mRNA_H-paniculata_contig17430.4124.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17430.4124.1 vs. uniprot
Match: D8LT63_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LT63_ECTSI) HSP 1 Score: 272 bits (695), Expect = 2.080e-88 Identity = 148/257 (57.59%), Postives = 179/257 (69.65%), Query Frame = 1
Query: 7 FSPIILRPNNRAALQPPGASPCSAAPTSRHALNIIDLPILATKFLTATTNGGLSSDTTLKGRSLDVAAGLLTLSLLFSHPVRALAD-SIPGMAPGCSSTTNVSGYTMVTCDRQGLDRDGRLLGCSSSENCLSTSAVRIPAKLGSPWEYAPQTHDADRAFASLVRTVEDTAGATMKTIDTKTHYLLAQFPSKVPPGGVDFVEFLVKSEDQIVLYRSVSRDTLYVYPLQQPVSDQGQIKERLEGEQGQLGWGMYTYEGQ 774
SP + + +A PP + P + AP H P+ K +T N + D G +AA L LSL S+P AD +PG GC+++TN S Y++V+CDR GLDR+GRLLGCSSSENCLSTSAV++P KLGSPWEYA +T DAD AFASLV VE T+ ATMK +D + HY+LA+FPSKVPPG VD VEFLVK EDQIVLYRSVSRDTL++YPLQQPVSDQG+IKERLEG + LGW MYTY G+
Sbjct: 22 LSPKVPLGSTSSAASPPSSLPPTEAPERGH-------PLATMKEITTQKNRVRAKDC---GTRSTLAAAGLALSLFISNPGSLAADPGMPGSGLGCTTSTNPS-YSLVSCDRTGLDRNGRLLGCSSSENCLSTSAVKVPGKLGSPWEYAMRTDDADTAFASLVHAVERTSEATMKIVDREGHYILAEFPSKVPPGSVDSVEFLVKPEDQIVLYRSVSRDTLFLYPLQQPVSDQGKIKERLEGIRNDLGWNMYTYRGE 267
BLAST of mRNA_H-paniculata_contig17430.4124.1 vs. uniprot
Match: A0A835YK12_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK12_9STRA) HSP 1 Score: 158 bits (399), Expect = 4.120e-45 Identity = 79/156 (50.64%), Postives = 107/156 (68.59%), Query Frame = 1
Query: 286 GCSSTTNVSGYTMVTCDRQGLDRDGRLLGCSSSENCLSTSAVRIPAKLGSPWEYAPQTHDADRAFASLVRTVE-DTAGATMKTIDTKTHYLLAQFPSKVPPGGVDFVEFLVKSEDQIVLYRSVSRDTLYVYPLQQPVSDQGQIKERLEGEQGQLGW 750
GC++ +N S T VTC R GL RDGRL C SSENC+S+S+VR PAK +PW YA +T DA AF L+ + A + ++ Y+LA+FP+KVPPG VD VEFL++ D + +RS +RD+++VYPLQQPVSD+G ++RLE + QLGW
Sbjct: 4 GCATISNPSATT-VTCTRVGLARDGRLPPCRSSENCVSSSSVRSPAKFSAPWNYATETSDAKVAFNKLLDVIPLQIKDANLVDVNDDNLYILAEFPAKVPPGSVDVVEFLLRPADNVCSFRSATRDSVFVYPLQQPVSDRGSNRDRLEAIRNQLGW 158
BLAST of mRNA_H-paniculata_contig17430.4124.1 vs. uniprot
Match: W7TWW3_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWW3_9STRA) HSP 1 Score: 142 bits (357), Expect = 1.450e-37 Identity = 88/193 (45.60%), Postives = 119/193 (61.66%), Query Frame = 1
Query: 181 LKGRSLDVAAGLLTLSLLFSHPVRALADSIPGMAPGCSSTTNVSGYTMVTCDRQGLDR-DGRLLGCSSSENCLSTSAVRIPAKLGSPWEYAPQTHDADRAFASLVRTVEDTAGATMKTID--TKTHYLLAQFPSKVPPGGVDFVEFLVKSEDQIVLYRSVSRDTLYVYPLQQPVSDQGQIKERLEGEQGQLGW 750
