mRNA_H-paniculata_contig17480.4135.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17480.4135.1
Unique NamemRNA_H-paniculata_contig17480.4135.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17480.4135.1 vs. uniprot
Match: A0A6H5KSI6_9PHAE (Amino_oxidase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI6_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 6.740e-8
Identity = 40/92 (43.48%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:  100 LPRECIAFAPGALLHRRISHFGAKPYAKWPACRVTTMATTQSDSVLAGESGVAADVIVNRKKVIVIGAGWAGLAAAHELSKQKE-FDVTLLE 372
            L RE  AF P   +   + H  A  +A   + R T  +  Q++     ++   A     +KKV+VIGAGWAGLAAA+ELSKQ + FDVTLLE
Sbjct:   28 LSRESSAFVPAVRVGSSLQHHAAGSHAS--SSRRTVSSKMQAELAAEVDTINEAAEGDGKKKVVVIGAGWAGLAAAYELSKQNDDFDVTLLE 117
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BLAST of mRNA_H-paniculata_contig17480.4135.1 vs. uniprot
Match: A0A6I9R1P7_ELAGV (uncharacterized protein LOC105042554 isoform X1 n=3 Tax=Arecaceae TaxID=4710 RepID=A0A6I9R1P7_ELAGV)

HSP 1 Score: 54.7 bits (130), Expect = 3.750e-6
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:  274 NRKKVIVIGAGWAGLAAAHELSKQKEFDVTLLE 372
            NRKKV+V+GAGWAGLA+AH LSKQ  FDVTLLE
Sbjct:   39 NRKKVVVVGAGWAGLASAHHLSKQG-FDVTLLE 70
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BLAST of mRNA_H-paniculata_contig17480.4135.1 vs. uniprot
Match: D8LG87_ECTSI (Amine oxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG87_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 6.910e-6
Identity = 27/33 (81.82%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:  277 RKKVIVIGAGWAGLAAAHELSKQKE-FDVTLLE 372
            +KKV+VIGAGWAGLAAA+ELSKQ + FDVTLLE
Sbjct:   21 KKKVVVIGAGWAGLAAAYELSKQNDDFDVTLLE 53
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BLAST of mRNA_H-paniculata_contig17480.4135.1 vs. uniprot
Match: A0A6P6GEY9_ZIZJJ (L-amino-acid oxidase-like n=1 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P6GEY9_ZIZJJ)

HSP 1 Score: 48.9 bits (115), Expect = 4.320e-5
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:  268 IVNRKKVIVIGAGWAGLAAAHELSKQKEFDVTLLE 372
            ++ +KKV+V+G+GWAGL AAH L KQ  FDVT+LE
Sbjct:   44 VIKKKKVVVVGSGWAGLGAAHHLCKQG-FDVTVLE 77
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BLAST of mRNA_H-paniculata_contig17480.4135.1 vs. uniprot
Match: UPI00125D8874 (uncharacterized protein LOC116012410 isoform X1 n=5 Tax=Ipomoea TaxID=4119 RepID=UPI00125D8874)

HSP 1 Score: 51.2 bits (121), Expect = 6.090e-5
Identity = 23/45 (51.11%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:  238 AGESGVAADVIVNRKKVIVIGAGWAGLAAAHELSKQKEFDVTLLE 372
            A +S +  +   N+KKV+V+G+GWAGL AAH L KQ+ FDV ++E
Sbjct:   29 AAQSAITVNQRPNKKKVLVVGSGWAGLGAAHHLCKQECFDVMVIE 73
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BLAST of mRNA_H-paniculata_contig17480.4135.1 vs. uniprot
Match: A0A804LA29_MUSAM (Amino_oxidase domain-containing protein n=3 Tax=Musa TaxID=4640 RepID=A0A804LA29_MUSAM)

HSP 1 Score: 50.8 bits (120), Expect = 8.280e-5
Identity = 25/33 (75.76%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:  274 NRKKVIVIGAGWAGLAAAHELSKQKEFDVTLLE 372
            +RKKV+V+GAGWAGLA+AH L KQ  FDVTLLE
Sbjct:   45 SRKKVVVVGAGWAGLASAHHLCKQG-FDVTLLE 76
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BLAST of mRNA_H-paniculata_contig17480.4135.1 vs. uniprot
Match: A0A2K1KXK0_PHYPA (Amino_oxidase domain-containing protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KXK0_PHYPA)

