mRNA_H-paniculata_contig17467.4132.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17467.4132.1
Unique NamemRNA_H-paniculata_contig17467.4132.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig17467.4132.1 vs. uniprot
Match: D7G7I1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I1_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 1.540e-26
Identity = 72/115 (62.61%), Postives = 82/115 (71.30%), Query Frame = 1 
Query:    1 QINIATSSLATAGEGLLRQIREVKLAVILQDDAAMDCEVDQALFKIAKEREQLEKELEALSNELKAAYAKAAMGGRELTAAEVDRGDALVNN--GDVSMTGGSGDIQRRSGGLTG 339
            Q+N+AT+SLATAGEGLLRQIRE+KLAV+LQD+AAMD EVDQAL KIA ERE+LEKELEALSN+LK AYAKAAM G      + D   A V    G VS   G   +  R G   G
Sbjct:   62 QVNVATASLATAGEGLLRQIRELKLAVMLQDEAAMDLEVDQALAKIASEREELEKELEALSNDLKGAYAKAAMAG----GGDADSSSATVTGVEGVVSSFSGMDVVGERQGDAMG 172
[Close]
BLAST of mRNA_H-paniculata_contig17467.4132.1 vs. uniprot
Match: A0A6H5JD54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD54_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 8.480e-26
Identity = 67/97 (69.07%), Postives = 78/97 (80.41%), Query Frame = 1 
Query:    1 QINIATSSLATAGEGLLRQIREVKLAVILQDDAAMDCEVDQALFKIAKEREQLEKELEALSNELKAAYAKAAMGG--------RELTAAEVDRGDAL 267
            Q+N+AT+SLATAGEGLLRQIRE+KLAV+LQD+AAMD EVDQAL KIA ER++LEKELEALSNELK AYAKAAM G          +T  E  +GDA+
Sbjct:  116 QVNVATASLATAGEGLLRQIRELKLAVMLQDEAAMDLEVDQALAKIATERKELEKELEALSNELKGAYAKAAMAGGGDADSSSATVTGVEKRQGDAM 212
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17467.4132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7I1_ECTSI1.540e-2662.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD54_9PHAE8.480e-2669.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17467contigH-paniculata_contig17467:414..4556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMediator complex, subunit Med22
Ec32 orthologEc-02_000370.1
Exons2
Model size1608
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17467.4132.1prot_H-paniculata_contig17467.4132.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17467 3051..3449 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929372.29984-UTR-H-paniculata_contig17467:413..5031622929372.29984-UTR-H-paniculata_contig17467:413..503Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17467 414..503 +
1691480834.947448-UTR-H-paniculata_contig17467:413..5031691480834.947448-UTR-H-paniculata_contig17467:413..503Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17467 414..503 +