+ GR L+ LL L++L P A A PG+ C+S +N S +T+VTCDR G+D GR C S+ENC+S+++V P+K SPW + D A+ SLVR VE G + ID +K +YL A+ PSKVPPGGVD +EFL+ +D +V +RS SR ++YPL QPV D G IK+RLE Q +GW
Sbjct: 67 ISGRFLESVLLLLPLTVL---PPSACA--FPGLED-CTSESNPS-FTIVTCDRFGIDPVAGRPKRCLSAENCISSTSVNNPSKYMSPWVFNGAGEDVPTAWLSLVRAVEAQEGLKVVEIDNGSKQYYLRAEAPSKVPPGGVDDLEFLLSPKDGLVFFRSASRQMAFLYPLTQPVGDGGSIKKRLETIQKAVGW 252
BLAST of mRNA_H-paniculata_contig17430.4124.1 vs. uniprot
Match: A0A7S1IFF5_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1IFF5_9EUGL) HSP 1 Score: 129 bits (324), Expect = 3.040e-32 Identity = 68/179 (37.99%), Postives = 106/179 (59.22%), Query Frame = 1
Query: 229 LLFSHPVRALADSIPGMAPGCSSTTNVSGYTMVTCDRQGLDRDGRLLGCSSSENCLSTSAVRIPAKLGSPWEYAPQTHDADRAFASLVRTVEDTAGATMKTIDTKTHYLLAQFPSKVPPGGVDFVEFLVKSEDQIVLYRSVSRDTLYVYPLQQPVSDQGQIKERLEGEQGQLGWGMYTY 765
L+ + P +A+A + +TT ++V C R G + GRLL CSSSENC +++AV P++ PW+Y+ T+D +AF LV +V + GA + +D +Y+ A PS VPP +D +EFL++ +D +V +R +R +++VYPL Q V DQG K+RL + +LGW Y
Sbjct: 127 LILAVPRQAMATAALNSQDESCTTTLALPTSIVECVRFGTPQ-GRLLPCSSSENCSASTAVNSPSQFVPPWDYSIDTNDPHQAFKKLVESVSEEQGAMLIEVDESRYYIHATAPSAVPPTSLDDIEFLMRPDDSLVTHRVATRKSVFVYPLTQIVGDQGATKDRLNSIRERLGWAELQY 304
BLAST of mRNA_H-paniculata_contig17430.4124.1 vs. uniprot
Match: A0A7S2JEN2_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2JEN2_9EUKA) HSP 1 Score: 128 bits (322), Expect = 3.190e-32 Identity = 78/200 (39.00%), Postives = 113/200 (56.50%), Query Frame = 1
Query: 160 GLSSDTTLKGRSLDVAAGLLTLSLLFSHPVRALADSIPGMAPGCSSTTNVSGYTMVTCDRQGLDRDGRLLGCSSSENCLSTSAVRIPAKLGSPWEYAPQTHDAD--RAFASLVRTVEDTAGATMKTIDTKTHYLLAQFPSKVPPGGVDFVEFLVKSEDQI-VLYRSVSRDTLYVYPLQQPVSDQGQIKERLEGEQGQLGW 750
G S +L GR + A L+ + + P R A SI G +T + S YT+VTC GL +DGR+ C++ E+C+STSA+R P+K G PW RA+ S+V V D G ++ D T YL A S VP G D VEFL++S+ +LYRS +R +L++YPLQQPV++Q ++RL + ++GW
Sbjct: 33 GWSKMLSLLGRRAVLKAALVVAGV--ASPERTPAASITGDVSRKCNTVSTSSYTLVTCKGFGLSKDGRVAACAADESCISTSAIRNPSKYGPPWSPVSXXXXXXXXRAWRSVVSAVTDEPGLSIVEQDDGTFYLRATGTSTVPTDGTDDVEFLLRSDGGTRLLYRSATRQSLFLYPLQQPVANQKSHEQRLASIRRRMGW 230
BLAST of mRNA_H-paniculata_contig17430.4124.1 vs. uniprot
Match: A0A7S2RG67_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RG67_9STRA) HSP 1 Score: 126 bits (317), Expect = 7.300e-32 Identity = 75/186 (40.32%), Postives = 113/186 (60.75%), Query Frame = 1
Query: 226 SLLFSHPVRALADSIPGMAPG--CSSTTNVSGYTMVTCDRQGLDRDGRLLGCSSSENCLSTSAVRIPAKLGSPWEYAPQTHDADRAFASL-VRTVEDTAGATMKTIDTKTH--YLLAQFPSKVPPGGVDFVEFLVKSEDQIVLYRSVSRDTLYVYPLQQPVSDQGQIKERLEGEQGQLGWGMYTYE 768