HSP 1 Score: 50.8 bits (120), Expect = 8.390e-5
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:  277 RKKVIVIGAGWAGLAAAHELSKQKEFDVTLLE 372
            RKKV+V+GAGWAGL AAH L+KQ  FDVTLLE
Sbjct:   88 RKKVVVVGAGWAGLGAAHHLTKQG-FDVTLLE 118
[Close]
BLAST of mRNA_H-paniculata_contig17480.4135.1 vs. uniprot
Match: A0A7J0DI42_9ERIC (Amino_oxidase domain-containing protein n=2 Tax=Actinidia TaxID=3624 RepID=A0A7J0DI42_9ERIC)

HSP 1 Score: 50.8 bits (120), Expect = 8.420e-5
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:  265 VIVNRKKVIVIGAGWAGLAAAHELSKQKEFDVTLLE 372
            ++ N+KKV+V+G+GWAGL AAH LSKQ  FDVT+LE
Sbjct:   33 LVRNKKKVLVVGSGWAGLGAAHHLSKQG-FDVTVLE 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17480.4135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KSI6_9PHAE6.740e-843.48Amino_oxidase domain-containing protein n=1 Tax=Ec... [more]
A0A6I9R1P7_ELAGV3.750e-681.82uncharacterized protein LOC105042554 isoform X1 n=... [more]
D8LG87_ECTSI6.910e-681.82Amine oxidase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6P6GEY9_ZIZJJ4.320e-562.86L-amino-acid oxidase-like n=1 Tax=Ziziphus jujuba ... [more]
UPI00125D88746.090e-551.11uncharacterized protein LOC116012410 isoform X1 n=... [more]
A0A804LA29_MUSAM8.280e-575.76Amino_oxidase domain-containing protein n=3 Tax=Mu... [more]
A0A2K1KXK0_PHYPA8.390e-578.13Amino_oxidase domain-containing protein n=2 Tax=Ph... [more]
A0A7J0DI42_9ERIC8.420e-566.67Amino_oxidase domain-containing protein n=2 Tax=Ac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17480contigH-paniculata_contig17480:3728..5088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size374
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929372.7716773-CDS-H-paniculata_contig17480:3727..37541622929372.7716773-CDS-H-paniculata_contig17480:3727..3754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17480 3728..3754 -
1691480835.1999216-CDS-H-paniculata_contig17480:3727..37541691480835.1999216-CDS-H-paniculata_contig17480:3727..3754Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17480 3728..3754 -
1622929372.791884-CDS-H-paniculata_contig17480:4743..50881622929372.791884-CDS-H-paniculata_contig17480:4743..5088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17480 4744..5088 -
1691480835.2115052-CDS-H-paniculata_contig17480:4743..50881691480835.2115052-CDS-H-paniculata_contig17480:4743..5088Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17480 4744..5088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17480.4135.1prot_H-paniculata_contig17480.4135.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17480 3728..5088 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17480.4135.1

