mRNA_H-paniculata_contig17458.4130.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17458.4130.1
Unique NamemRNA_H-paniculata_contig17458.4130.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17458.4130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17458contigH-paniculata_contig17458:1652..2223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size380
Cds size198
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17458.4130.1prot_H-paniculata_contig17458.4130.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17458 1652..2041 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929371.5009084-CDS-H-paniculata_contig17458:1651..17101622929371.5009084-CDS-H-paniculata_contig17458:1651..1710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17458 1652..1710 +
1691480834.450315-CDS-H-paniculata_contig17458:1651..17101691480834.450315-CDS-H-paniculata_contig17458:1651..1710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17458 1652..1710 +
1622929371.5131059-CDS-H-paniculata_contig17458:1902..20411622929371.5131059-CDS-H-paniculata_contig17458:1902..2041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17458 1903..2041 +
1691480834.459881-CDS-H-paniculata_contig17458:1902..20411691480834.459881-CDS-H-paniculata_contig17458:1902..2041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17458 1903..2041 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929371.5258389-UTR-H-paniculata_contig17458:2041..22231622929371.5258389-UTR-H-paniculata_contig17458:2041..2223Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17458 2042..2223 +
1691480834.4691443-UTR-H-paniculata_contig17458:2041..22231691480834.4691443-UTR-H-paniculata_contig17458:2041..2223Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17458 2042..2223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17458.4130.1

>prot_H-paniculata_contig17458.4130.1 ID=prot_H-paniculata_contig17458.4130.1|Name=mRNA_H-paniculata_contig17458.4130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
DRHCCFQQGAAFEALGNRSWGCRSSSTLSSVYSECRCRKDYAPMKPRRQG
DGKGDVDGMKVWAVD*
back to top

mRNA from alignment at H-paniculata_contig17458:1652..2223+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17458.4130.1 ID=mRNA_H-paniculata_contig17458.4130.1|Name=mRNA_H-paniculata_contig17458.4130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=572bp|location=Sequence derived from alignment at H-paniculata_contig17458:1652..2223+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAGGCATTGTTGCTTTCAACAAGGCGCGGCTTTCGAGGCATTGGGAAA
TCGATCCTGGTAACACGATCGATTTTTCTTGTGGAACGTTTTCGGATCCT
TCCTTGGCAGTAAAATGAAAATGGTGTGTCCTTGACTATTGGTTGTGCCC
CCGATGCCCACTGCGCAGCCTCGATGGCTGTTAAATATGTTGGGATGTCA
CGCCTGAGTGATGAAAGATGAAACTTTACACAACACCGCTCCTTTGTTCA
GGGGATGTCGAAGCTCCAGTACGCTATCCTCCGTATATTCCGAGTGCCGC
TGTCGGAAGGATTATGCTCCGATGAAACCGAGGAGACAGGGAGACGGAAA
AGGAGATGTTGATGGAATGAAGGTTTGGGCTGTTGATTGAAGTGGAAAAC
TGTGGCGTCACATGTTTTTTCCATGGTTTTACTCCAGACGTTTTACGTGC
GTGCCTGTGTTGATCCGTTTTTCTGACGCCGCGTAGGTGTTGGACAGGTG
GCATTGATCATCACGGTTGGTGCGAGTGGTGCCATCCATTTGTTTTCTGG
TTTACCCTTGACGAGTACCCAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig17458:1652..2223+

>mRNA_H-paniculata_contig17458.4130.1 ID=mRNA_H-paniculata_contig17458.4130.1|Name=mRNA_H-paniculata_contig17458.4130.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig17458:1652..2223+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAGGCATTGTTGCTTTCAACAAGGCGCGGCTTTCGAGGCATTGGGAAA
TCGATCCTGGACAGGCATTGTTGCTTTCAACAAGGCGCGGCTTTCGAGGC
ATTGGGAAATCGATCCTGGGGATGTCGAAGCTCCAGTACGCTATCCTCCG
TATATTCCGAGTGCCGCTGTCGGAAGGATTATGCTCCGATGAAACCGAGG
AGACAGGGAGACGGAAAAGGAGATGTTGATGGAATGAAGGTTTGGGCTGT
TGATTGAGGGATGTCGAAGCTCCAGTACGCTATCCTCCGTATATTCCGAG
TGCCGCTGTCGGAAGGATTATGCTCCGATGAAACCGAGGAGACAGGGAGA
CGGAAAAGGAGATGTTGATGGAATGAAGGTTTGGGCTGTTGATTGA
back to top