+L+ PV ALA P +A C +T+N +T TC R GL +GRL C + ENC+STS+V+ +K PW+Y P+T + DRA+ SL + ++ GA ++ D T YL PS VPP G D +EF++ ++++V +RS SR +++++PLQQPVSD G+ RL+ + LGWG + E
Sbjct: 52 ALVLPVPVLALAGR-PAVATEYPCRTTSNPF-FTTKTCYRVGLV-EGRLGKCLADENCMSTSSVQSASKYSPPWDYTPETLNPDRAWKSLKLALLQTIQGARVEAEDVSTERLYLHVTAPSAVPPAGTDDLEFVLDPKEKLVFFRSASRSSVFLFPLQQPVSDNGRHLSRLQNVRSTLGWGSLSLE 234
BLAST of mRNA_H-paniculata_contig17430.4124.1 vs. uniprot
Match: A0A7S0AZ98_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AZ98_9STRA) HSP 1 Score: 125 bits (313), Expect = 1.850e-31 Identity = 71/164 (43.29%), Postives = 103/164 (62.80%), Query Frame = 1
Query: 286 GCSSTTNVSGYTMVTC--DRQGLDRDGRLLGCSSSENCLSTSAVRIPAKLGSPWEYAPQTHDADRAFASLVRTVEDTAGATMKTIDTKTHYLLAQFPSKVPPG-----GVDFVEFLVKSEDQIVLYRSVSRDTLYVYPLQQPVSDQGQIKERLEGEQGQLGWGM 756
GC + TN S T+VTC + + + DGRL S++ N +STS+VR P++ PW Y +T DA A+ SL+ V +TA ++ ++ YL A P++ PPG GVD +EF++K ED +VLYRS SR +++VYPL QPVSDQ +RL + +LGWG+
Sbjct: 48 GCKTDTNPS-RTVVTCYGELKKYNEDGRLSKISATANGVSTSSVRNPSRFSPPWNYVTETSDASAAWKSLINVV-NTAEPGIEIVELTDTYLHATAPTQSPPGLTGPAGVDDLEFILKPEDNLVLYRSASRTSVFVYPLTQPVSDQNTNLKRLNKIRNKLGWGL 209
BLAST of mRNA_H-paniculata_contig17430.4124.1 vs. uniprot
Match: A0A7S0LVH5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LVH5_9EUKA) HSP 1 Score: 122 bits (305), Expect = 1.030e-29 Identity = 76/198 (38.38%), Postives = 107/198 (54.04%), Query Frame = 1
Query: 190 RSLDVAAGLLTLSLLFSHPVRALADSIP--GMAPG--CSSTTNVSGYTMVTCDRQGLDRDGRLLGCSSSENCLSTSAVRIPAKLGSPWE---YAPQTHDADRAFASLVRTVEDTAGATMKTIDTKTHYLLAQFPSKVPPGGVDFVEFLVKS----EDQIVLYRSVSRDTLYVYPLQQPVSDQGQIKERLEGEQGQLGW 750
R +A L+ P A AD++ G+ P T + T VTC GL D RL GC+S+E+C+ST+AV P+K W+ +P+ D RAF SLV +++T G + T D Y+ A SK+P G D +EFL+++ E VL+RS +R LYVYPLQQP+ DQ +RL G + +LGW
Sbjct: 42 RRTQLADATRVLNRAVGRPAAAAADAMGTLGVFPQQRVCRTVSTPAVTTVTCIANGLTPDNRLNGCTSAESCVSTAAVSNPSKYSPAWKPPRASPERDDPPRAFRSLVSALQETPGVEIDTKDESRLYIHATATSKLPSDGTDDLEFLLRAGSPTEGCTVLFRSATRQALYVYPLQQPLVDQDTHSKRLRGLRERLGW 239
BLAST of mRNA_H-paniculata_contig17430.4124.1 vs. uniprot
Match: A0A7S2N0F5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N0F5_9STRA) HSP 1 Score: 122 bits (305), Expect = 1.730e-29 Identity = 71/163 (43.56%), Postives = 101/163 (61.96%), Query Frame = 1