1622929372.3324144-UTR-H-paniculata_contig17467:3038..30501622929372.3324144-UTR-H-paniculata_contig17467:3038..3050Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17467 3039..3050 +
1691480834.9575768-UTR-H-paniculata_contig17467:3038..30501691480834.9575768-UTR-H-paniculata_contig17467:3038..3050Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17467 3039..3050 +
1622929372.3619876-UTR-H-paniculata_contig17467:3449..45561622929372.3619876-UTR-H-paniculata_contig17467:3449..4556Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17467 3450..4556 +
1691480834.9766185-UTR-H-paniculata_contig17467:3449..45561691480834.9766185-UTR-H-paniculata_contig17467:3449..4556Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17467 3450..4556 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929372.3477652-CDS-H-paniculata_contig17467:3050..34491622929372.3477652-CDS-H-paniculata_contig17467:3050..3449Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17467 3051..3449 +
1691480834.968376-CDS-H-paniculata_contig17467:3050..34491691480834.968376-CDS-H-paniculata_contig17467:3050..3449Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17467 3051..3449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17467.4132.1

>prot_H-paniculata_contig17467.4132.1 ID=prot_H-paniculata_contig17467.4132.1|Name=mRNA_H-paniculata_contig17467.4132.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
MDCEVDQALFKIAKEREQLEKELEALSNELKAAYAKAAMGGRELTAAEVD
RGDALVNNGDVSMTGGSGDIQRRSGGLTGSADLHGSSGGTSESRDIAISG
EGVGKGEDRLDSSGSVLEGERMCIQGGQEAPR*
back to top

mRNA from alignment at H-paniculata_contig17467:414..4556+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17467.4132.1 ID=mRNA_H-paniculata_contig17467.4132.1|Name=mRNA_H-paniculata_contig17467.4132.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4143bp|location=Sequence derived from alignment at H-paniculata_contig17467:414..4556+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGATTAATATCGCGACTTCGAGTCTCGCCACGGCCGGGGAAGGGCTGTT
GCGCCAAATCCGCGAGGTTAAATTAGCTGTCATATTGCAGGTGAGAAGAA
GATATGATCCTTCTTATATCGACTGTTGGTAAATTGAAAATTTGAAGGCC
ATTTTGTATCTTAATTTTTTCAGGTGTTTCCGTGATGACCATGATCGTGA
TCTGTTAGCATGGTGTTGCATACTTTTCGAGAGCGTTTTCGTCGATTGGA
GGTCTTTTCTCGCAACGGTTTTAAACACCTGAGCACTGAGTGTTCTTTAC
GGCGTAGCCATGCCAGCAGCCGAGGCTGAACCCATGCCGTAAAAGCCATA
ATCAAAGGATTTCCGCCACGCATAAAATGCCGGAGACAATGGCTATCTGT
ACAGGTGAAATTCCAACTCTGATTCTTCAGGAGTCAGTTGATATGTTTAT
