mRNA_H-paniculata_contig17447.4129.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17447.4129.1
Unique NamemRNA_H-paniculata_contig17447.4129.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17447.4129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17447contigH-paniculata_contig17447:3263..3925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size663
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17447.4129.1prot_H-paniculata_contig17447.4129.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17447 3267..3641 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929371.4407465-UTR-H-paniculata_contig17447:3262..32661622929371.4407465-UTR-H-paniculata_contig17447:3262..3266Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17447 3263..3266 +
1691480834.42146-UTR-H-paniculata_contig17447:3262..32661691480834.42146-UTR-H-paniculata_contig17447:3262..3266Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17447 3263..3266 +
1622929371.4664621-UTR-H-paniculata_contig17447:3641..39251622929371.4664621-UTR-H-paniculata_contig17447:3641..3925Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17447 3642..3925 +
1691480834.4411466-UTR-H-paniculata_contig17447:3641..39251691480834.4411466-UTR-H-paniculata_contig17447:3641..3925Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17447 3642..3925 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929371.4538338-CDS-H-paniculata_contig17447:3266..36411622929371.4538338-CDS-H-paniculata_contig17447:3266..3641Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17447 3267..3641 +
1691480834.431457-CDS-H-paniculata_contig17447:3266..36411691480834.431457-CDS-H-paniculata_contig17447:3266..3641Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17447 3267..3641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17447.4129.1

>prot_H-paniculata_contig17447.4129.1 ID=prot_H-paniculata_contig17447.4129.1|Name=mRNA_H-paniculata_contig17447.4129.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
MGEIRTLRPLVVLTTPKAVVVPFWTGSAFFASAAVSANMCWLLAKSFPAA
GRSDTSASCRLLSTLELTSCRRRLGTPFAAAALEGNPILLLSPSCLCHIP
SIAAICGKEPRVLAGPCVIAPAAD*
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mRNA from alignment at H-paniculata_contig17447:3263..3925+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17447.4129.1 ID=mRNA_H-paniculata_contig17447.4129.1|Name=mRNA_H-paniculata_contig17447.4129.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=663bp|location=Sequence derived from alignment at H-paniculata_contig17447:3263..3925+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCAATGGGAGAAATCAGAACGCTGCGTCCATTAGTAGTCCTTACGACGC
CGAAGGCCGTTGTTGTGCCCTTCTGGACTGGTTCCGCATTTTTCGCTTCT
GCAGCTGTTTCGGCCAACATGTGTTGGTTGTTAGCGAAAAGTTTCCCTGC
CGCAGGTAGGAGTGATACGAGTGCCTCGTGCAGACTTCTTTCCACGCTGG
AGTTGACGTCGTGTCGACGGCGATTGGGTACCCCCTTTGCTGCGGCAGCT
TTGGAGGGAAATCCTATATTACTTTTGTCGCCCTCGTGTTTATGCCATAT
TCCATCTATCGCAGCTATCTGCGGAAAAGAGCCTCGGGTTCTTGCAGGAC
CATGCGTTATCGCTCCCGCGGCCGACTGAACAGATGACGATGTCTCTGTT
TCGCTCCCTCCCATCGCCGCGATTTTTTCCTCTCCAACGTCGTGTCCACC
TCCTTTTCGACTCTTCCCTTCCAGCGACAACGACATTTCCGACAACGCAG
GCAACGAGGGCAGTTTCTGGACCGCGTGGTGAGGCTTTCGACACCCACCG
GCACCCTTGCTGCGGTTATAGTCGTACAGAGTCCTGCCCTCAACTCGTTC
CGATTTTTTTGTGCAGACATCGCATCCATCACCCTGCTTTTGACTGCCGC
CCCCCCCTTCACC
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Coding sequence (CDS) from alignment at H-paniculata_contig17447:3263..3925+

>mRNA_H-paniculata_contig17447.4129.1 ID=mRNA_H-paniculata_contig17447.4129.1|Name=mRNA_H-paniculata_contig17447.4129.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig17447:3263..3925+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGAGAAATCAGAACGCTGCGTCCATTAGTAGTCCTTACGACGCCGAA
GGCCGTTGTTGTGCCCTTCTGGACTGGTTCCGCATTTTTCGCTTCTGCAG
CTGTTTCGGCCAACATGTGTTGGTTGTTAGCGAAAAGTTTCCCTGCCGCA
GGTAGGAGTGATACGAGTGCCTCGTGCAGACTTCTTTCCACGCTGGAGTT
GACGTCGTGTCGACGGCGATTGGGTACCCCCTTTGCTGCGGCAGCTTTGG
AGGGAAATCCTATATTACTTTTGTCGCCCTCGTGTTTATGCCATATTCCA
TCTATCGCAGCTATCTGCGGAAAAGAGCCTCGGGTTCTTGCAGGACCATG
CGTTATCGCTCCCGCGGCCGACTGAATGGGAGAAATCAGAACGCTGCGTC
CATTAGTAGTCCTTACGACGCCGAAGGCCGTTGTTGTGCCCTTCTGGACT
GGTTCCGCATTTTTCGCTTCTGCAGCTGTTTCGGCCAACATGTGTTGGTT
GTTAGCGAAAAGTTTCCCTGCCGCAGGTAGGAGTGATACGAGTGCCTCGT
GCAGACTTCTTTCCACGCTGGAGTTGACGTCGTGTCGACGGCGATTGGGT
ACCCCCTTTGCTGCGGCAGCTTTGGAGGGAAATCCTATATTACTTTTGTC
GCCCTCGTGTTTATGCCATATTCCATCTATCGCAGCTATCTGCGGAAAAG
AGCCTCGGGTTCTTGCAGGACCATGCGTTATCGCTCCCGCGGCCGACTGA
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