Query: 286 GCSSTTNVSGYTMVTC--DRQGLDRDGRLLGCSSSENCLSTSAVRIPAKLGSPWEYAPQTHDADRAFASLVRTVEDTA-GATMKTIDTKTHYLLAQFPSKVPPG-----GVDFVEFLVKSEDQIVLYRSVSRDTLYVYPLQQPVSDQGQIKERLEGEQGQLGW 750
GC++TTN S T VTC + + + DGRL S++EN +STS+VR P++ PW Y +T DA A+ SLV V G T++ ++ YL A P+ PPG G+D +EFL++ ED +VLYRS SR +++VYPL QPVSD+ +RL+ + LGW
Sbjct: 128 GCTTTTNPS-TTTVTCTGELRANNADGRLSKISATENGVSTSSVRNPSRFSPPWTYLTETSDARVAWKSLVSAVNRVEPGGTLQIVELTDSYLHATVPTVSPPGLLGEAGLDDIEFLLRPEDNLVLYRSASRTSVFVYPLTQPVSDRNSNLKRLQKIRSILGW 289
BLAST of mRNA_H-paniculata_contig17430.4124.1 vs. uniprot
Match: A0A1E7FHJ7_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FHJ7_9STRA) HSP 1 Score: 122 bits (306), Expect = 1.930e-29 Identity = 71/167 (42.51%), Postives = 102/167 (61.08%), Query Frame = 1
Query: 286 GCSSTTNVSGYTMVTC--DRQGLDRDGRLLGCSSSENCLSTSAVRIPAKLGSPWEYAPQTHDADRAFASLVRTVEDTAGATMKTIDTKTHYLLAQFPSKVPPG--GVDFVEFLVKSEDQIVLYRSVSRDTLYVYPLQQPVSDQGQIKERLEGEQGQLGWGMYTYEGQ 774
GC + TN S T+VTC D Q + DGRL S++EN +STS+V+ P++ PW Y +T DA RA+ SL V + + + I+ +YL A P+ PPG GVD +EFL++ +D ++LYRS SR +++VYPL QPVSD +RL+ + LGW Y+ Q
Sbjct: 155 GCITNTNPS-RTIVTCRGDMQSNNPDGRLSKVSATENGVSTSSVKNPSRFSPPWSYLTETQDAKRAWKSLQSAVLN-VDQSCQIIELTDNYLHAIVPTTSPPGIEGVDDLEFLIRPDDNVILYRSASRTSVFVYPLTQPVSDNNSNLKRLQKIRQSLGWEELGYQQQ 319 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17430.4124.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17430.4124.1 >prot_H-paniculata_contig17430.4124.1 ID=prot_H-paniculata_contig17430.4124.1|Name=mRNA_H-paniculata_contig17430.4124.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=259bp QAFSPIILRPNNRAALQPPGASPCSAAPTSRHALNIIDLPILATKFLTATback to top mRNA from alignment at H-paniculata_contig17430:2663..4973- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17430.4124.1 ID=mRNA_H-paniculata_contig17430.4124.1|Name=mRNA_H-paniculata_contig17430.4124.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2311bp|location=Sequence derived from alignment at H-paniculata_contig17430:2663..4973- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17430:2663..4973- >mRNA_H-paniculata_contig17430.4124.1 ID=mRNA_H-paniculata_contig17430.4124.1|Name=mRNA_H-paniculata_contig17430.4124.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1554bp|location=Sequence derived from alignment at H-paniculata_contig17430:2663..4973- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |