAGTCGTAGCTCTCTGGGACATGCGGAACATGGG
GCAGCCAATGCATTTGTTGGAGCGGCACACCAGCGAGGTGGGCGATGGAG
AGGTGCGCACACAGCAGCCCGCAGCAGGCAGTAGCAATACCACCACCACC
AGCAGCAGCAGTGCTTCCGGGGTGCTGACTTTTGCTTTTTACTCTTGGCA
TGGTGGCAATCACGTTTTACTCTGTATGCATGTATGGATACATCGATGTA
CAGCGGAGCACACAGCCTTTTTATGTGTGTGAGCTAACCTCCTGAGCCCC
CCCTTTGATGAAGTAAAAGGGAAAAAAAAAAAAAAAAATGTGTTTTGCTA
GTTTCGACTTAGATTCTTTTTTTTTCTTTTTTTTGCCCTTCCCCCCAAAA
ATTCAAACTCAAAAAGTGTGATGTAATTTCTCGATTTTGGACGTTTTGGT
GTTGGTGTTATATCCACCTGCCTTTCCCCAGAAAAACTCAACAAAAGACT
AAAGTAAAGGTAGCCATTAAGTAAATGGAACCGTCTCATTTGGTGTCTTC
GTTGCTTCAGGTGTTGGGAGTCCAATGGGCACCTTTCGACGAGACAATCC
TAGGGTCGTGTAGCGCCGACCGAAGGGTAAAGGTGTGGAGCTTGAGCCGC
ATCGGTGAAGAACAGGCGCCCGAAGACGCGGAAGATGGCCCACCGGAGCT
TCTCTTCATACACGGGGGACACACGAGCCGAGTAGGGGACTTCAGGTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig17490:411..3309+

>mRNA_H-paniculata_contig17490.4138.1 ID=mRNA_H-paniculata_contig17490.4138.1|Name=mRNA_H-paniculata_contig17490.4138.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1284bp|location=Sequence derived from alignment at H-paniculata_contig17490:411..3309+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCCAGAACGAGTTCGTCATCGCAACCAAGTCTCCGTCAGCGGACGT
GTGCGTCTTCGACATCTCCAAGCACCCCAGCGTGCCTCCAGCAAACAGCG
GATGCCCCAGAACGAGTTCGTCATCGCAACCAAGTCTCCGTCAGCGGACG
TGTGCGTCTTCGACATCTCCAAGCACCCCAGCGTGCCTCCAGCAAACAGC
GGATGCAAACCGGAGCATCGATGCAAGGGGCACACAAAGGAAGGCTACGG
GTTGAGCTGGAACCCGCACGTGGAGGGACGGTTGTTGTCAGGCAGTGATG
ACAGCTTAGTGTGCTACTGGGACCTCAGGGAGGGTGGACAGACGGTCGAT
GCGACTCAAAAGTTCGATGCAAACCGGAGCATCGATGCAAGGGGCACACA
AAGGAAGGCTACGGGTTGAGCTGGAACCCGCACGTGGAGGGACGGTTGTT
GTCAGGCAGTGATGACAGCTTAGTGTGCTACTGGGACCTCAGGGAGGGTG
GACAGACGGTCGATGCGACTCAAAAGTTCGAGGGGCACACTTCGGTGATT
GGCGACGTAGCGTGGCATCAGCACAACCCAAAACTTTTTGGTTCGGTAGG
CGACGACAAACAACTTCTGTTCTGGGACACGTCGACGAACGGATCCAAGC
CAACGACAGTAGTTCCCGAGAGGGGCACACTTCGGTGATTGGCGACGTAG
CGTGGCATCAGCACAACCCAAAACTTTTTGGTTCGGTAGGCGACGACAAA
CAACTTCTGTTCTGGGACACGTCGACGAACGGATCCAAGCCAACGACAGT
AGTTCCCGAGCCAATGCATTTGTTGGAGCGGCACACCAGCGAGGTGGGCG
ATGGAGAGCCAATGCATTTGTTGGAGCGGCACACCAGCGAGGTGGGCGAT
GGAGAGGTGTTGGGAGTCCAATGGGCACCTTTCGACGAGACAATCCTAGG
GTCGTGTAGCGCCGACCGAAGGGTAAAGGTGTGGAGCTTGAGCCGCATCG
GTGAAGAACAGGCGCCCGAAGACGCGGAAGATGGCCCACCGGAGCTTCTC
TTCATACACGGGGGACACACGAGCCGAGTAGGGGACTTCAGGTGTGTGTT
GGGAGTCCAATGGGCACCTTTCGACGAGACAATCCTAGGGTCGTGTAGCG
CCGACCGAAGGGTAAAGGTGTGGAGCTTGAGCCGCATCGGTGAAGAACAG
GCGCCCGAAGACGCGGAAGATGGCCCACCGGAGCTTCTCTTCATACACGG
GGGACACACGAGCCGAGTAGGGGACTTCAGGTGT
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