GAAAATGTATCCTGCCATAACGCTAATTTTCAGGTGTTGTAAGGTACAGT
CCTTCAATTTTCAGCTCAGTATTAATTGCCGTTTTCAATTGTTTTCGTTT
GGAGCCAACTGTATTAATGTCTTGGCATTTGATGATATTAAACATCAACA
CTGCTCGGAGGTGTGGCTGAGTGGTAGCGATAGCACTTGCTACTTATTCT
GTGCTGTAGGCAAGTCAGTTGTGCTTATAGAGGCACGTAATCATCTCCCT
TTTTTTTCTAATTGTGACCCTATATGTTTTTGGCGTTGATGCCCAAAATT
CACGGAATTTTCGAAATCCATCGGGAGCGCGCGGCGCTACAAAAAAGGTC
GGCCGAAAAGAGGACACGTTTTTTGCCCCTTTTCCTATCGAAAAAGTTAT
GAAAATTGTCAAAATTTGCCCAACCTTGAGCGGCCATCAGTCCTCATGCG
CAAATCGGAATGCACTCCGGAAAAGCGCATATGAACCTCTTAGATTTCAG
CCTTCCAAAGATTTCAAGTGTAGACTCTAAACTGGAGAAATAATCGGCCA
AATACAACCGACTTTACCTACGGCATATACTTAATTGTGAAGCCTTACCG
CTGGAGCGGAGAACACGGAAGCACTTGGTCTTTCGTCGAACTGTTCCAGA
ATCCCATGAACAACTTGCCACATCGTAGGCTCTTGCCTCTCTCTCTCTCT
CTCTCTCTCACACACACACACACGCACACACACACATACATATATATATA
TATATGACACTAAAAACCAGGTAGCTAAGCGCTGTAAATGAAACGCTTGA
GCTTCGAAAGCTACGAAAATGATCATGATTTTTGCTCAAAATCTTGTCGA
AAGACAGACGACTTGATACTTGACATTTTGTAAATCTGAAGGAACCAGAC
CTCTTTGCACCCAAAGCACTCGTCACTAATAGCAAGTGCATTAACAACAG
TCTGCAAACCACCACAATTCACCAAAGACGCTAATCGACATCAGAGGGCT
AATGGACGCATCTCAATTCTCGAGAGGGTCGTTTTGTTTGCCTGTCAGGG
CTGTATCCTCTTGGGTGGTTAGTGTATAGGGTCAACGACCAAACACTGGG
GCTTGCTCATCATAGAAGGTAGTAGGTTATGTCGCACTCCGGCTGGGCAC
CTGCCAATTAGTTTCACAGATAAGACAGTTTTATAAGCCCATTTTTCCTG
AGGCGGCGGGGACAGCTGTGTTCGTCAACGGTCATTGTCCACAGTCATTT
CCTCTCTGTGTGGAGTCAGCTGATCGGCACTTTTTCTTTTTTTTTCGTGG
TGGCTCAGTTTTCTATCGAAAGTCCCGGTCCGACGCTAGGAGAGTAGTTT
CTGAACATTTGCCTGTATTCTCGCACTGTGGGGGCAGCAGTCGCACCCGC
CCTTCAATGCTGTAGTTGATGGCAGCATATTCTAACGAGTATTATTCTGC
CTTTCGAAGGCATTGTCGTCGCGTACCACGTTTTTTTCCCGGAAATAATT
GAGCGCACAAATTGTGAGTGCCATGGATTGAACCTGCAATCTACCGGTTG
GATGGGGTTTGTTAACTTTATCACGGGGGACACGGTCAGCACTGTCTAGC
TGCACAAGGTGTCGCAAGCCTTCTAGCTGTCAAGAAAGTCGACTTTGAAT
ACTGTTTTCTCTCTTTTGTTGTTGTTTTCATCCCCAAGAAGTAGAGGAGA
AGCTTAATTACACCATGTATTTTATATTGTGCCGAATCTAGTCTTTGATG
TAAAATACAACGTCAAAGTACTTGCGTTGTCGCATCGACTGGGAGTGATA
TTCAACATGACATAAACTACGGTGTTAAAATAACCGAAATTACAGTAACA
ATGCACCTACATAGCCCTGAGTGTGCAGATCGTACTACCGCTGTACCACC
ATTGCTACTCTCTTACCGCGTGTGATCACGACGATAGGTGGAGACATACT
GGTACCCTGACAACATAGGGCAGAGAAAGCATCCTGTTGGCTTCTGAAAA
TCGACACGCGAATTGCATACGAGTTTAGAATGAACAATATTTGAGCCTCT
AAAACCAAACGAAAAGAATCATAACCTATAACATGAAACCCCATCGAGTG
TGACAATACTTGCAGATTTACTTGAAACGTCTGATCCCATCAGACGCTAA
CTGGACTGTTGTCGTTCGTATTCAGGACGATGCTGCAATGGATTGCGAGG
TGGACCAAGCTCTCTTCAAGATCGCCAAAGAGCGAGAACAGTTAGAAAAG
GAGTTGGAAGCTTTATCCAACGAGCTCAAAGCCGCCTACGCCAAAGCAGC
CATGGGTGGAAGGGAGTTGACGGCGGCGGAAGTCGATCGCGGTGATGCTT
TGGTCAACAACGGGGACGTTAGTATGACAGGGGGAAGCGGGGATATTCAG
