mRNA_H-paniculata_contig17444.4127.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17444.4127.1
Unique NamemRNA_H-paniculata_contig17444.4127.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17444.4127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17444contigH-paniculata_contig17444:1319..1845 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size509
Cds size354
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17444.4127.1prot_H-paniculata_contig17444.4127.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17444 1472..1845 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929371.1800914-UTR-H-paniculata_contig17444:1318..14711622929371.1800914-UTR-H-paniculata_contig17444:1318..1471Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17444 1319..1471 -
1691480834.3417215-UTR-H-paniculata_contig17444:1318..14711691480834.3417215-UTR-H-paniculata_contig17444:1318..1471Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17444 1319..1471 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929371.1952574-CDS-H-paniculata_contig17444:1471..15081622929371.1952574-CDS-H-paniculata_contig17444:1471..1508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17444 1472..1508 -
1691480834.3547266-CDS-H-paniculata_contig17444:1471..15081691480834.3547266-CDS-H-paniculata_contig17444:1471..1508Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17444 1472..1508 -
1622929371.205511-CDS-H-paniculata_contig17444:1528..18451622929371.205511-CDS-H-paniculata_contig17444:1528..1845Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17444 1529..1845 -
1691480834.3730397-CDS-H-paniculata_contig17444:1528..18451691480834.3730397-CDS-H-paniculata_contig17444:1528..1845Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17444 1529..1845 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17444.4127.1

>prot_H-paniculata_contig17444.4127.1 ID=prot_H-paniculata_contig17444.4127.1|Name=mRNA_H-paniculata_contig17444.4127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
RSVEDDGSGGGGGGVCARGCYCRCCCCDYSSCCHGRRKAPRRFANNVWRD
RRSAVSSPPSPMSDVPARWIPSPRELWVGVDSAGGGLGVSPGKAGTGTWL
RWRGEEMLQLLLLSRRT*
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mRNA from alignment at H-paniculata_contig17444:1319..1845-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17444.4127.1 ID=mRNA_H-paniculata_contig17444.4127.1|Name=mRNA_H-paniculata_contig17444.4127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=527bp|location=Sequence derived from alignment at H-paniculata_contig17444:1319..1845- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAGTGTGGAGGATGACGGTAGTGGGGGAGGCGGTGGAGGCGTCTGTGC
CCGGGGTTGTTATTGTCGTTGTTGTTGCTGTGATTATTCTTCGTGTTGTC
ATGGCCGCCGCAAGGCTCCGCGACGTTTTGCGAATAATGTATGGCGAGAT
AGGAGAAGTGCGGTGTCATCACCACCATCGCCGATGTCAGACGTCCCGGC
ACGCTGGATACCCTCGCCGCGGGAGCTGTGGGTTGGCGTCGATAGCGCAG
GTGGCGGGCTTGGCGTTAGTCCAGGGAAGGCGGGAACGGGGACATGGTTG
AGGTGGAGGGGAGAAGAGCAACGCCGGCAAGGTCAAGAATGTTACAGCTA
TTACTCCTATCTCGACGAACTTGAGAGGTGTACTTCTGTTTGCAACGGAA
AATTCTCATCCTTATCGTCGTCCTCGCCGTCTGTTGTGAGTCTACTGCGA
CCATTCCGCCGGTATCACCCTGGACGGCGGTGGCATCATCACTCCTGCTG
GGCTTGGCCACCAATACTAACACCATC
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Coding sequence (CDS) from alignment at H-paniculata_contig17444:1319..1845-

>mRNA_H-paniculata_contig17444.4127.1 ID=mRNA_H-paniculata_contig17444.4127.1|Name=mRNA_H-paniculata_contig17444.4127.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig17444:1319..1845- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAGTGTGGAGGATGACGGTAGTGGGGGAGGCGGTGGAGGCGTCTGTGC
CCGGGGTTGTTATTGTCGTTGTTGTTGCTGTGATTATTCTTCGTGTTGTC
ATGGCCGCCGCAAGGCTCCGCGACGTTTTGCGAATAATGTATGGCGAGAT
AGGAGAAGTGCGGTGTCATCACCACCATCGCCGATGTCAGACGTCCCGGC
ACGCTGGATACCCTCGCCGCGGGAGCTGTGGGTTGGCGTCGATAGCGCAG
GTGGCGGGCTTGGCGTTAGTCCAGGGAAGGCGGGAACGGGGACATGGTTG
AGGTGGAGGGGAGAAGAAGGAGTGTGGAGGATGACGGTAGTGGGGGAGGC
GGTGGAGGCGTCTGTGCCCGGGGTTGTTATTGTCGTTGTTGTTGCTGTGA
TTATTCTTCGTGTTGTCATGGCCGCCGCAAGGCTCCGCGACGTTTTGCGA
ATAATGTATGGCGAGATAGGAGAAGTGCGGTGTCATCACCACCATCGCCG
ATGTCAGACGTCCCGGCACGCTGGATACCCTCGCCGCGGGAGCTGTGGGT
TGGCGTCGATAGCGCAGGTGGCGGGCTTGGCGTTAGTCCAGGGAAGGCGG
GAACGGGGACATGGTTGAGGTGGAGGGGAGAAGAAATGTTACAGCTATTA
CTCCTATCTCGACGAACTTGAAATGTTACAGCTATTACTCCTATCTCGAC
GAACTTGA
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