>prot_H-paniculata_contig17480.4135.1 ID=prot_H-paniculata_contig17480.4135.1|Name=mRNA_H-paniculata_contig17480.4135.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
CIHVQVRQHLVVARTSTSNMHISAYVLLFVAYLLPRECIAFAPGALLHRR
ISHFGAKPYAKWPACRVTTMATTQSDSVLAGESGVAADVIVNRKKVIVIG
AGWAGLAAAHELSKQKEFDVTLLE
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mRNA from alignment at H-paniculata_contig17480:3728..5088-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17480.4135.1 ID=mRNA_H-paniculata_contig17480.4135.1|Name=mRNA_H-paniculata_contig17480.4135.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1361bp|location=Sequence derived from alignment at H-paniculata_contig17480:3728..5088- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTATCCATGTACAAGTTAGGCAGCATCTTGTAGTTGCTCGCACCTCAAC
GTCCAATATGCATATCAGTGCTTATGTTCTGCTTTTTGTGGCCTATCTCC
TACCACGGGAGTGCATCGCCTTCGCCCCTGGAGCATTATTGCACCGACGG
ATATCACATTTCGGAGCCAAACCATATGCGAAATGGCCGGCTTGCAGGGT
GACAACGATGGCAACGACACAGTCGGATAGCGTGCTAGCAGGAGAGTCGG
GTGTAGCCGCGGATGTCATTGTGAATAGGAAGAAAGTGATTGTGATAGGT
GCTGGATGGGCCGGGCTTGCTGCGGCTCACGAGCTGTCGAAACAGGTGCT
TTTACTAACTTGGGGATGCGTTCGTCTATATTGTTGAAAAGCTCTAAACA
TGAACTTCAGGTGCGTATGATATGATATGTATCCGTCTTTCAACCTCAGA
CGAAAGCAGCAGATTATGTGTGCTGTCCAGGCCACCGAAACGCCGGGAGC
TGGAACCTAAACCCAGGACAGTACAGAGAAACGCTTGAAAGAATGTTAGG
ATCAACCAAGGGTCAAGCGTGATATGTAATACATGCGACCCATGTTCAAG
TTGAGAACTGACTTGACCTGACGCATAAAATTTGAAATTGCCCCACACCT
TAACCTTCTGACAGGCTGTGCTCGCAGTAGCTCGTCGTTTATAGTAATAT
TCAATCTTCTACGAGTTGCTAGGCTCGAGGTAATTGGGATTACAGGGCGA
GTGTGTAAATGGGACAGAAGCAGAAGATATCATTGGTTTATACAGACGAG
TGCAGTAAGGCATACTACCTGATATACAAGACTGTTCCGAAACTTGGCGC
ATTTGTTTATACTTTACAGCAAGGCACACTACCGGGTATAATATACTGTT
CCGAAACTTAGCGCATTATGAGGACTTGAGCACAGGCATGCTGAATACTG
CATGAAGTGAGGTTGGGTGAAGCGATATTTCACCGAATGGAGGTTTTGCA
GGAACACCGCTCGTCAGTCAATATTGATATCCCACCGAATCTGTAAGATT
TGAAGATATCTACAGTACCACAATTTATGCCGACCTTGCGTGCCTTGCTC
TTAACTCAAGGTCCATCGTTACGTGGTCGCCTTGATCCAATCATATGATG
TGCTTGGCACACGGCACTCCAAAGCAATCATTACTCGCTCTTTCGCTTGA
GTTTCTGCGAGGCCAATAAGCGACAAAAAAAATCGTAGAGATGATTTGCG
ATAGCACCAACAGGATTCTTTCAGGCGCCAATTTTCAGTCATATCTTTCT
TATTCTTCAACTTGCGTGTCCGATTATCCTGCAGAAGGAGTTCGACGTAA
CATTGCTGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig17480:3728..5088-

>mRNA_H-paniculata_contig17480.4135.1 ID=mRNA_H-paniculata_contig17480.4135.1|Name=mRNA_H-paniculata_contig17480.4135.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig17480:3728..5088- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTATCCATGTACAAGTTAGGCAGCATCTTGTAGTTGCTCGCACCTCAAC
GTCCAATATGCATATCAGTGCTTATGTTCTGCTTTTTGTGGCCTATCTCC
TACCACGGGAGTGCATCGCCTTCGCCCCTGGAGCATTATTGCACCGACGG
ATATCACATTTCGGAGCCAAACCATATGCGAAATGGCCGGCTTGCAGGGT
GACAACGATGGCAACGACACAGTCGGATAGCGTGCTAGCAGGAGAGTCGG
GTGTAGCCGCGGATGTCATTGTGAATAGGAAGAAAGTGATTGTGATAGGT
GCTGGATGGGCCGGGCTTGCTGCGGCTCACGAGCTGTCGAAACAGTGTAT
CCATGTACAAGTTAGGCAGCATCTTGTAGTTGCTCGCACCTCAACGTCCA
ATATGCATATCAGTGCTTATGTTCTGCTTTTTGTGGCCTATCTCCTACCA
CGGGAGTGCATCGCCTTCGCCCCTGGAGCATTATTGCACCGACGGATATC
ACATTTCGGAGCCAAACCATATGCGAAATGGCCGGCTTGCAGGGTGACAA
CGATGGCAACGACACAGTCGGATAGCGTGCTAGCAGGAGAGTCGGGTGTA
GCCGCGGATGTCATTGTGAATAGGAAGAAAGTGATTGTGATAGGTGCTGG
ATGGGCCGGGCTTGCTGCGGCTCACGAGCTGTCGAAACAGAAGGAGTTCG
ACGTAACATTGCTGGAGAAGGAGTTCGACGTAACATTGCTGGAG
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