AGACGTAGTGGGGGCCTTACGGGAAGCGCAGATCTTCATGGCAGTAGCGG
AGGAACGAGCGAAAGCAGAGATATTGCCATCAGTGGTGAGGGTGTTGGAA
AAGGCGAAGATCGTCTAGACAGTAGCGGGAGCGTTTTGGAGGGGGAACGA
ATGTGCATACAAGGAGGACAGGAGGCCCCGCGATGACGCAAACTGCTTGC
TGGTGATAAGTGTTCTGTCCGCTTAGTGCGATTTCAACCCTCGGGCAAGG
TTTTGCAGTCTCTTTATGTTATCTGAGGATGAACGACTCTGTTATCTTGG
GACAGTAGAATATAACCCTCGCTATAGGATGTGGTTGCAAGGGACAGCGA
TTTAGTTATCCCTTCAGCAGTACAAAGAGGAAAACATGCGCCTACATCGT
AAGAACTTCTCACACTGTTTTTTTGTATGCTTCGTTCGAGTGGGGAGCAA
ATTCTTCGTGCGCCGTGCCGGCTCAAGCTTGGCTGATTCATTCACCTTCT
CGCGTGCTCGAGGTATCGTGGGCTGTGTTGTTGTATTGGCTTCGGTGATT
AGATTGGGGTAGGTGGCAGGGTTGGTATTGGAGGAAGGCGGTCAGGTTTA
CTGTTTAAGAGATTACTTTCGGTGCCAGCGGTACGACCCTATTGAAATTG
GACATTTCCATAAACTGGACCGTTGAGAACCAATTTATTCTTCAGGGAGG
TATATGCACATCGTATCTTTCAAGATGATCCGAAGCGCTCGTCACTTCTG
AGACCAATTGTCAGTCAGAGGGTCAGGGTCTTTCGACAAGGTTAGGCCTG
GAGCTAATTGTGTACCATAGAGTTCGGCGATCACACTGCAGTAAGGCGAG
GCTGAAACGAAGAACCAGATATGTGGAGGGGGAATATCGGCCTATAGCGA
CACGCCTTACGTTCAGAGATGATCGTGTGCCGAAAGCTTTTTCGCTCGGA
AAGATATTATTGAGATGCAGTTTTTTCGAAAGCAAGAACGTTGCACGGGC
AGGGCCTTGCTTCTCGGGCAAGTCCAGCGTGAAGAACCGTTTGAATCATC
CGAGGTGATATACCACGTAGACTGCGGTTGGCGTTTCGAGTTGGCAGTTT
CCGGAGGCGGCACGTGACGTTGGACGGTACAGAAGATCACGATATATTGT
GACTTCGTGTGGCCAACATATCGCACAGAGTAGAGAGAACGCCCAGGGAG
AGAGAACACGCTGCTGGGGGTATCAAAGGAGCTGAGATACCTCGAATGCC
CAGGACGGCATATCAAATCCGCAAAAACAATATAATGGTCAAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig17467:414..4556+

>mRNA_H-paniculata_contig17467.4132.1 ID=mRNA_H-paniculata_contig17467.4132.1|Name=mRNA_H-paniculata_contig17467.4132.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig17467:414..4556+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATTGCGAGGTGGACCAAGCTCTCTTCAAGATCGCCAAAGAGCGAGA
ACAGTTAGAAAAGGAGTTGGAAGCTTTATCCAACGAGCTCAAAGCCGCCT
ACGCCAAAGCAGCCATGGGTGGAAGGGAGTTGACGGCGGCGGAAGTCGAT
CGCGGTGATGCTTTGGTCAACAACGGGGACGTTAGTATGACAGGGGGAAG
CGGGGATATTCAGAGACGTAGTGGGGGCCTTACGGGAAGCGCAGATCTTC
ATGGCAGTAGCGGAGGAACGAGCGAAAGCAGAGATATTGCCATCAGTGGT
GAGGGTGTTGGAAAAGGCGAAGATCGTCTAGACAGTAGCGGGAGCGTTTT
GGAGGGGGAACGAATGTGCATACAAGGAGGACAGGAGGCCCCGCGATGAA
TGGATTGCGAGGTGGACCAAGCTCTCTTCAAGATCGCCAAAGAGCGAGAA
CAGTTAGAAAAGGAGTTGGAAGCTTTATCCAACGAGCTCAAAGCCGCCTA
CGCCAAAGCAGCCATGGGTGGAAGGGAGTTGACGGCGGCGGAAGTCGATC
GCGGTGATGCTTTGGTCAACAACGGGGACGTTAGTATGACAGGGGGAAGC
GGGGATATTCAGAGACGTAGTGGGGGCCTTACGGGAAGCGCAGATCTTCA
TGGCAGTAGCGGAGGAACGAGCGAAAGCAGAGATATTGCCATCAGTGGTG
AGGGTGTTGGAAAAGGCGAAGATCGTCTAGACAGTAGCGGGAGCGTTTTG
GAGGGGGAACGAATGTGCATACAAGGAGGACAGGAGGCCCCGCGATGA
back to top